RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 NBPF15Q8N660 670 aa6.78□□□□□ -1.32
CSDE1-202ENST00000339438 KIF18AQ8NI77 898 aa6.78□□□□□ -1.32
CSDE1-202ENST00000339438 FEZ2Q9UHY8 353 aaPredicted RBP6.78□□□□□ -1.32
CSDE1-202ENST00000339438 ZBTB7CA1YPR0 619 aa6.78□□□□□ -1.32
CSDE1-202ENST00000339438 YY1AP1Q9H869 796 aa6.78□□□□□ -1.32
CSDE1-202ENST00000339438 PRDM11Q9NQV5 511 aa6.78□□□□□ -1.32
CSDE1-202ENST00000339438 PRPF40AO75400 957 aaKnown RBP6.78□□□□□ -1.32
CSDE1-202ENST00000339438 NEUROD2Q15784 382 aa6.78□□□□□ -1.32
CSDE1-202ENST00000339438 FAM182BQ5T319 152 aa6.78□□□□□ -1.32
CSDE1-202ENST00000339438 DEFB132Q7Z7B7 95 aa6.78□□□□□ -1.32
CSDE1-202ENST00000339438 CHMP4AQ9BY43 222 aa6.78□□□□□ -1.32
CSDE1-202ENST00000339438 GOLGA6L22H0YM25 854 aa6.77□□□□□ -1.33
CSDE1-202ENST00000339438 MAPK8IP2Q13387 824 aaPredicted RBP6.77□□□□□ -1.33
CSDE1-202ENST00000339438 TBC1D9Q6ZT07 1266 aa6.77□□□□□ -1.33
CSDE1-202ENST00000339438 ZNF771Q7L3S4 317 aaPredicted RBP6.77□□□□□ -1.33
CSDE1-202ENST00000339438 LCTP09848 1927 aa6.77□□□□□ -1.33
CSDE1-202ENST00000339438 LMOD2Q6P5Q4 547 aa6.77□□□□□ -1.33
CSDE1-202ENST00000339438 ZGPATQ8N5A5 531 aaKnown RBP6.77□□□□□ -1.33
CSDE1-202ENST00000339438 TIGD1Q96MW7 591 aa6.77□□□□□ -1.33
CSDE1-202ENST00000339438 ZBTB40Q9NUA8 1239 aa6.77□□□□□ -1.33
CSDE1-202ENST00000339438 PYCARDQ9ULZ3 195 aa6.77□□□□□ -1.33
CSDE1-202ENST00000339438 NOP2P46087 812 aaKnown RBP6.77□□□□□ -1.33
CSDE1-202ENST00000339438 EIF5P55010 431 aaKnown RBP6.77□□□□□ -1.33
CSDE1-202ENST00000339438 NAA30Q147X3 362 aaPredicted RBP6.77□□□□□ -1.33
CSDE1-202ENST00000339438 USHBP1Q8N6Y0 703 aa6.77□□□□□ -1.33
CSDE1-202ENST00000339438 DCAF5Q96JK2 942 aa6.77□□□□□ -1.33
CSDE1-202ENST00000339438 MORC1Q86VD1 984 aa6.76□□□□□ -1.33
CSDE1-202ENST00000339438 RNF214Q8ND24 703 aa6.76□□□□□ -1.33
CSDE1-202ENST00000339438 ZCRB1Q8TBF4 217 aaKnown RBP6.76□□□□□ -1.33
CSDE1-202ENST00000339438 BCL2L13Q9BXK5 485 aa6.76□□□□□ -1.33
CSDE1-202ENST00000339438 UTYO14607 1347 aa6.76□□□□□ -1.33
CSDE1-202ENST00000339438 NUTM2BA6NNL0 878 aaPredicted RBP6.76□□□□□ -1.33
CSDE1-202ENST00000339438 NUTM2EB1AL46 878 aaPredicted RBP6.76□□□□□ -1.33
CSDE1-202ENST00000339438 NUCB2P80303 420 aa6.76□□□□□ -1.33
CSDE1-202ENST00000339438 NUTM2AQ8IVF1 878 aaPredicted RBP6.76□□□□□ -1.33
CSDE1-202ENST00000339438 NAV1Q8NEY1 1877 aa6.76□□□□□ -1.33
CSDE1-202ENST00000339438 FUCA2Q9BTY2 467 aa6.76□□□□□ -1.33
CSDE1-202ENST00000339438 GEMIN8Q9NWZ8 242 aaKnown RBP6.76□□□□□ -1.33
CSDE1-202ENST00000339438 TRIM27P14373 513 aa6.75□□□□□ -1.33
CSDE1-202ENST00000339438 TXNRD1Q16881 649 aa6.75□□□□□ -1.33
CSDE1-202ENST00000339438 ASAP1Q9ULH1 1129 aa6.75□□□□□ -1.33
CSDE1-202ENST00000339438 RAD50Q92878 1312 aa6.75□□□□□ -1.33
CSDE1-202ENST00000339438 TRIM6-TRIM34B2RNG4 842 aa6.75□□□□□ -1.33
CSDE1-202ENST00000339438 KCNQ3O43525 872 aa6.75□□□□□ -1.33
CSDE1-202ENST00000339438 MPNDQ8N594 471 aa6.75□□□□□ -1.33
CSDE1-202ENST00000339438 ZBTB9Q96C00 473 aa6.75□□□□□ -1.33
CSDE1-202ENST00000339438 KIF1BPQ96EK5 621 aa6.75□□□□□ -1.33
CSDE1-202ENST00000339438 TRIM34Q9BYJ4 488 aa6.75□□□□□ -1.33
CSDE1-202ENST00000339438 ZNF446Q9NWS9 450 aa6.75□□□□□ -1.33
CSDE1-202ENST00000339438 ZNF236Q9UL36 1845 aa6.75□□□□□ -1.33
CSDE1-202ENST00000339438 IL16Q14005 1332 aa6.75□□□□□ -1.33
CSDE1-202ENST00000339438 CYP2C19P33261 490 aa6.75□□□□□ -1.33
CSDE1-202ENST00000339438 UVSSAQ2YD98 709 aa6.75□□□□□ -1.33
CSDE1-202ENST00000339438 TSGA10IPQ3SY00 556 aa6.75□□□□□ -1.33
CSDE1-202ENST00000339438 WDR63Q8IWG1 891 aa6.75□□□□□ -1.33
CSDE1-202ENST00000339438 USP26Q9BXU7 913 aa6.75□□□□□ -1.33
CSDE1-202ENST00000339438 PRAMEF22A3QJZ6 481 aa6.74□□□□□ -1.33
CSDE1-202ENST00000339438 EIF4A1P60842 406 aaKnown RBP6.74□□□□□ -1.33
CSDE1-202ENST00000339438 SLC15A2Q16348 729 aa6.74□□□□□ -1.33
CSDE1-202ENST00000339438 COL23A1Q86Y22 540 aaPredicted RBP6.74□□□□□ -1.33
CSDE1-202ENST00000339438 CHMP4CQ96CF2 233 aa6.74□□□□□ -1.33
CSDE1-202ENST00000339438 ST7Q9NRC1 585 aa6.74□□□□□ -1.33
CSDE1-202ENST00000339438 KCNG1Q9UIX4 513 aa6.74□□□□□ -1.33
CSDE1-202ENST00000339438 USP42Q9H9J4 1324 aaKnown RBP6.74□□□□□ -1.33
CSDE1-202ENST00000339438 MGAMO43451 1857 aa6.74□□□□□ -1.33
CSDE1-202ENST00000339438 KMT5BQ4FZB7 885 aa6.74□□□□□ -1.33
CSDE1-202ENST00000339438 CHD1LQ86WJ1 897 aa6.74□□□□□ -1.33
CSDE1-202ENST00000339438 ADCY5O95622 1261 aa6.74□□□□□ -1.33
CSDE1-202ENST00000339438 GSPT1P15170 499 aaKnown RBP6.74□□□□□ -1.33
CSDE1-202ENST00000339438 FAM193AP78312 1265 aa6.74□□□□□ -1.33
CSDE1-202ENST00000339438 CRY2Q49AN0 593 aa6.74□□□□□ -1.33
CSDE1-202ENST00000339438 DZIP1LQ8IYY4 767 aaKnown RBP6.74□□□□□ -1.33
CSDE1-202ENST00000339438 TSPY26PQ9H489 355 aa6.74□□□□□ -1.33
CSDE1-202ENST00000339438 CAMTA2O94983 1202 aa6.73□□□□□ -1.33
CSDE1-202ENST00000339438 DDB1Q16531 1140 aa6.73□□□□□ -1.33
CSDE1-202ENST00000339438 AMOTQ4VCS5 1084 aa6.73□□□□□ -1.33
CSDE1-202ENST00000339438 USP25Q9UHP3 1055 aa6.73□□□□□ -1.33
CSDE1-202ENST00000339438 RTL9Q8NET4 1388 aa6.73□□□□□ -1.33
CSDE1-202ENST00000339438 CCDC66A2RUB6 948 aa6.73□□□□□ -1.33
CSDE1-202ENST00000339438 U2SURPO15042 1029 aaKnown RBP6.73□□□□□ -1.33
CSDE1-202ENST00000339438 EN1Q05925 392 aaPredicted RBP6.73□□□□□ -1.33
CSDE1-202ENST00000339438 RAD51AP2Q09MP3 1159 aa6.73□□□□□ -1.33
CSDE1-202ENST00000339438 CWC22Q9HCG8 908 aaKnown RBP6.73□□□□□ -1.33
CSDE1-202ENST00000339438 POLRMTO00411 1230 aaKnown RBP6.73□□□□□ -1.33
CSDE1-202ENST00000339438 TRIM37O94972 964 aa6.73□□□□□ -1.33
CSDE1-202ENST00000339438 BRD1O95696 1058 aa6.73□□□□□ -1.33
CSDE1-202ENST00000339438 CDK11BP21127 795 aaKnown RBP6.73□□□□□ -1.33
CSDE1-202ENST00000339438 BRD2P25440 801 aaKnown RBP6.73□□□□□ -1.33
CSDE1-202ENST00000339438 HNRNPH2P55795 449 aaKnown RBP6.73□□□□□ -1.33
CSDE1-202ENST00000339438 DDR1Q08345 913 aa6.73□□□□□ -1.33
CSDE1-202ENST00000339438 EFCC1Q9HA90 598 aa6.73□□□□□ -1.33
CSDE1-202ENST00000339438 RRP7AQ9Y3A4 280 aaKnown RBP6.73□□□□□ -1.33
CSDE1-202ENST00000339438 UBN2Q6ZU65 1347 aa6.72□□□□□ -1.33
CSDE1-202ENST00000339438 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP6.72□□□□□ -1.33
CSDE1-202ENST00000339438 GADD45BO75293 160 aaPredicted RBP6.72□□□□□ -1.33
CSDE1-202ENST00000339438 GYS1P13807 737 aa6.72□□□□□ -1.33
CSDE1-202ENST00000339438 ZKSCAN2Q63HK3 967 aa6.72□□□□□ -1.33
CSDE1-202ENST00000339438 SIRT2Q8IXJ6 389 aa6.72□□□□□ -1.33
CSDE1-202ENST00000339438 LNPKQ9C0E8 428 aa6.72□□□□□ -1.33
CSDE1-202ENST00000339438 PRR29P0C7W0 189 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms