RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 H0YIN7 160 aa27.77■■■□□ 2.04
SDC3-202ENST00000339394 SRGNP10124 158 aa27.77■■■□□ 2.04
SDC3-202ENST00000339394 CHRNA5P30532 468 aa27.77■■■□□ 2.04
SDC3-202ENST00000339394 CCDC152Q4G0S7 254 aa27.77■■■□□ 2.04
SDC3-202ENST00000339394 GREM2Q9H772 168 aa27.76■■■□□ 2.03
SDC3-202ENST00000339394 PDZRN3Q9UPQ7 1066 aa27.76■■■□□ 2.03
SDC3-202ENST00000339394 TNRC6CQ9HCJ0 1690 aaKnown RBP27.75■■■□□ 2.03
SDC3-202ENST00000339394 DDX60Q8IY21 1712 aaKnown RBP27.75■■■□□ 2.03
SDC3-202ENST00000339394 A0A0G2JLW4 131 aa27.75■■■□□ 2.03
SDC3-202ENST00000339394 RPGRQ92834 1020 aaKnown RBP27.75■■■□□ 2.03
SDC3-202ENST00000339394 CHMP3Q9Y3E7 222 aa27.74■■■□□ 2.03
SDC3-202ENST00000339394 DPEP1P16444 411 aa27.73■■■□□ 2.03
SDC3-202ENST00000339394 HOXA10P31260 410 aaPredicted RBP27.73■■■□□ 2.03
SDC3-202ENST00000339394 FAM161AQ3B820 660 aa27.73■■■□□ 2.03
SDC3-202ENST00000339394 MASTLQ96GX5 879 aa27.73■■■□□ 2.03
SDC3-202ENST00000339394 ANKRD31Q8N7Z5 1873 aa27.73■■■□□ 2.03
SDC3-202ENST00000339394 NPR1P16066 1061 aa27.73■■■□□ 2.03
SDC3-202ENST00000339394 KCNA3P22001 575 aa27.73■■■□□ 2.03
SDC3-202ENST00000339394 NLGN2Q8NFZ4 835 aa27.73■■■□□ 2.03
SDC3-202ENST00000339394 SYT17Q9BSW7 474 aa27.73■■■□□ 2.03
SDC3-202ENST00000339394 DDX46Q7L014 1031 aaKnown RBP27.72■■■□□ 2.03
SDC3-202ENST00000339394 SEC31BQ9NQW1 1179 aa27.72■■■□□ 2.03
SDC3-202ENST00000339394 ITGA6P23229 1130 aa27.71■■■□□ 2.03
SDC3-202ENST00000339394 ZNF622Q969S3 477 aaKnown RBP eCLIP27.71■■■□□ 2.03
SDC3-202ENST00000339394 RBM17Q96I25 401 aaKnown RBP27.71■■■□□ 2.03
SDC3-202ENST00000339394 MTX1Q13505 466 aa27.7■■■□□ 2.03
SDC3-202ENST00000339394 CEP85Q6P2H3 762 aa27.7■■■□□ 2.03
SDC3-202ENST00000339394 RTL9Q8NET4 1388 aa27.7■■■□□ 2.02
SDC3-202ENST00000339394 LAMB2P55268 1798 aa27.7■■■□□ 2.02
SDC3-202ENST00000339394 KIF13BQ9NQT8 1826 aa27.7■■■□□ 2.02
SDC3-202ENST00000339394 IFIT5Q13325 482 aaKnown RBP27.69■■■□□ 2.02
SDC3-202ENST00000339394 AAMPQ13685 434 aa27.69■■■□□ 2.02
SDC3-202ENST00000339394 CCDC57Q2TAC2 916 aa27.69■■■□□ 2.02
SDC3-202ENST00000339394 STYK1Q6J9G0 422 aa27.69■■■□□ 2.02
SDC3-202ENST00000339394 LRP5O75197 1615 aa27.69■■■□□ 2.02
SDC3-202ENST00000339394 SRGAP3O43295 1099 aa27.69■■■□□ 2.02
SDC3-202ENST00000339394 NEFLP07196 543 aa27.69■■■□□ 2.02
SDC3-202ENST00000339394 PNMA6EA0A0J9YXQ4 647 aa27.68■■■□□ 2.02
SDC3-202ENST00000339394 ALDH1B1P30837 517 aa27.68■■■□□ 2.02
SDC3-202ENST00000339394 ATP8B2P98198 1209 aa27.68■■■□□ 2.02
SDC3-202ENST00000339394 CRAMP1Q96RY5 1269 aa27.68■■■□□ 2.02
SDC3-202ENST00000339394 ANKRD18BA2A2Z9 1011 aa27.67■■■□□ 2.02
SDC3-202ENST00000339394 RPAP2Q8IXW5 612 aaPredicted RBP27.67■■■□□ 2.02
SDC3-202ENST00000339394 CELF1Q92879 486 aaKnown RBP27.67■■■□□ 2.02
SDC3-202ENST00000339394 GRAPQ13588 217 aa27.66■■■□□ 2.02
SDC3-202ENST00000339394 GRAPLQ8TC17 118 aaPredicted RBP27.66■■■□□ 2.02
SDC3-202ENST00000339394 CNKSR1Q969H4 720 aa27.66■■■□□ 2.02
SDC3-202ENST00000339394 PCDHB15Q9Y5E8 787 aa27.66■■■□□ 2.02
SDC3-202ENST00000339394 SIRT2Q8IXJ6 389 aa27.65■■■□□ 2.02
SDC3-202ENST00000339394 PIM2Q9P1W9 311 aa27.65■■■□□ 2.02
SDC3-202ENST00000339394 RFX5P48382 616 aaPredicted RBP27.65■■■□□ 2.02
SDC3-202ENST00000339394 RPS8P62241 208 aaKnown RBP27.65■■■□□ 2.02
SDC3-202ENST00000339394 CDC5LQ99459 802 aaKnown RBP27.65■■■□□ 2.02
SDC3-202ENST00000339394 TTLL6Q8N841 843 aa27.64■■■□□ 2.01
SDC3-202ENST00000339394 KLHDC4Q8TBB5 520 aa27.64■■■□□ 2.01
SDC3-202ENST00000339394 ZNF594Q96JF6 807 aaPredicted RBP27.64■■■□□ 2.01
SDC3-202ENST00000339394 WWC3Q9ULE0 1092 aa27.64■■■□□ 2.01
SDC3-202ENST00000339394 UTRNP46939 3433 aa27.63■■■□□ 2.01
SDC3-202ENST00000339394 COL11A2P13942 1736 aaPredicted RBP27.63■■■□□ 2.01
SDC3-202ENST00000339394 BBOX1O75936 387 aa27.63■■■□□ 2.01
SDC3-202ENST00000339394 SSH3Q8TE77 659 aa27.63■■■□□ 2.01
SDC3-202ENST00000339394 PTPN12Q05209 780 aaKnown RBP27.62■■■□□ 2.01
SDC3-202ENST00000339394 POLA2Q14181 598 aa27.62■■■□□ 2.01
SDC3-202ENST00000339394 TAF7LQ5H9L4 462 aa27.62■■■□□ 2.01
SDC3-202ENST00000339394 PRPF40BQ6NWY9 871 aaKnown RBP27.62■■■□□ 2.01
SDC3-202ENST00000339394 ANKRD18AQ8IVF6 992 aa27.62■■■□□ 2.01
SDC3-202ENST00000339394 KIAA1551Q9HCM1 1747 aa27.61■■■□□ 2.01
SDC3-202ENST00000339394 MYH3P11055 1940 aa27.61■■■□□ 2.01
SDC3-202ENST00000339394 IGHMBP2P38935 993 aaKnown RBP27.6■■■□□ 2.01
SDC3-202ENST00000339394 DALRD3Q5D0E6 543 aaKnown RBP27.6■■■□□ 2.01
SDC3-202ENST00000339394 MPHOSPH8Q99549 860 aa27.6■■■□□ 2.01
SDC3-202ENST00000339394 PA2G4Q9UQ80 394 aaKnown RBP27.6■■■□□ 2.01
SDC3-202ENST00000339394 COL4A1P02462 1669 aa27.59■■■□□ 2.01
SDC3-202ENST00000339394 LDHAL6AQ6ZMR3 332 aa27.59■■■□□ 2.01
SDC3-202ENST00000339394 COPRSQ9NQ92 184 aa27.59■■■□□ 2.01
SDC3-202ENST00000339394 BSDC1Q9NW68 430 aaPredicted RBP27.59■■■□□ 2.01
SDC3-202ENST00000339394 PPEF1O14829 653 aaPredicted RBP27.58■■■□□ 2.01
SDC3-202ENST00000339394 HMMRO75330 724 aa27.58■■■□□ 2.01
SDC3-202ENST00000339394 SLC51AQ86UW1 340 aa27.56■■■□□ 2
SDC3-202ENST00000339394 C7orf43Q8WVR3 580 aa27.56■■■□□ 2
SDC3-202ENST00000339394 PUS3Q9BZE2 481 aaKnown RBP27.56■■■□□ 2
SDC3-202ENST00000339394 SIL1Q9H173 461 aa27.56■■■□□ 2
SDC3-202ENST00000339394 BCS1LQ9Y276 419 aa27.56■■■□□ 2
SDC3-202ENST00000339394 TMC4Q7Z404 712 aa27.56■■■□□ 2
SDC3-202ENST00000339394 ATP6V0A2Q9Y487 856 aa27.56■■■□□ 2
SDC3-202ENST00000339394 LRRC24Q50LG9 513 aa27.55■■■□□ 2
SDC3-202ENST00000339394 CNNM1Q9NRU3 951 aa27.55■■■□□ 2
SDC3-202ENST00000339394 ZNF219Q9P2Y4 722 aaPredicted RBP27.55■■■□□ 2
SDC3-202ENST00000339394 C21orf2O43822 256 aa27.54■■■□□ 2
SDC3-202ENST00000339394 OLFM4Q6UX06 510 aa27.54■■■□□ 2
SDC3-202ENST00000339394 SP8Q8IXZ3 490 aa27.54■■■□□ 2
SDC3-202ENST00000339394 RIPOR2Q9Y4F9 1068 aa27.54■■■□□ 2
SDC3-202ENST00000339394 DLEC1Q9Y238 1755 aa27.53■■■□□ 2
SDC3-202ENST00000339394 EYA2O00167 538 aa27.53■■■□□ 2
SDC3-202ENST00000339394 SURF6O75683 361 aaKnown RBP27.53■■■□□ 2
SDC3-202ENST00000339394 MINPP1Q9UNW1 487 aa27.53■■■□□ 2
SDC3-202ENST00000339394 TAF1P21675 1872 aa27.52■■■□□ 2
SDC3-202ENST00000339394 FBXO3Q9UK99 471 aa27.52■■■□□ 2
SDC3-202ENST00000339394 HDAC1Q13547 482 aaPredicted RBP27.52■■■□□ 2
SDC3-202ENST00000339394 ATG9AQ7Z3C6 839 aa27.52■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms