RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 CUL3Q13618 768 aa4.76□□□□□ -1.65
NEDD4-201ENST00000338963 FMNL2Q96PY5 1086 aa4.76□□□□□ -1.65
NEDD4-201ENST00000338963 TRIM4Q9C037 500 aa4.76□□□□□ -1.65
NEDD4-201ENST00000338963 HOOK1Q9UJC3 728 aaKnown RBP4.76□□□□□ -1.65
NEDD4-201ENST00000338963 REREQ9P2R6 1566 aa4.76□□□□□ -1.65
NEDD4-201ENST00000338963 RTEL1-TNFRSF6BF6WH68 1400 aa4.76□□□□□ -1.65
NEDD4-201ENST00000338963 NCAPG2Q86XI2 1143 aa4.76□□□□□ -1.65
NEDD4-201ENST00000338963 FAM177A1Q8N128 213 aaPredicted RBP4.76□□□□□ -1.65
NEDD4-201ENST00000338963 ARHGAP18Q8N392 663 aa4.76□□□□□ -1.65
NEDD4-201ENST00000338963 C3orf20Q8ND61 904 aa4.76□□□□□ -1.65
NEDD4-201ENST00000338963 RBM27Q9P2N5 1060 aaKnown RBP4.76□□□□□ -1.65
NEDD4-201ENST00000338963 GGA2Q9UJY4 613 aa4.76□□□□□ -1.65
NEDD4-201ENST00000338963 IPO5O00410 1097 aaKnown RBP4.76□□□□□ -1.65
NEDD4-201ENST00000338963 PTGS1P23219 599 aa4.76□□□□□ -1.65
NEDD4-201ENST00000338963 SCRN1Q12765 414 aa4.76□□□□□ -1.65
NEDD4-201ENST00000338963 KBTBD12Q3ZCT8 623 aa4.76□□□□□ -1.65
NEDD4-201ENST00000338963 ARHGAP22Q7Z5H3 698 aa4.76□□□□□ -1.65
NEDD4-201ENST00000338963 COG6Q9Y2V7 657 aa4.76□□□□□ -1.65
NEDD4-201ENST00000338963 RAPGEF2Q9Y4G8 1499 aa4.76□□□□□ -1.65
NEDD4-201ENST00000338963 DNAJC8O75937 253 aaPredicted RBP4.76□□□□□ -1.65
NEDD4-201ENST00000338963 FESP07332 822 aa4.76□□□□□ -1.65
NEDD4-201ENST00000338963 TROVE2P10155 538 aaKnown RBP eCLIP4.76□□□□□ -1.65
NEDD4-201ENST00000338963 KIF5BP33176 963 aa4.76□□□□□ -1.65
NEDD4-201ENST00000338963 SARM1Q6SZW1 724 aa4.76□□□□□ -1.65
NEDD4-201ENST00000338963 ARMC9Q7Z3E5 817 aa4.76□□□□□ -1.65
NEDD4-201ENST00000338963 TEX9Q8N6V9 391 aa4.76□□□□□ -1.65
NEDD4-201ENST00000338963 ZFAND2BQ8WV99 257 aa4.76□□□□□ -1.65
NEDD4-201ENST00000338963 MAF1Q9H063 256 aa4.76□□□□□ -1.65
NEDD4-201ENST00000338963 ZNF644Q9H582 1327 aaPredicted RBP4.76□□□□□ -1.65
NEDD4-201ENST00000338963 ROR2Q01974 943 aaKnown RBP4.76□□□□□ -1.65
NEDD4-201ENST00000338963 GAS2L2Q8NHY3 880 aa4.76□□□□□ -1.65
NEDD4-201ENST00000338963 VCX3BQ9H321 246 aa4.76□□□□□ -1.65
NEDD4-201ENST00000338963 VCX3AQ9NNX9 186 aa4.76□□□□□ -1.65
NEDD4-201ENST00000338963 EPRSP07814 1512 aaKnown RBP4.76□□□□□ -1.65
NEDD4-201ENST00000338963 CBFA2T2O43439 604 aa4.76□□□□□ -1.65
NEDD4-201ENST00000338963 WHAMMP3Q1A5X7 153 aa4.76□□□□□ -1.65
NEDD4-201ENST00000338963 RPAP2Q8IXW5 612 aaPredicted RBP4.76□□□□□ -1.65
NEDD4-201ENST00000338963 CCAR2Q8N163 923 aaKnown RBP4.76□□□□□ -1.65
NEDD4-201ENST00000338963 B4GALNT2Q8NHY0 566 aa4.76□□□□□ -1.65
NEDD4-201ENST00000338963 MAK16Q9BXY0 300 aaKnown RBP4.76□□□□□ -1.65
NEDD4-201ENST00000338963 FOXD4L1Q9NU39 408 aa4.76□□□□□ -1.65
NEDD4-201ENST00000338963 SMAPO00193 183 aa4.75□□□□□ -1.65
NEDD4-201ENST00000338963 CCT2P78371 535 aaKnown RBP4.75□□□□□ -1.65
NEDD4-201ENST00000338963 PPFIA1Q13136 1202 aa4.75□□□□□ -1.65
NEDD4-201ENST00000338963 KIAA0753Q2KHM9 967 aa4.75□□□□□ -1.65
NEDD4-201ENST00000338963 CCDC181Q5TID7 509 aa4.75□□□□□ -1.65
NEDD4-201ENST00000338963 MYLK4Q86YV6 388 aaPredicted RBP4.75□□□□□ -1.65
NEDD4-201ENST00000338963 AFAP1Q8N556 730 aa4.75□□□□□ -1.65
NEDD4-201ENST00000338963 CAPN7Q9Y6W3 813 aa4.75□□□□□ -1.65
NEDD4-201ENST00000338963 HMMRO75330 724 aa4.75□□□□□ -1.65
NEDD4-201ENST00000338963 SMTNP53814 917 aa4.75□□□□□ -1.65
NEDD4-201ENST00000338963 MVPQ14764 893 aaKnown RBP4.75□□□□□ -1.65
NEDD4-201ENST00000338963 OTUD6AQ7L8S5 288 aa4.75□□□□□ -1.65
NEDD4-201ENST00000338963 SKAP1Q86WV1 359 aa4.75□□□□□ -1.65
NEDD4-201ENST00000338963 LMNTD2Q8IXW0 634 aa4.75□□□□□ -1.65
NEDD4-201ENST00000338963 DZIP1LQ8IYY4 767 aaKnown RBP4.75□□□□□ -1.65
NEDD4-201ENST00000338963 PRPF38AQ8NAV1 312 aaKnown RBP4.75□□□□□ -1.65
NEDD4-201ENST00000338963 ZNF280CQ8ND82 737 aa4.75□□□□□ -1.65
NEDD4-201ENST00000338963 ANKRD24Q8TF21 1146 aa4.75□□□□□ -1.65
NEDD4-201ENST00000338963 DDX12PQ92771 950 aa4.75□□□□□ -1.65
NEDD4-201ENST00000338963 CARD11Q9BXL7 1154 aa4.75□□□□□ -1.65
NEDD4-201ENST00000338963 LCMT1Q9UIC8 334 aa4.75□□□□□ -1.65
NEDD4-201ENST00000338963 PAIP2BQ9ULR5 123 aaKnown RBP4.75□□□□□ -1.65
NEDD4-201ENST00000338963 FGD6Q6ZV73 1430 aa4.75□□□□□ -1.65
NEDD4-201ENST00000338963 BECN2A8MW95 431 aa4.75□□□□□ -1.65
NEDD4-201ENST00000338963 MYO1BO43795 1136 aa4.75□□□□□ -1.65
NEDD4-201ENST00000338963 CHGAP10645 457 aaKnown RBP4.75□□□□□ -1.65
NEDD4-201ENST00000338963 TRIM21P19474 475 aaKnown RBP4.75□□□□□ -1.65
NEDD4-201ENST00000338963 FOXD4L6Q3SYB3 417 aaPredicted RBP4.75□□□□□ -1.65
NEDD4-201ENST00000338963 ISM2Q6H9L7 571 aa4.75□□□□□ -1.65
NEDD4-201ENST00000338963 FOXD4L3Q6VB84 417 aaPredicted RBP4.75□□□□□ -1.65
NEDD4-201ENST00000338963 NOL8Q76FK4 1167 aaKnown RBP4.75□□□□□ -1.65
NEDD4-201ENST00000338963 TRMT2AQ8IZ69 625 aaKnown RBP4.75□□□□□ -1.65
NEDD4-201ENST00000338963 NUP62CLQ9H1M0 184 aa4.75□□□□□ -1.65
NEDD4-201ENST00000338963 FAM169AQ9Y6X4 670 aa4.75□□□□□ -1.65
NEDD4-201ENST00000338963 TOP2AP11388 1531 aaKnown RBP4.75□□□□□ -1.65
NEDD4-201ENST00000338963 RBM5P52756 815 aaKnown RBP eCLIP4.75□□□□□ -1.65
NEDD4-201ENST00000338963 APOBRQ0VD83 1088 aa4.75□□□□□ -1.65
NEDD4-201ENST00000338963 EXOC1Q9NV70 894 aa4.75□□□□□ -1.65
NEDD4-201ENST00000338963 NOL12Q9UGY1 213 aaKnown RBP eCLIP4.75□□□□□ -1.65
NEDD4-201ENST00000338963 CORO1CQ9ULV4 474 aaPredicted RBP4.75□□□□□ -1.65
NEDD4-201ENST00000338963 SFPQP23246 707 aaKnown RBP eCLIP4.75□□□□□ -1.65
NEDD4-201ENST00000338963 RAB27AP51159 221 aa4.75□□□□□ -1.65
NEDD4-201ENST00000338963 APBA1Q02410 837 aa4.75□□□□□ -1.65
NEDD4-201ENST00000338963 SESTD1Q86VW0 696 aa4.75□□□□□ -1.65
NEDD4-201ENST00000338963 C17orf53Q8N3J3 647 aaPredicted RBP4.75□□□□□ -1.65
NEDD4-201ENST00000338963 PDILTQ8N807 584 aa4.75□□□□□ -1.65
NEDD4-201ENST00000338963 JAKMIP1Q96N16 626 aaKnown RBP4.75□□□□□ -1.65
NEDD4-201ENST00000338963 PLEKHG4BQ96PX9 1271 aa4.75□□□□□ -1.65
NEDD4-201ENST00000338963 VCXQ9H320 206 aa4.75□□□□□ -1.65
NEDD4-201ENST00000338963 GMEB1Q9Y692 573 aa4.75□□□□□ -1.65
NEDD4-201ENST00000338963 BUB1BO60566 1050 aaPredicted RBP4.74□□□□□ -1.65
NEDD4-201ENST00000338963 HCLS1P14317 486 aaPredicted RBP4.74□□□□□ -1.65
NEDD4-201ENST00000338963 RANBP1P43487 201 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 LIG3P49916 1009 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 EVCP57679 992 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 USH1GQ495M9 461 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 IQCEQ6IPM2 695 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 RSPH3Q86UC2 560 aa4.74□□□□□ -1.65
NEDD4-201ENST00000338963 TBC1D31Q96DN5 1066 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms