RNA–Protein interactions for RNA: ENST00000331148.5

CLSTN3-202, Transcript of calsyntenin 3, humanhuman

TSL 1 (best)

Gene CLSTN3, Length 2,288 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-202ENST00000331148 DDX19AQ9NUU7 478 aaKnown RBP21.4■■□□□ 1.02
CLSTN3-202ENST00000331148 PLEKHG2Q9H7P9 1386 aa21.4■■□□□ 1.02
CLSTN3-202ENST00000331148 CCDC66A2RUB6 948 aa21.39■■□□□ 1.02
CLSTN3-202ENST00000331148 ME3Q16798 604 aa21.39■■□□□ 1.02
CLSTN3-202ENST00000331148 CDC37L1Q7L3B6 337 aa21.39■■□□□ 1.02
CLSTN3-202ENST00000331148 CLSTN2Q9H4D0 955 aa21.39■■□□□ 1.02
CLSTN3-202ENST00000331148 FERMT3Q86UX7 667 aa21.39■■□□□ 1.01
CLSTN3-202ENST00000331148 ZSWIM6Q9HCJ5 1215 aa21.39■■□□□ 1.01
CLSTN3-202ENST00000331148 FAM53CQ9NYF3 392 aa21.39■■□□□ 1.01
CLSTN3-202ENST00000331148 CYP46A1Q9Y6A2 500 aa21.39■■□□□ 1.01
CLSTN3-202ENST00000331148 ZBTB22O15209 634 aa21.38■■□□□ 1.01
CLSTN3-202ENST00000331148 UBTFL1P0CB47 393 aaPredicted RBP21.38■■□□□ 1.01
CLSTN3-202ENST00000331148 CDC25BP30305 580 aa21.38■■□□□ 1.01
CLSTN3-202ENST00000331148 LARP1BQ659C4 914 aaKnown RBP21.38■■□□□ 1.01
CLSTN3-202ENST00000331148 FAM173BQ6P4H8 233 aa21.38■■□□□ 1.01
CLSTN3-202ENST00000331148 NECAB1Q8N987 351 aa21.38■■□□□ 1.01
CLSTN3-202ENST00000331148 RHPN1Q8TCX5 695 aa21.38■■□□□ 1.01
CLSTN3-202ENST00000331148 TM6SF1Q9BZW5 370 aa21.38■■□□□ 1.01
CLSTN3-202ENST00000331148 USP44Q9H0E7 712 aa21.38■■□□□ 1.01
CLSTN3-202ENST00000331148 ZNF215Q9UL58 517 aaPredicted RBP21.38■■□□□ 1.01
CLSTN3-202ENST00000331148 SURF6O75683 361 aaKnown RBP21.37■■□□□ 1.01
CLSTN3-202ENST00000331148 TATP17735 454 aaPredicted RBP21.37■■□□□ 1.01
CLSTN3-202ENST00000331148 MPRIPQ6WCQ1 1025 aa21.37■■□□□ 1.01
CLSTN3-202ENST00000331148 ZNF165P49910 485 aa21.36■■□□□ 1.01
CLSTN3-202ENST00000331148 PTH1RQ03431 593 aa21.36■■□□□ 1.01
CLSTN3-202ENST00000331148 PRPF40BQ6NWY9 871 aaKnown RBP21.36■■□□□ 1.01
CLSTN3-202ENST00000331148 PXDNLA1KZ92 1463 aa21.36■■□□□ 1.01
CLSTN3-202ENST00000331148 CCDC30Q5VVM6 783 aa21.36■■□□□ 1.01
CLSTN3-202ENST00000331148 BCL11BQ9C0K0 894 aaPredicted RBP21.36■■□□□ 1.01
CLSTN3-202ENST00000331148 DNAJC25Q9H1X3 360 aa21.36■■□□□ 1.01
CLSTN3-202ENST00000331148 GOLGA6L4A6NEF3 574 aa21.35■■□□□ 1.01
CLSTN3-202ENST00000331148 USP27XA6NNY8 438 aa21.35■■□□□ 1.01
CLSTN3-202ENST00000331148 TEFQ10587 303 aa21.35■■□□□ 1.01
CLSTN3-202ENST00000331148 POLA2Q14181 598 aa21.35■■□□□ 1.01
CLSTN3-202ENST00000331148 NYAP1Q6ZVC0 841 aa21.35■■□□□ 1.01
CLSTN3-202ENST00000331148 KCNB2Q92953 911 aa21.35■■□□□ 1.01
CLSTN3-202ENST00000331148 SCAND2PQ9GZW5 306 aaPredicted RBP21.35■■□□□ 1.01
CLSTN3-202ENST00000331148 ROBO1Q9Y6N7 1651 aa21.35■■□□□ 1.01
CLSTN3-202ENST00000331148 ABCA3Q99758 1704 aa21.35■■□□□ 1.01
CLSTN3-202ENST00000331148 N4BP2Q86UW6 1770 aaPredicted RBP21.35■■□□□ 1.01
CLSTN3-202ENST00000331148 RNMTO43148 476 aaKnown RBP21.35■■□□□ 1.01
CLSTN3-202ENST00000331148 PDIA4P13667 645 aaKnown RBP21.35■■□□□ 1.01
CLSTN3-202ENST00000331148 KCNJ4P48050 445 aa21.35■■□□□ 1.01
CLSTN3-202ENST00000331148 FBXO38Q6PIJ6 1188 aa21.35■■□□□ 1.01
CLSTN3-202ENST00000331148 PPP1R42Q7Z4L9 355 aa21.35■■□□□ 1.01
CLSTN3-202ENST00000331148 LRRC8AQ8IWT6 810 aa21.35■■□□□ 1.01
CLSTN3-202ENST00000331148 SPATA32Q96LK8 384 aa21.35■■□□□ 1.01
CLSTN3-202ENST00000331148 NOL12Q9UGY1 213 aaKnown RBP eCLIP21.35■■□□□ 1.01
CLSTN3-202ENST00000331148 V9GYY5 206 aaPredicted RBP21.35■■□□□ 1.01
CLSTN3-202ENST00000331148 RBM6P78332 1123 aaKnown RBP21.34■■□□□ 1.01
CLSTN3-202ENST00000331148 KIF1BPQ96EK5 621 aa21.34■■□□□ 1.01
CLSTN3-202ENST00000331148 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.34■■□□□ 1.01
CLSTN3-202ENST00000331148 TPCN1Q9ULQ1 816 aa21.34■■□□□ 1.01
CLSTN3-202ENST00000331148 IRX5P78411 483 aaPredicted RBP21.34■■□□□ 1.01
CLSTN3-202ENST00000331148 SLFNL1Q499Z3 407 aa21.34■■□□□ 1.01
CLSTN3-202ENST00000331148 NECTIN2Q92692 538 aa21.34■■□□□ 1.01
CLSTN3-202ENST00000331148 ERO1AQ96HE7 468 aa21.34■■□□□ 1.01
CLSTN3-202ENST00000331148 PDCP20941 246 aa21.33■■□□□ 1.01
CLSTN3-202ENST00000331148 PTPN14Q15678 1187 aa21.33■■□□□ 1.01
CLSTN3-202ENST00000331148 LEO1Q8WVC0 666 aaPredicted RBP21.33■■□□□ 1.01
CLSTN3-202ENST00000331148 RUFY2Q8WXA3 655 aa21.33■■□□□ 1.01
CLSTN3-202ENST00000331148 WDR17Q8IZU2 1322 aa21.33■■□□□ 1
CLSTN3-202ENST00000331148 NEMFO60524 1076 aa21.32■■□□□ 1
CLSTN3-202ENST00000331148 ELF2Q15723 593 aa21.32■■□□□ 1
CLSTN3-202ENST00000331148 TIGD1Q96MW7 591 aa21.32■■□□□ 1
CLSTN3-202ENST00000331148 OVOS2A0A0G2JMS6 1433 aa21.32■■□□□ 1
CLSTN3-202ENST00000331148 NR1I2O75469 434 aa21.32■■□□□ 1
CLSTN3-202ENST00000331148 DDX54Q8TDD1 881 aaKnown RBP21.32■■□□□ 1
CLSTN3-202ENST00000331148 USP42Q9H9J4 1324 aaKnown RBP21.32■■□□□ 1
CLSTN3-202ENST00000331148 MEGF6O75095 1541 aa21.32■■□□□ 1
CLSTN3-202ENST00000331148 TOM1O60784 492 aa21.31■■□□□ 1
CLSTN3-202ENST00000331148 ARID5BQ14865 1188 aa21.31■■□□□ 1
CLSTN3-202ENST00000331148 SARM1Q6SZW1 724 aa21.31■■□□□ 1
CLSTN3-202ENST00000331148 TFIP11Q9UBB9 837 aaKnown RBP21.31■■□□□ 1
CLSTN3-202ENST00000331148 CAVIN2O95810 425 aa21.31■■□□□ 1
CLSTN3-202ENST00000331148 TOM1L2Q6ZVM7 507 aa21.3■■□□□ 1
CLSTN3-202ENST00000331148 MRFAP1L1Q96HT8 127 aa21.3■■□□□ 1
CLSTN3-202ENST00000331148 BTBD11A6QL63 1104 aa21.3■■□□□ 1
CLSTN3-202ENST00000331148 GLRX3O76003 335 aaKnown RBP21.3■■□□□ 1
CLSTN3-202ENST00000331148 SKILP12757 684 aa21.3■■□□□ 1
CLSTN3-202ENST00000331148 FAM193AP78312 1265 aa21.3■■□□□ 1
CLSTN3-202ENST00000331148 BICD2Q8TD16 824 aa21.3■■□□□ 1
CLSTN3-202ENST00000331148 COL5A2P05997 1499 aaPredicted RBP21.3■■□□□ 1
CLSTN3-202ENST00000331148 AHDC1Q5TGY3 1603 aaPredicted RBP21.3■■□□□ 1
CLSTN3-202ENST00000331148 TTC41PQ6P2S7 1318 aa21.29■■□□□ 1
CLSTN3-202ENST00000331148 SRGAP3O43295 1099 aa21.29■■□□□ 1
CLSTN3-202ENST00000331148 CDK11BP21127 795 aaKnown RBP21.29■■□□□ 1
CLSTN3-202ENST00000331148 NECTIN1Q15223 517 aa21.29■■□□□ 1
CLSTN3-202ENST00000331148 ST7Q9NRC1 585 aa21.29■■□□□ 1
CLSTN3-202ENST00000331148 ERICH4A6NGS2 130 aa21.29■■□□□ 1
CLSTN3-202ENST00000331148 ZKSCAN1P17029 563 aaPredicted RBP21.29■■□□□ 1
CLSTN3-202ENST00000331148 IQCB1Q15051 598 aa21.29■■□□□ 1
CLSTN3-202ENST00000331148 CREBRFQ8IUR6 639 aa21.29■■□□□ 1
CLSTN3-202ENST00000331148 PGBD1Q96JS3 809 aa21.29■■□□□ 1
CLSTN3-202ENST00000331148 GOLGA6L19H0YKK7 550 aa21.28■■□□□ 1
CLSTN3-202ENST00000331148 SLU7O95391 586 aaKnown RBP21.28■■□□□ 1
CLSTN3-202ENST00000331148 PHKG2P15735 406 aa21.28■■□□□ 1
CLSTN3-202ENST00000331148 IFNL2Q8IZJ0 200 aa21.28■■□□□ 1
CLSTN3-202ENST00000331148 ZNF446Q9NWS9 450 aa21.28■■□□□ 1
CLSTN3-202ENST00000331148 EVA1CP58658 441 aa21.27■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms