RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 XAGE3Q8WTP9 111 aa12.41□□□□□ -0.42
COL3A1-202ENST00000317840 TLR7Q9NYK1 1049 aaKnown RBP12.41□□□□□ -0.42
COL3A1-202ENST00000317840 SLAIN2Q9P270 581 aa12.41□□□□□ -0.42
COL3A1-202ENST00000317840 ZNF335Q9H4Z2 1342 aaPredicted RBP12.41□□□□□ -0.42
COL3A1-202ENST00000317840 GTF2E1P29083 439 aaPredicted RBP12.41□□□□□ -0.42
COL3A1-202ENST00000317840 CCDC73Q6ZRK6 1079 aa12.41□□□□□ -0.42
COL3A1-202ENST00000317840 DNAJC25Q9H1X3 360 aa12.41□□□□□ -0.42
COL3A1-202ENST00000317840 CEP170BQ9Y4F5 1589 aaPredicted RBP12.41□□□□□ -0.42
COL3A1-202ENST00000317840 PPP4R3BQ5MIZ7 849 aa12.41□□□□□ -0.42
COL3A1-202ENST00000317840 FILIP1Q7Z7B0 1213 aa12.41□□□□□ -0.42
COL3A1-202ENST00000317840 ARHGEF25Q86VW2 580 aa12.41□□□□□ -0.42
COL3A1-202ENST00000317840 GUCY1B3Q02153 619 aa12.4□□□□□ -0.42
COL3A1-202ENST00000317840 PDCL2Q8N4E4 241 aa12.4□□□□□ -0.42
COL3A1-202ENST00000317840 PYCARDQ9ULZ3 195 aa12.4□□□□□ -0.42
COL3A1-202ENST00000317840 SPDYE4A6NLX3 237 aa12.4□□□□□ -0.42
COL3A1-202ENST00000317840 DDX46Q7L014 1031 aaKnown RBP12.4□□□□□ -0.42
COL3A1-202ENST00000317840 BRF1Q92994 677 aa12.4□□□□□ -0.42
COL3A1-202ENST00000317840 TM6SF1Q9BZW5 370 aa12.4□□□□□ -0.42
COL3A1-202ENST00000317840 JAK2O60674 1132 aa12.4□□□□□ -0.42
COL3A1-202ENST00000317840 HOXB7P09629 217 aa12.4□□□□□ -0.42
COL3A1-202ENST00000317840 NEK1Q96PY6 1258 aa12.4□□□□□ -0.42
COL3A1-202ENST00000317840 DDX19AQ9NUU7 478 aaKnown RBP12.4□□□□□ -0.42
COL3A1-202ENST00000317840 CCT2P78371 535 aaKnown RBP12.39□□□□□ -0.43
COL3A1-202ENST00000317840 UBE3BQ7Z3V4 1068 aa12.39□□□□□ -0.43
COL3A1-202ENST00000317840 SDF4Q9BRK5 362 aa12.39□□□□□ -0.43
COL3A1-202ENST00000317840 TECPR2O15040 1411 aa12.39□□□□□ -0.43
COL3A1-202ENST00000317840 SPATA31D1Q6ZQQ2 1576 aa12.39□□□□□ -0.43
COL3A1-202ENST00000317840 KINO60870 393 aaKnown RBP12.39□□□□□ -0.43
COL3A1-202ENST00000317840 GIGYF1O75420 1035 aaPredicted RBP12.39□□□□□ -0.43
COL3A1-202ENST00000317840 ME1P48163 572 aa12.39□□□□□ -0.43
COL3A1-202ENST00000317840 KRT32Q14532 448 aa12.39□□□□□ -0.43
COL3A1-202ENST00000317840 NECTIN1Q15223 517 aa12.39□□□□□ -0.43
COL3A1-202ENST00000317840 CCDC129Q6ZRS4 1044 aa12.39□□□□□ -0.43
COL3A1-202ENST00000317840 ZCRB1Q8TBF4 217 aaKnown RBP12.39□□□□□ -0.43
COL3A1-202ENST00000317840 FMNL2Q96PY5 1086 aa12.39□□□□□ -0.43
COL3A1-202ENST00000317840 CLIP2Q9UDT6 1046 aa12.39□□□□□ -0.43
COL3A1-202ENST00000317840 RPS6KB1P23443 525 aa12.38□□□□□ -0.43
COL3A1-202ENST00000317840 CFAP45Q9UL16 551 aa12.38□□□□□ -0.43
COL3A1-202ENST00000317840 GPTP24298 496 aa12.38□□□□□ -0.43
COL3A1-202ENST00000317840 LRMPQ12912 555 aa12.38□□□□□ -0.43
COL3A1-202ENST00000317840 Q6ZUG5 572 aa12.38□□□□□ -0.43
COL3A1-202ENST00000317840 MAP4K1Q92918 833 aa12.38□□□□□ -0.43
COL3A1-202ENST00000317840 A0A087WZG4 1122 aa12.38□□□□□ -0.43
COL3A1-202ENST00000317840 RIOK3O14730 519 aaKnown RBP12.38□□□□□ -0.43
COL3A1-202ENST00000317840 SASH1O94885 1247 aa12.38□□□□□ -0.43
COL3A1-202ENST00000317840 PDIA4P13667 645 aaKnown RBP12.38□□□□□ -0.43
COL3A1-202ENST00000317840 ZHX1Q9UKY1 873 aaPredicted RBP12.38□□□□□ -0.43
COL3A1-202ENST00000317840 TNNT1P13805 278 aa12.37□□□□□ -0.43
COL3A1-202ENST00000317840 ZNF589Q86UQ0 364 aaPredicted RBP12.37□□□□□ -0.43
COL3A1-202ENST00000317840 LEO1Q8WVC0 666 aaPredicted RBP12.37□□□□□ -0.43
COL3A1-202ENST00000317840 ACSBG1Q96GR2 724 aa12.37□□□□□ -0.43
COL3A1-202ENST00000317840 ZNF496Q96IT1 587 aaPredicted RBP12.37□□□□□ -0.43
COL3A1-202ENST00000317840 CBX8Q9HC52 389 aa12.37□□□□□ -0.43
COL3A1-202ENST00000317840 TMOD3Q9NYL9 352 aa12.37□□□□□ -0.43
COL3A1-202ENST00000317840 CCDC94Q9BW85 323 aaPredicted RBP12.37□□□□□ -0.43
COL3A1-202ENST00000317840 BTG4Q9NY30 223 aa12.37□□□□□ -0.43
COL3A1-202ENST00000317840 CCDC112Q8NEF3 446 aa12.37□□□□□ -0.43
COL3A1-202ENST00000317840 HMG20BQ9P0W2 317 aa12.37□□□□□ -0.43
COL3A1-202ENST00000317840 DDX21Q9NR30 783 aaKnown RBP eCLIP12.37□□□□□ -0.43
COL3A1-202ENST00000317840 USP16Q9Y5T5 823 aa12.37□□□□□ -0.43
COL3A1-202ENST00000317840 ITSN1Q15811 1721 aa12.36□□□□□ -0.43
COL3A1-202ENST00000317840 NR1I2O75469 434 aa12.36□□□□□ -0.43
COL3A1-202ENST00000317840 ZNF790Q6PG37 636 aa12.36□□□□□ -0.43
COL3A1-202ENST00000317840 ANKRD13DQ6ZTN6 518 aa12.36□□□□□ -0.43
COL3A1-202ENST00000317840 KIAA1524Q8TCG1 905 aa12.36□□□□□ -0.43
COL3A1-202ENST00000317840 SEC62Q99442 399 aaKnown RBP12.36□□□□□ -0.43
COL3A1-202ENST00000317840 BCL2L12Q9HB09 334 aa12.36□□□□□ -0.43
COL3A1-202ENST00000317840 ADCY9O60503 1353 aa12.36□□□□□ -0.43
COL3A1-202ENST00000317840 NRBP1Q9UHY1 535 aa12.36□□□□□ -0.43
COL3A1-202ENST00000317840 TAF6LQ9Y6J9 622 aa12.36□□□□□ -0.43
COL3A1-202ENST00000317840 TFCP2Q12800 502 aa12.36□□□□□ -0.43
COL3A1-202ENST00000317840 MRVI1Q9Y6F6 885 aa12.36□□□□□ -0.43
COL3A1-202ENST00000317840 GOLIM4O00461 696 aa12.35□□□□□ -0.43
COL3A1-202ENST00000317840 SNRPA1P09661 255 aaKnown RBP12.35□□□□□ -0.43
COL3A1-202ENST00000317840 GNL2Q13823 731 aaKnown RBP12.35□□□□□ -0.43
COL3A1-202ENST00000317840 WASHC4Q2M389 1173 aa12.35□□□□□ -0.43
COL3A1-202ENST00000317840 CHST3Q7LGC8 479 aa12.35□□□□□ -0.43
COL3A1-202ENST00000317840 TRMT1Q9NXH9 659 aaKnown RBP12.35□□□□□ -0.43
COL3A1-202ENST00000317840 TCHHQ07283 1943 aa12.35□□□□□ -0.43
COL3A1-202ENST00000317840 NRDCO43847 1150 aa12.35□□□□□ -0.43
COL3A1-202ENST00000317840 NRKQ7Z2Y5 1582 aa12.35□□□□□ -0.43
COL3A1-202ENST00000317840 CPLX1O14810 134 aa12.35□□□□□ -0.43
COL3A1-202ENST00000317840 A1BGP04217 495 aa12.35□□□□□ -0.43
COL3A1-202ENST00000317840 U3KPZ7 1027 aaPredicted RBP12.35□□□□□ -0.43
COL3A1-202ENST00000317840 COL9A3Q14050 684 aaPredicted RBP12.34□□□□□ -0.43
COL3A1-202ENST00000317840 CCAR1Q8IX12 1150 aaKnown RBP12.34□□□□□ -0.43
COL3A1-202ENST00000317840 DBNDD2Q9BQY9 259 aa12.34□□□□□ -0.43
COL3A1-202ENST00000317840 RIMS1Q86UR5 1692 aaKnown RBP12.34□□□□□ -0.43
COL3A1-202ENST00000317840 AP5Z1O43299 807 aa12.34□□□□□ -0.43
COL3A1-202ENST00000317840 MTX1Q13505 466 aa12.34□□□□□ -0.43
COL3A1-202ENST00000317840 FKBP4Q02790 459 aaKnown RBP eCLIP12.34□□□□□ -0.43
COL3A1-202ENST00000317840 MEX3CQ5U5Q3 659 aaKnown RBP12.34□□□□□ -0.43
COL3A1-202ENST00000317840 ERCC4Q92889 916 aaPredicted RBP12.34□□□□□ -0.43
COL3A1-202ENST00000317840 IGSF3O75054 1194 aa12.33□□□□□ -0.44
COL3A1-202ENST00000317840 BICDL1Q6ZP65 573 aa12.33□□□□□ -0.44
COL3A1-202ENST00000317840 A0A087WWV3 80 aa12.33□□□□□ -0.44
COL3A1-202ENST00000317840 TAF5LO75529 589 aa12.33□□□□□ -0.44
COL3A1-202ENST00000317840 SMC2O95347 1197 aa12.33□□□□□ -0.44
COL3A1-202ENST00000317840 CHGBP05060 677 aa12.33□□□□□ -0.44
COL3A1-202ENST00000317840 APOBRQ0VD83 1088 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms