RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 PGBD1Q96JS3 809 aa15.9■□□□□ 0.14
SKA3-202ENST00000314759 C16orf45Q96MC5 204 aaPredicted RBP15.9■□□□□ 0.14
SKA3-202ENST00000314759 TRIM5Q9C035 493 aa15.9■□□□□ 0.14
SKA3-202ENST00000314759 GRM8O00222 908 aa15.9■□□□□ 0.14
SKA3-202ENST00000314759 ZNF75DP51815 510 aa15.9■□□□□ 0.14
SKA3-202ENST00000314759 DRC7Q8IY82 874 aa15.9■□□□□ 0.14
SKA3-202ENST00000314759 HDAC5Q9UQL6 1122 aa15.9■□□□□ 0.14
SKA3-202ENST00000314759 MED23Q9ULK4 1368 aa15.9■□□□□ 0.14
SKA3-202ENST00000314759 ZSCAN25Q6NSZ9 544 aa15.89■□□□□ 0.13
SKA3-202ENST00000314759 TDRD7Q8NHU6 1098 aaKnown RBP15.89■□□□□ 0.13
SKA3-202ENST00000314759 SIL1Q9H173 461 aa15.89■□□□□ 0.13
SKA3-202ENST00000314759 ADGRL3Q9HAR2 1447 aa15.89■□□□□ 0.13
SKA3-202ENST00000314759 SETD1BQ9UPS6 1966 aaKnown RBP15.89■□□□□ 0.13
SKA3-202ENST00000314759 LINS1Q8NG48 757 aa15.88■□□□□ 0.13
SKA3-202ENST00000314759 LRRC59Q96AG4 307 aaKnown RBP15.88■□□□□ 0.13
SKA3-202ENST00000314759 USP54Q70EL1 1684 aa15.88■□□□□ 0.13
SKA3-202ENST00000314759 JAK2O60674 1132 aa15.88■□□□□ 0.13
SKA3-202ENST00000314759 ZNF165P49910 485 aa15.88■□□□□ 0.13
SKA3-202ENST00000314759 TSGA10IPQ3SY00 556 aa15.88■□□□□ 0.13
SKA3-202ENST00000314759 DNAJC25Q9H1X3 360 aa15.88■□□□□ 0.13
SKA3-202ENST00000314759 UTYO14607 1347 aa15.88■□□□□ 0.13
SKA3-202ENST00000314759 RNMTO43148 476 aaKnown RBP15.88■□□□□ 0.13
SKA3-202ENST00000314759 KCNA6P17658 529 aa15.88■□□□□ 0.13
SKA3-202ENST00000314759 KLHDC4Q8TBB5 520 aa15.88■□□□□ 0.13
SKA3-202ENST00000314759 TAF5LO75529 589 aa15.87■□□□□ 0.13
SKA3-202ENST00000314759 BICD2Q8TD16 824 aa15.87■□□□□ 0.13
SKA3-202ENST00000314759 EDC3Q96F86 508 aaKnown RBP15.87■□□□□ 0.13
SKA3-202ENST00000314759 HMG20BQ9P0W2 317 aa15.87■□□□□ 0.13
SKA3-202ENST00000314759 CTNNA3Q9UI47 895 aa15.87■□□□□ 0.13
SKA3-202ENST00000314759 JCADQ9P266 1359 aa15.87■□□□□ 0.13
SKA3-202ENST00000314759 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.87■□□□□ 0.13
SKA3-202ENST00000314759 FEZ1Q99689 392 aa15.87■□□□□ 0.13
SKA3-202ENST00000314759 OGFRQ9NZT2 677 aa15.87■□□□□ 0.13
SKA3-202ENST00000314759 LTN1O94822 1766 aa15.87■□□□□ 0.13
SKA3-202ENST00000314759 HEG1Q9ULI3 1381 aa15.86■□□□□ 0.13
SKA3-202ENST00000314759 PLEKHO1Q53GL0 409 aaPredicted RBP15.86■□□□□ 0.13
SKA3-202ENST00000314759 ZNF771Q7L3S4 317 aaPredicted RBP15.86■□□□□ 0.13
SKA3-202ENST00000314759 DDX11Q96FC9 970 aa15.86■□□□□ 0.13
SKA3-202ENST00000314759 ARHGAP23Q9P227 1491 aa15.86■□□□□ 0.13
SKA3-202ENST00000314759 RESTQ13127 1097 aa15.86■□□□□ 0.13
SKA3-202ENST00000314759 CACTINQ8WUQ7 758 aaKnown RBP15.86■□□□□ 0.13
SKA3-202ENST00000314759 GTF3C6Q969F1 213 aa15.86■□□□□ 0.13
SKA3-202ENST00000314759 SLIT1O75093 1534 aa15.86■□□□□ 0.13
SKA3-202ENST00000314759 AIMP1Q12904 312 aaKnown RBP15.85■□□□□ 0.13
SKA3-202ENST00000314759 USPL1Q5W0Q7 1092 aa15.85■□□□□ 0.13
SKA3-202ENST00000314759 CLIP2Q9UDT6 1046 aa15.85■□□□□ 0.13
SKA3-202ENST00000314759 TNNT1P13805 278 aa15.85■□□□□ 0.13
SKA3-202ENST00000314759 CCDC144BQ3MJ40 725 aa15.85■□□□□ 0.13
SKA3-202ENST00000314759 CCDC144CPQ8IYA2 1237 aa15.85■□□□□ 0.13
SKA3-202ENST00000314759 BRF1Q92994 677 aa15.85■□□□□ 0.13
SKA3-202ENST00000314759 COL15A1P39059 1388 aa15.85■□□□□ 0.13
SKA3-202ENST00000314759 SMTNL1A8MU46 457 aa15.84■□□□□ 0.13
SKA3-202ENST00000314759 IGKV5-2P06315 115 aa15.84■□□□□ 0.13
SKA3-202ENST00000314759 LMO7Q8WWI1 1683 aa15.84■□□□□ 0.13
SKA3-202ENST00000314759 C1orf141Q5JVX7 400 aa15.84■□□□□ 0.13
SKA3-202ENST00000314759 PLPPR3Q6T4P5 718 aa15.84■□□□□ 0.13
SKA3-202ENST00000314759 PHF8Q9UPP1 1060 aa15.84■□□□□ 0.13
SKA3-202ENST00000314759 PXDNQ92626 1479 aa15.83■□□□□ 0.13
SKA3-202ENST00000314759 NEK1Q96PY6 1258 aa15.83■□□□□ 0.12
SKA3-202ENST00000314759 CGNQ9P2M7 1197 aaKnown RBP15.83■□□□□ 0.12
SKA3-202ENST00000314759 NFAT5O94916 1531 aa15.83■□□□□ 0.12
SKA3-202ENST00000314759 CHGBP05060 677 aa15.83■□□□□ 0.12
SKA3-202ENST00000314759 KRT32Q14532 448 aa15.83■□□□□ 0.12
SKA3-202ENST00000314759 PDIA6Q15084 440 aa15.83■□□□□ 0.12
SKA3-202ENST00000314759 AMOTQ4VCS5 1084 aa15.83■□□□□ 0.12
SKA3-202ENST00000314759 H3BQV1 296 aa15.82■□□□□ 0.12
SKA3-202ENST00000314759 DDX58O95786 925 aaKnown RBP15.82■□□□□ 0.12
SKA3-202ENST00000314759 FGD1P98174 961 aa15.82■□□□□ 0.12
SKA3-202ENST00000314759 IQCB1Q15051 598 aa15.82■□□□□ 0.12
SKA3-202ENST00000314759 IFFO2Q5TF58 517 aa15.82■□□□□ 0.12
SKA3-202ENST00000314759 Q6ZUG5 572 aa15.82■□□□□ 0.12
SKA3-202ENST00000314759 DDX21Q9NR30 783 aaKnown RBP eCLIP15.82■□□□□ 0.12
SKA3-202ENST00000314759 RGPD2P0DJD1 1756 aa15.82■□□□□ 0.12
SKA3-202ENST00000314759 CEBPZQ03701 1054 aaKnown RBP15.82■□□□□ 0.12
SKA3-202ENST00000314759 EPHA10Q5JZY3 1008 aa15.82■□□□□ 0.12
SKA3-202ENST00000314759 DDX41Q9UJV9 622 aaKnown RBP15.82■□□□□ 0.12
SKA3-202ENST00000314759 NDUFB9Q9Y6M9 179 aa15.82■□□□□ 0.12
SKA3-202ENST00000314759 CAVIN2O95810 425 aa15.81■□□□□ 0.12
SKA3-202ENST00000314759 CDC25BP30305 580 aa15.81■□□□□ 0.12
SKA3-202ENST00000314759 SYCP1Q15431 976 aa15.81■□□□□ 0.12
SKA3-202ENST00000314759 TPD52L1Q16890 204 aaPredicted RBP15.81■□□□□ 0.12
SKA3-202ENST00000314759 SLFN14P0C7P3 912 aa15.81■□□□□ 0.12
SKA3-202ENST00000314759 ADD1P35611 737 aaKnown RBP15.81■□□□□ 0.12
SKA3-202ENST00000314759 C11orf57Q6ZUT1 292 aaPredicted RBP15.81■□□□□ 0.12
SKA3-202ENST00000314759 ZNF592Q92610 1267 aa15.81■□□□□ 0.12
SKA3-202ENST00000314759 ZSCAN16Q9H4T2 348 aaPredicted RBP15.81■□□□□ 0.12
SKA3-202ENST00000314759 DBNLQ9UJU6 430 aaKnown RBP15.81■□□□□ 0.12
SKA3-202ENST00000314759 CFAP45Q9UL16 551 aa15.81■□□□□ 0.12
SKA3-202ENST00000314759 PAXBP1Q9Y5B6 917 aa15.81■□□□□ 0.12
SKA3-202ENST00000314759 ZBTB22O15209 634 aa15.81■□□□□ 0.12
SKA3-202ENST00000314759 SCRN1Q12765 414 aa15.81■□□□□ 0.12
SKA3-202ENST00000314759 ARID5BQ14865 1188 aa15.81■□□□□ 0.12
SKA3-202ENST00000314759 CCDC129Q6ZRS4 1044 aa15.81■□□□□ 0.12
SKA3-202ENST00000314759 LRRC8AQ8IWT6 810 aa15.81■□□□□ 0.12
SKA3-202ENST00000314759 CYP21A2P08686 494 aa15.8■□□□□ 0.12
SKA3-202ENST00000314759 HSP90B1P14625 803 aaKnown RBP15.8■□□□□ 0.12
SKA3-202ENST00000314759 ATP5JP18859 108 aa15.8■□□□□ 0.12
SKA3-202ENST00000314759 SARM1Q6SZW1 724 aa15.8■□□□□ 0.12
SKA3-202ENST00000314759 RIC3Q7Z5B4 369 aa15.8■□□□□ 0.12
SKA3-202ENST00000314759 SEC62Q99442 399 aaKnown RBP15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 289.7 ms