RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 MYCBPQ99417 103 aaPredicted RBP6□□□□□ -1.45
SCN1A-201ENST00000303395 FAM114A2Q9NRY5 505 aa6□□□□□ -1.45
SCN1A-201ENST00000303395 BMP2KQ9NSY1 1161 aaPredicted RBP6□□□□□ -1.45
SCN1A-201ENST00000303395 AKAP2Q9Y2D5 859 aa6□□□□□ -1.45
SCN1A-201ENST00000303395 ZNF189O75820 626 aaPredicted RBP5.99□□□□□ -1.45
SCN1A-201ENST00000303395 RIPPLY1Q0D2K3 151 aa5.99□□□□□ -1.45
SCN1A-201ENST00000303395 YY1AP1Q9H869 796 aa5.99□□□□□ -1.45
SCN1A-201ENST00000303395 MAGEF1Q9HAY2 307 aa5.99□□□□□ -1.45
SCN1A-201ENST00000303395 EXOC4Q96A65 974 aa5.99□□□□□ -1.45
SCN1A-201ENST00000303395 ARHGAP6O43182 974 aa5.99□□□□□ -1.45
SCN1A-201ENST00000303395 TNNT1P13805 278 aa5.99□□□□□ -1.45
SCN1A-201ENST00000303395 DMTNQ08495 405 aa5.99□□□□□ -1.45
SCN1A-201ENST00000303395 MTMR3Q13615 1198 aa5.99□□□□□ -1.45
SCN1A-201ENST00000303395 GFM2Q969S9 779 aaKnown RBP5.99□□□□□ -1.45
SCN1A-201ENST00000303395 PLB1Q6P1J6 1458 aa5.99□□□□□ -1.45
SCN1A-201ENST00000303395 ZSCAN22P10073 491 aaPredicted RBP5.99□□□□□ -1.45
SCN1A-201ENST00000303395 AMPD3Q01432 767 aa5.99□□□□□ -1.45
SCN1A-201ENST00000303395 PPP1R2P3Q6NXS1 205 aa5.99□□□□□ -1.45
SCN1A-201ENST00000303395 GPR161Q8N6U8 529 aaKnown RBP5.99□□□□□ -1.45
SCN1A-201ENST00000303395 GLT8D2Q9H1C3 349 aa5.99□□□□□ -1.45
SCN1A-201ENST00000303395 CLIP2Q9UDT6 1046 aa5.99□□□□□ -1.45
SCN1A-201ENST00000303395 STX6O43752 255 aa5.99□□□□□ -1.45
SCN1A-201ENST00000303395 IRX4P78413 519 aa5.99□□□□□ -1.45
SCN1A-201ENST00000303395 CWC25Q9NXE8 425 aaPredicted RBP5.99□□□□□ -1.45
SCN1A-201ENST00000303395 CEP170Q5SW79 1584 aa5.99□□□□□ -1.45
SCN1A-201ENST00000303395 ZNF518AQ6AHZ1 1483 aa5.99□□□□□ -1.45
SCN1A-201ENST00000303395 FKBP15Q5T1M5 1219 aa5.99□□□□□ -1.45
SCN1A-201ENST00000303395 GOLGA5Q8TBA6 731 aa5.99□□□□□ -1.45
SCN1A-201ENST00000303395 TSNARE1Q96NA8 513 aa5.99□□□□□ -1.45
SCN1A-201ENST00000303395 MTA3Q9BTC8 594 aa5.99□□□□□ -1.45
SCN1A-201ENST00000303395 PDILTQ8N807 584 aa5.99□□□□□ -1.45
SCN1A-201ENST00000303395 PDRG1Q9NUG6 133 aa5.99□□□□□ -1.45
SCN1A-201ENST00000303395 GNL3LQ9NVN8 582 aaKnown RBP5.99□□□□□ -1.45
SCN1A-201ENST00000303395 BCAP29Q9UHQ4 241 aa5.99□□□□□ -1.45
SCN1A-201ENST00000303395 MYL1P05976 194 aa5.98□□□□□ -1.45
SCN1A-201ENST00000303395 CYLC1P35663 651 aaPredicted RBP5.98□□□□□ -1.45
SCN1A-201ENST00000303395 SPA17Q15506 151 aa5.98□□□□□ -1.45
SCN1A-201ENST00000303395 ZSCAN23Q3MJ62 389 aa5.98□□□□□ -1.45
SCN1A-201ENST00000303395 NAA16Q6N069 864 aaPredicted RBP5.98□□□□□ -1.45
SCN1A-201ENST00000303395 SLC4A10Q6U841 1118 aa5.98□□□□□ -1.45
SCN1A-201ENST00000303395 ANKRD44Q8N8A2 993 aa5.98□□□□□ -1.45
SCN1A-201ENST00000303395 PSMD1Q99460 953 aa5.98□□□□□ -1.45
SCN1A-201ENST00000303395 UNC13AQ9UPW8 1703 aa5.98□□□□□ -1.45
SCN1A-201ENST00000303395 EVI5O60447 810 aa5.98□□□□□ -1.45
SCN1A-201ENST00000303395 TOP1P11387 765 aaKnown RBP5.98□□□□□ -1.45
SCN1A-201ENST00000303395 DRP2Q13474 957 aa5.98□□□□□ -1.45
SCN1A-201ENST00000303395 CCDC89Q8N998 374 aa5.98□□□□□ -1.45
SCN1A-201ENST00000303395 CTAGE15A4D2H0 777 aa5.98□□□□□ -1.45
SCN1A-201ENST00000303395 KIF3CO14782 793 aa5.98□□□□□ -1.45
SCN1A-201ENST00000303395 SERPINC1P01008 464 aa5.98□□□□□ -1.45
SCN1A-201ENST00000303395 CTAGE8P0CG41 777 aa5.98□□□□□ -1.45
SCN1A-201ENST00000303395 TTF1Q15361 905 aaPredicted RBP5.98□□□□□ -1.45
SCN1A-201ENST00000303395 USP37Q86T82 979 aa5.98□□□□□ -1.45
SCN1A-201ENST00000303395 CTAGE6Q86UF2 777 aa5.98□□□□□ -1.45
SCN1A-201ENST00000303395 CTAGE4Q8IX94 777 aa5.98□□□□□ -1.45
SCN1A-201ENST00000303395 DCTPP1Q9H773 170 aa5.98□□□□□ -1.45
SCN1A-201ENST00000303395 PLEKHG1Q9ULL1 1385 aa5.98□□□□□ -1.45
SCN1A-201ENST00000303395 TRPM2O94759 1503 aa5.98□□□□□ -1.45
SCN1A-201ENST00000303395 ZNF165P49910 485 aa5.98□□□□□ -1.45
SCN1A-201ENST00000303395 PPP4R3AQ6IN85 833 aa5.98□□□□□ -1.45
SCN1A-201ENST00000303395 TEX2Q8IWB9 1127 aa5.98□□□□□ -1.45
SCN1A-201ENST00000303395 C3orf20Q8ND61 904 aa5.98□□□□□ -1.45
SCN1A-201ENST00000303395 RUNDC3BQ96NL0 473 aa5.98□□□□□ -1.45
SCN1A-201ENST00000303395 PPP1R12CQ9BZL4 782 aa5.98□□□□□ -1.45
SCN1A-201ENST00000303395 RUFY4Q6ZNE9 571 aa5.98□□□□□ -1.45
SCN1A-201ENST00000303395 DTNBP1Q96EV8 351 aa5.98□□□□□ -1.45
SCN1A-201ENST00000303395 PLEKHO1Q53GL0 409 aaPredicted RBP5.98□□□□□ -1.45
SCN1A-201ENST00000303395 MCTP2Q6DN12 878 aa5.98□□□□□ -1.45
SCN1A-201ENST00000303395 EFCAB13Q8IY85 973 aa5.98□□□□□ -1.45
SCN1A-201ENST00000303395 PLCH2O75038 1416 aa5.98□□□□□ -1.45
SCN1A-201ENST00000303395 VWA3BQ502W6 1294 aa5.97□□□□□ -1.45
SCN1A-201ENST00000303395 TTC5Q8N0Z6 440 aa5.97□□□□□ -1.45
SCN1A-201ENST00000303395 GBP7Q8N8V2 638 aaPredicted RBP5.97□□□□□ -1.45
SCN1A-201ENST00000303395 SEC62Q99442 399 aaKnown RBP5.97□□□□□ -1.45
SCN1A-201ENST00000303395 CCDC77Q9BR77 488 aa5.97□□□□□ -1.45
SCN1A-201ENST00000303395 CPSF1Q10570 1443 aaKnown RBP5.97□□□□□ -1.45
SCN1A-201ENST00000303395 ADGRL3Q9HAR2 1447 aa5.97□□□□□ -1.45
SCN1A-201ENST00000303395 KRT86O43790 486 aa5.97□□□□□ -1.45
SCN1A-201ENST00000303395 CASQ1P31415 396 aa5.97□□□□□ -1.45
SCN1A-201ENST00000303395 CCDC40Q4G0X9 1142 aa5.97□□□□□ -1.45
SCN1A-201ENST00000303395 STXBP4Q6ZWJ1 553 aa5.97□□□□□ -1.45
SCN1A-201ENST00000303395 ARHGAP24Q8N264 748 aa5.97□□□□□ -1.45
SCN1A-201ENST00000303395 WDR66Q8TBY9 1149 aa5.97□□□□□ -1.45
SCN1A-201ENST00000303395 CCDC110Q8TBZ0 833 aa5.97□□□□□ -1.45
SCN1A-201ENST00000303395 LNPKQ9C0E8 428 aa5.97□□□□□ -1.45
SCN1A-201ENST00000303395 CPSF2Q9P2I0 782 aaKnown RBP5.97□□□□□ -1.45
SCN1A-201ENST00000303395 PZPP20742 1482 aa5.97□□□□□ -1.45
SCN1A-201ENST00000303395 RGS12O14924 1447 aa5.97□□□□□ -1.45
SCN1A-201ENST00000303395 AMPHP49418 695 aa5.97□□□□□ -1.45
SCN1A-201ENST00000303395 RNASELQ05823 741 aaKnown RBP5.97□□□□□ -1.45
SCN1A-201ENST00000303395 FKBP5Q13451 457 aaPredicted RBP5.97□□□□□ -1.45
SCN1A-201ENST00000303395 SEPT2Q15019 361 aa5.97□□□□□ -1.45
SCN1A-201ENST00000303395 LARSQ9P2J5 1176 aaKnown RBP5.97□□□□□ -1.45
SCN1A-201ENST00000303395 EFCAB8A8MWE9 144 aa5.97□□□□□ -1.45
SCN1A-201ENST00000303395 VIMP08670 466 aaKnown RBP5.97□□□□□ -1.45
SCN1A-201ENST00000303395 TTC31Q49AM3 519 aaPredicted RBP5.97□□□□□ -1.45
SCN1A-201ENST00000303395 KCNH5Q8NCM2 988 aa5.97□□□□□ -1.45
SCN1A-201ENST00000303395 NUP58Q9BVL2 599 aa5.97□□□□□ -1.45
SCN1A-201ENST00000303395 LCMT1Q9UIC8 334 aa5.97□□□□□ -1.45
SCN1A-201ENST00000303395 RASAL2Q9UJF2 1139 aa5.97□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms