RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 OAS2P29728 719 aaKnown RBP15.81■□□□□ 0.12
SKA3-201ENST00000298260 OS9Q13438 667 aaPredicted RBP15.81■□□□□ 0.12
SKA3-201ENST00000298260 CREB3L3Q68CJ9 461 aa15.81■□□□□ 0.12
SKA3-201ENST00000298260 SPATA31D1Q6ZQQ2 1576 aa15.81■□□□□ 0.12
SKA3-201ENST00000298260 ZSCAN31Q96LW9 406 aaPredicted RBP15.81■□□□□ 0.12
SKA3-201ENST00000298260 ANKRD65E5RJM6 399 aa15.8■□□□□ 0.12
SKA3-201ENST00000298260 HAP1P54257 671 aaPredicted RBP15.8■□□□□ 0.12
SKA3-201ENST00000298260 TMCO3Q6UWJ1 677 aa15.8■□□□□ 0.12
SKA3-201ENST00000298260 TMC6Q7Z403 805 aa15.8■□□□□ 0.12
SKA3-201ENST00000298260 LRRC2Q9BYS8 371 aa15.8■□□□□ 0.12
SKA3-201ENST00000298260 ADCY9O60503 1353 aa15.8■□□□□ 0.12
SKA3-201ENST00000298260 ZRANB2O95218 330 aaKnown RBP eCLIP15.8■□□□□ 0.12
SKA3-201ENST00000298260 SMC2O95347 1197 aa15.8■□□□□ 0.12
SKA3-201ENST00000298260 CDC25BP30305 580 aa15.8■□□□□ 0.12
SKA3-201ENST00000298260 MTHFSDQ2M296 383 aaKnown RBP15.8■□□□□ 0.12
SKA3-201ENST00000298260 BRF1Q92994 677 aa15.8■□□□□ 0.12
SKA3-201ENST00000298260 L2HGDHQ9H9P8 463 aa15.8■□□□□ 0.12
SKA3-201ENST00000298260 MYO1CO00159 1063 aa15.79■□□□□ 0.12
SKA3-201ENST00000298260 NECTIN1Q15223 517 aa15.79■□□□□ 0.12
SKA3-201ENST00000298260 CCDC93Q567U6 631 aa15.79■□□□□ 0.12
SKA3-201ENST00000298260 ISM2Q6H9L7 571 aa15.79■□□□□ 0.12
SKA3-201ENST00000298260 CCAR1Q8IX12 1150 aaKnown RBP15.79■□□□□ 0.12
SKA3-201ENST00000298260 UBXN4Q92575 508 aa15.79■□□□□ 0.12
SKA3-201ENST00000298260 CARD6Q9BX69 1037 aa15.79■□□□□ 0.12
SKA3-201ENST00000298260 ORC3Q9UBD5 711 aaPredicted RBP15.79■□□□□ 0.12
SKA3-201ENST00000298260 TTC21BQ7Z4L5 1316 aa15.79■□□□□ 0.12
SKA3-201ENST00000298260 BIN1O00499 593 aa15.79■□□□□ 0.12
SKA3-201ENST00000298260 HTATSF1O43719 755 aaKnown RBP15.79■□□□□ 0.12
SKA3-201ENST00000298260 URI1O94763 535 aaPredicted RBP15.79■□□□□ 0.12
SKA3-201ENST00000298260 ZSCAN26Q16670 478 aa15.79■□□□□ 0.12
SKA3-201ENST00000298260 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.79■□□□□ 0.12
SKA3-201ENST00000298260 ATP7BP35670 1465 aa15.78■□□□□ 0.12
SKA3-201ENST00000298260 SSH3Q8TE77 659 aa15.78■□□□□ 0.12
SKA3-201ENST00000298260 PA2G4Q9UQ80 394 aaKnown RBP15.78■□□□□ 0.12
SKA3-201ENST00000298260 ZKSCAN1P17029 563 aaPredicted RBP15.78■□□□□ 0.12
SKA3-201ENST00000298260 TOB2Q14106 344 aaPredicted RBP15.78■□□□□ 0.12
SKA3-201ENST00000298260 SARM1Q6SZW1 724 aa15.78■□□□□ 0.12
SKA3-201ENST00000298260 XPO4Q9C0E2 1151 aaKnown RBP15.78■□□□□ 0.12
SKA3-201ENST00000298260 RASSF4Q9H2L5 321 aa15.78■□□□□ 0.12
SKA3-201ENST00000298260 IFNKQ9P0W0 207 aa15.78■□□□□ 0.12
SKA3-201ENST00000298260 CRB1P82279 1406 aa15.78■□□□□ 0.12
SKA3-201ENST00000298260 ANXA1P04083 346 aa15.77■□□□□ 0.12
SKA3-201ENST00000298260 CHGBP05060 677 aa15.77■□□□□ 0.12
SKA3-201ENST00000298260 GUCY1B3Q02153 619 aa15.77■□□□□ 0.12
SKA3-201ENST00000298260 STX1AQ16623 288 aa15.77■□□□□ 0.11
SKA3-201ENST00000298260 TOMM22Q9NS69 142 aa15.77■□□□□ 0.11
SKA3-201ENST00000298260 AATKQ6ZMQ8 1374 aa15.77■□□□□ 0.11
SKA3-201ENST00000298260 SLC27A2O14975 620 aa15.76■□□□□ 0.11
SKA3-201ENST00000298260 LMAN1P49257 510 aa15.76■□□□□ 0.11
SKA3-201ENST00000298260 TEX35Q5T0J7 233 aa15.76■□□□□ 0.11
SKA3-201ENST00000298260 SIL1Q9H173 461 aa15.76■□□□□ 0.11
SKA3-201ENST00000298260 FER1L4A9Z1Z3 1794 aa15.76■□□□□ 0.11
SKA3-201ENST00000298260 NEMFO60524 1076 aa15.76■□□□□ 0.11
SKA3-201ENST00000298260 TBC1D8O95759 1140 aa15.76■□□□□ 0.11
SKA3-201ENST00000298260 NMIQ13287 307 aaPredicted RBP15.76■□□□□ 0.11
SKA3-201ENST00000298260 GNL2Q13823 731 aaKnown RBP15.76■□□□□ 0.11
SKA3-201ENST00000298260 FOXR1Q6PIV2 292 aa15.76■□□□□ 0.11
SKA3-201ENST00000298260 CPS1P31327 1500 aa15.76■□□□□ 0.11
SKA3-201ENST00000298260 TMEM2Q9UHN6 1383 aa15.76■□□□□ 0.11
SKA3-201ENST00000298260 H3BQV1 296 aa15.76■□□□□ 0.11
SKA3-201ENST00000298260 IFFO2Q5TF58 517 aa15.76■□□□□ 0.11
SKA3-201ENST00000298260 MNS1Q8NEH6 495 aa15.76■□□□□ 0.11
SKA3-201ENST00000298260 ZSWIM4Q9H7M6 989 aa15.76■□□□□ 0.11
SKA3-201ENST00000298260 C3P01024 1663 aa15.76■□□□□ 0.11
SKA3-201ENST00000298260 ALKQ9UM73 1620 aa15.75■□□□□ 0.11
SKA3-201ENST00000298260 EIF2S2P20042 333 aaKnown RBP15.75■□□□□ 0.11
SKA3-201ENST00000298260 PDCP20941 246 aa15.75■□□□□ 0.11
SKA3-201ENST00000298260 RESTQ13127 1097 aa15.75■□□□□ 0.11
SKA3-201ENST00000298260 BLOC1S2Q6QNY1 142 aa15.75■□□□□ 0.11
SKA3-201ENST00000298260 REXO1L1PQ8IX06 675 aa15.75■□□□□ 0.11
SKA3-201ENST00000298260 SEC62Q99442 399 aaKnown RBP15.75■□□□□ 0.11
SKA3-201ENST00000298260 AOX1Q06278 1338 aa15.75■□□□□ 0.11
SKA3-201ENST00000298260 A0A0D9SFI3 127 aa15.75■□□□□ 0.11
SKA3-201ENST00000298260 DHX16O60231 1041 aaKnown RBP15.75■□□□□ 0.11
SKA3-201ENST00000298260 SMC1AQ14683 1233 aaKnown RBP15.75■□□□□ 0.11
SKA3-201ENST00000298260 DPCR1Q3MIW9 517 aa15.75■□□□□ 0.11
SKA3-201ENST00000298260 TAOK2Q9UL54 1235 aa15.75■□□□□ 0.11
SKA3-201ENST00000298260 EDC3Q96F86 508 aaKnown RBP15.74■□□□□ 0.11
SKA3-201ENST00000298260 SFPQP23246 707 aaKnown RBP eCLIP15.74■□□□□ 0.11
SKA3-201ENST00000298260 NOP2P46087 812 aaKnown RBP15.74■□□□□ 0.11
SKA3-201ENST00000298260 EVCP57679 992 aa15.74■□□□□ 0.11
SKA3-201ENST00000298260 MAP3K19Q56UN5 1328 aa15.73■□□□□ 0.11
SKA3-201ENST00000298260 RIMS1Q86UR5 1692 aaKnown RBP15.73■□□□□ 0.11
SKA3-201ENST00000298260 H3BQF6 201 aa15.73■□□□□ 0.11
SKA3-201ENST00000298260 TPM4P67936 248 aa15.73■□□□□ 0.11
SKA3-201ENST00000298260 SKIDA1Q1XH10 827 aa15.73■□□□□ 0.11
SKA3-201ENST00000298260 TXLNBQ8N3L3 684 aa15.73■□□□□ 0.11
SKA3-201ENST00000298260 NDUFB9Q9Y6M9 179 aa15.73■□□□□ 0.11
SKA3-201ENST00000298260 A0A1B0GVL5 298 aa15.73■□□□□ 0.11
SKA3-201ENST00000298260 HSP90B1P14625 803 aaKnown RBP15.73■□□□□ 0.11
SKA3-201ENST00000298260 LMOD1P29536 600 aaPredicted RBP15.73■□□□□ 0.11
SKA3-201ENST00000298260 ZNF589Q86UQ0 364 aaPredicted RBP15.73■□□□□ 0.11
SKA3-201ENST00000298260 RGS22Q8NE09 1264 aa15.73■□□□□ 0.11
SKA3-201ENST00000298260 USP28Q96RU2 1077 aa15.73■□□□□ 0.11
SKA3-201ENST00000298260 EPB41L2O43491 1005 aaKnown RBP15.72■□□□□ 0.11
SKA3-201ENST00000298260 ATP1A3P13637 1013 aa15.72■□□□□ 0.11
SKA3-201ENST00000298260 HSP90AA4PQ58FG1 418 aa15.72■□□□□ 0.11
SKA3-201ENST00000298260 TM6SF1Q9BZW5 370 aa15.72■□□□□ 0.11
SKA3-201ENST00000298260 CCDC8Q9H0W5 538 aaPredicted RBP15.72■□□□□ 0.11
SKA3-201ENST00000298260 EID1Q9Y6B2 187 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms