RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 GPT2Q8TD30 523 aa28.74■■■□□ 2.19
TRIM54-201ENST00000296098 ZSCAN31Q96LW9 406 aaPredicted RBP28.74■■■□□ 2.19
TRIM54-201ENST00000296098 LARP6Q9BRS8 491 aaKnown RBP28.74■■■□□ 2.19
TRIM54-201ENST00000296098 PSMA5P28066 241 aa28.73■■■□□ 2.19
TRIM54-201ENST00000296098 SH2B1Q9NRF2 756 aaPredicted RBP28.73■■■□□ 2.19
TRIM54-201ENST00000296098 ZNF609O15014 1411 aa28.73■■■□□ 2.19
TRIM54-201ENST00000296098 LARGE1O95461 756 aa28.72■■■□□ 2.19
TRIM54-201ENST00000296098 DNAJC10Q8IXB1 793 aa28.72■■■□□ 2.19
TRIM54-201ENST00000296098 ROBO1Q9Y6N7 1651 aa28.72■■■□□ 2.19
TRIM54-201ENST00000296098 COL22A1Q8NFW1 1626 aaPredicted RBP28.72■■■□□ 2.19
TRIM54-201ENST00000296098 TNKS1BP1Q9C0C2 1729 aaKnown RBP28.72■■■□□ 2.19
TRIM54-201ENST00000296098 ZNF445P59923 1031 aa28.72■■■□□ 2.19
TRIM54-201ENST00000296098 TCIRG1Q13488 830 aa28.72■■■□□ 2.19
TRIM54-201ENST00000296098 ATG3Q9NT62 314 aa28.72■■■□□ 2.19
TRIM54-201ENST00000296098 ZNF330Q9Y3S2 320 aaPredicted RBP28.72■■■□□ 2.19
TRIM54-201ENST00000296098 COL16A1Q07092 1604 aaPredicted RBP28.71■■■□□ 2.19
TRIM54-201ENST00000296098 ZSCAN23Q3MJ62 389 aa28.71■■■□□ 2.19
TRIM54-201ENST00000296098 KIF6Q6ZMV9 814 aa28.71■■■□□ 2.19
TRIM54-201ENST00000296098 HMG20BQ9P0W2 317 aa28.71■■■□□ 2.19
TRIM54-201ENST00000296098 SMC3Q9UQE7 1217 aa28.71■■■□□ 2.19
TRIM54-201ENST00000296098 WNK3Q9BYP7 1800 aa28.71■■■□□ 2.19
TRIM54-201ENST00000296098 EYA2O00167 538 aa28.7■■■□□ 2.19
TRIM54-201ENST00000296098 NDUFB9Q9Y6M9 179 aa28.7■■■□□ 2.19
TRIM54-201ENST00000296098 TAF5LO75529 589 aa28.7■■■□□ 2.18
TRIM54-201ENST00000296098 CIAO1O76071 339 aa28.7■■■□□ 2.18
TRIM54-201ENST00000296098 MBD3O95983 291 aa28.7■■■□□ 2.18
TRIM54-201ENST00000296098 AHDC1Q5TGY3 1603 aaPredicted RBP28.7■■■□□ 2.18
TRIM54-201ENST00000296098 STARD3NLO95772 234 aa28.69■■■□□ 2.18
TRIM54-201ENST00000296098 FAM43AQ8N2R8 423 aa28.69■■■□□ 2.18
TRIM54-201ENST00000296098 NEUROD6Q96NK8 337 aa28.69■■■□□ 2.18
TRIM54-201ENST00000296098 TRIM28Q13263 835 aaKnown RBP28.68■■■□□ 2.18
TRIM54-201ENST00000296098 CCDC83Q8IWF9 413 aa28.68■■■□□ 2.18
TRIM54-201ENST00000296098 PALLDQ8WX93 1383 aa28.68■■■□□ 2.18
TRIM54-201ENST00000296098 BCL9O00512 1426 aa28.67■■■□□ 2.18
TRIM54-201ENST00000296098 DDX46Q7L014 1031 aaKnown RBP28.67■■■□□ 2.18
TRIM54-201ENST00000296098 ZNF594Q96JF6 807 aaPredicted RBP28.67■■■□□ 2.18
TRIM54-201ENST00000296098 LRRC24Q50LG9 513 aa28.67■■■□□ 2.18
TRIM54-201ENST00000296098 USPL1Q5W0Q7 1092 aa28.67■■■□□ 2.18
TRIM54-201ENST00000296098 BLOC1S2Q6QNY1 142 aa28.67■■■□□ 2.18
TRIM54-201ENST00000296098 KBTBD3Q8NAB2 608 aa28.67■■■□□ 2.18
TRIM54-201ENST00000296098 CCDC9Q9Y3X0 531 aaKnown RBP28.66■■■□□ 2.18
TRIM54-201ENST00000296098 STX6O43752 255 aa28.65■■■□□ 2.18
TRIM54-201ENST00000296098 ZSCAN22P10073 491 aaPredicted RBP28.65■■■□□ 2.18
TRIM54-201ENST00000296098 TSGA10IPQ3SY00 556 aa28.65■■■□□ 2.18
TRIM54-201ENST00000296098 SPEF2Q9C093 1822 aa28.65■■■□□ 2.18
TRIM54-201ENST00000296098 PCCAP05165 728 aaPredicted RBP28.65■■■□□ 2.18
TRIM54-201ENST00000296098 SYT1P21579 422 aa28.65■■■□□ 2.18
TRIM54-201ENST00000296098 RBM27Q9P2N5 1060 aaKnown RBP28.65■■■□□ 2.18
TRIM54-201ENST00000296098 SH3TC1Q8TE82 1336 aa28.65■■■□□ 2.18
TRIM54-201ENST00000296098 RPS6KB1P23443 525 aa28.64■■■□□ 2.18
TRIM54-201ENST00000296098 MCMDC2Q4G0Z9 681 aa28.64■■■□□ 2.18
TRIM54-201ENST00000296098 MAP3K15Q6ZN16 1313 aa28.64■■■□□ 2.18
TRIM54-201ENST00000296098 TIMM10P62072 90 aa28.64■■■□□ 2.17
TRIM54-201ENST00000296098 ANKRD1Q15327 319 aa28.64■■■□□ 2.17
TRIM54-201ENST00000296098 ME3Q16798 604 aa28.64■■■□□ 2.17
TRIM54-201ENST00000296098 CCDC57Q2TAC2 916 aa28.64■■■□□ 2.17
TRIM54-201ENST00000296098 PAG1Q9NWQ8 432 aa28.64■■■□□ 2.17
TRIM54-201ENST00000296098 ANKRD36CQ5JPF3 1778 aa28.63■■■□□ 2.17
TRIM54-201ENST00000296098 GJB2P29033 226 aa28.63■■■□□ 2.17
TRIM54-201ENST00000296098 KRT32Q14532 448 aa28.63■■■□□ 2.17
TRIM54-201ENST00000296098 ALDH8A1Q9H2A2 487 aaPredicted RBP28.63■■■□□ 2.17
TRIM54-201ENST00000296098 TPCN1Q9ULQ1 816 aa28.63■■■□□ 2.17
TRIM54-201ENST00000296098 TAF6LQ9Y6J9 622 aa28.63■■■□□ 2.17
TRIM54-201ENST00000296098 U3KPZ7 1027 aaPredicted RBP28.63■■■□□ 2.17
TRIM54-201ENST00000296098 ST3GAL1Q11201 340 aa28.62■■■□□ 2.17
TRIM54-201ENST00000296098 PLA2G12BQ9BX93 195 aa28.62■■■□□ 2.17
TRIM54-201ENST00000296098 NSFL1CQ9UNZ2 370 aaKnown RBP28.62■■■□□ 2.17
TRIM54-201ENST00000296098 A0A1B0GUL7 405 aa28.62■■■□□ 2.17
TRIM54-201ENST00000296098 GOLIM4O00461 696 aa28.62■■■□□ 2.17
TRIM54-201ENST00000296098 TICAM2Q86XR7 235 aa28.62■■■□□ 2.17
TRIM54-201ENST00000296098 PUS3Q9BZE2 481 aaKnown RBP28.62■■■□□ 2.17
TRIM54-201ENST00000296098 TMEM63CQ9P1W3 806 aa28.62■■■□□ 2.17
TRIM54-201ENST00000296098 FBXO3Q9UK99 471 aa28.62■■■□□ 2.17
TRIM54-201ENST00000296098 FOXD4L6Q3SYB3 417 aaPredicted RBP28.61■■■□□ 2.17
TRIM54-201ENST00000296098 FOXD4L3Q6VB84 417 aaPredicted RBP28.61■■■□□ 2.17
TRIM54-201ENST00000296098 CCDC129Q6ZRS4 1044 aa28.61■■■□□ 2.17
TRIM54-201ENST00000296098 ZBTB38Q8NAP3 1195 aaPredicted RBP28.61■■■□□ 2.17
TRIM54-201ENST00000296098 SEC62Q99442 399 aaKnown RBP28.61■■■□□ 2.17
TRIM54-201ENST00000296098 CHGBP05060 677 aa28.6■■■□□ 2.17
TRIM54-201ENST00000296098 NASPP49321 788 aaPredicted RBP28.6■■■□□ 2.17
TRIM54-201ENST00000296098 GIGYF2Q6Y7W6 1299 aaKnown RBP28.6■■■□□ 2.17
TRIM54-201ENST00000296098 CEP126Q9P2H0 1117 aa28.6■■■□□ 2.17
TRIM54-201ENST00000296098 F13A1P00488 732 aa28.6■■■□□ 2.17
TRIM54-201ENST00000296098 COL9A3Q14050 684 aaPredicted RBP28.6■■■□□ 2.17
TRIM54-201ENST00000296098 DOT1LQ8TEK3 1739 aa28.6■■■□□ 2.17
TRIM54-201ENST00000296098 TMEM87AQ8NBN3 555 aa28.59■■■□□ 2.17
TRIM54-201ENST00000296098 FAM89AQ96GI7 184 aa28.59■■■□□ 2.17
TRIM54-201ENST00000296098 EXOC5O00471 708 aa28.59■■■□□ 2.17
TRIM54-201ENST00000296098 CYP19A1P11511 503 aaPredicted RBP28.59■■■□□ 2.17
TRIM54-201ENST00000296098 NECAB1Q8N987 351 aa28.59■■■□□ 2.17
TRIM54-201ENST00000296098 ATP6V1DQ9Y5K8 247 aa28.59■■■□□ 2.17
TRIM54-201ENST00000296098 IFIT1P09914 478 aaKnown RBP28.58■■■□□ 2.17
TRIM54-201ENST00000296098 PPIL4Q8WUA2 492 aaKnown RBP eCLIP28.58■■■□□ 2.17
TRIM54-201ENST00000296098 HELLSQ9NRZ9 838 aa28.58■■■□□ 2.17
TRIM54-201ENST00000296098 CDHR2Q9BYE9 1310 aa28.57■■■□□ 2.16
TRIM54-201ENST00000296098 HSP90AB3PQ58FF7 597 aa28.57■■■□□ 2.16
TRIM54-201ENST00000296098 USP48Q86UV5 1035 aa28.57■■■□□ 2.16
TRIM54-201ENST00000296098 TCEANC2Q96MN5 208 aa28.57■■■□□ 2.16
TRIM54-201ENST00000296098 SLC4A9Q96Q91 983 aa28.57■■■□□ 2.16
TRIM54-201ENST00000296098 GDPD2Q9HCC8 539 aa28.57■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms