RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 NUF2Q9BZD4 464 aa13.38□□□□□ -0.27
SHROOM3-201ENST00000296043 TMEM110-MUSTN1A8MSY1 372 aa13.38□□□□□ -0.27
SHROOM3-201ENST00000296043 CCDC40Q4G0X9 1142 aa13.38□□□□□ -0.27
SHROOM3-201ENST00000296043 SELENOOQ9BVL4 669 aa13.38□□□□□ -0.27
SHROOM3-201ENST00000296043 RBSNQ9H1K0 784 aa13.38□□□□□ -0.27
SHROOM3-201ENST00000296043 FAF1Q9UNN5 650 aaPredicted RBP13.38□□□□□ -0.27
SHROOM3-201ENST00000296043 VAV2P52735 878 aa13.37□□□□□ -0.27
SHROOM3-201ENST00000296043 NUCKS1Q9H1E3 243 aaKnown RBP13.37□□□□□ -0.27
SHROOM3-201ENST00000296043 ALDH3A1P30838 453 aa13.37□□□□□ -0.27
SHROOM3-201ENST00000296043 TMED1Q13445 227 aa13.37□□□□□ -0.27
SHROOM3-201ENST00000296043 RNF10Q8N5U6 811 aaKnown RBP13.37□□□□□ -0.27
SHROOM3-201ENST00000296043 GOLGA6BA6NDN3 693 aa13.37□□□□□ -0.27
SHROOM3-201ENST00000296043 SLC4A2P04920 1241 aa13.37□□□□□ -0.27
SHROOM3-201ENST00000296043 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.37□□□□□ -0.27
SHROOM3-201ENST00000296043 LMOD1P29536 600 aaPredicted RBP13.37□□□□□ -0.27
SHROOM3-201ENST00000296043 E7EVH7 732 aa13.37□□□□□ -0.27
SHROOM3-201ENST00000296043 IFNKQ9P0W0 207 aa13.37□□□□□ -0.27
SHROOM3-201ENST00000296043 RRP15Q9Y3B9 282 aaKnown RBP13.37□□□□□ -0.27
SHROOM3-201ENST00000296043 EPSTI1Q96J88 318 aa13.37□□□□□ -0.27
SHROOM3-201ENST00000296043 NACAP1Q9BZK3 213 aa13.36□□□□□ -0.27
SHROOM3-201ENST00000296043 EXOC6BQ9Y2D4 811 aa13.36□□□□□ -0.27
SHROOM3-201ENST00000296043 MTHFSP49914 203 aa13.36□□□□□ -0.27
SHROOM3-201ENST00000296043 RAB11FIP4Q86YS3 637 aa13.36□□□□□ -0.27
SHROOM3-201ENST00000296043 CCDC77Q9BR77 488 aa13.36□□□□□ -0.27
SHROOM3-201ENST00000296043 N4BP2L2Q92802 583 aaPredicted RBP13.36□□□□□ -0.27
SHROOM3-201ENST00000296043 IRAK4Q9NWZ3 460 aa13.36□□□□□ -0.27
SHROOM3-201ENST00000296043 NKIRAS1Q9NYS0 192 aa13.36□□□□□ -0.27
SHROOM3-201ENST00000296043 ARFGAP2Q8N6H7 521 aa13.36□□□□□ -0.27
SHROOM3-201ENST00000296043 LRRC23Q53EV4 343 aaPredicted RBP13.36□□□□□ -0.27
SHROOM3-201ENST00000296043 PHLDB2Q86SQ0 1253 aa13.36□□□□□ -0.27
SHROOM3-201ENST00000296043 CXorf38Q8TB03 319 aa13.36□□□□□ -0.27
SHROOM3-201ENST00000296043 ARID5AQ03989 594 aa13.35□□□□□ -0.27
SHROOM3-201ENST00000296043 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.35□□□□□ -0.27
SHROOM3-201ENST00000296043 CCDC144CPQ8IYA2 1237 aa13.35□□□□□ -0.27
SHROOM3-201ENST00000296043 RPSAP08865 295 aaKnown RBP13.35□□□□□ -0.27
SHROOM3-201ENST00000296043 RASEFQ8IZ41 740 aa13.35□□□□□ -0.27
SHROOM3-201ENST00000296043 ZSCAN22P10073 491 aaPredicted RBP13.35□□□□□ -0.27
SHROOM3-201ENST00000296043 PRKAR2BP31323 418 aa13.35□□□□□ -0.27
SHROOM3-201ENST00000296043 PLEKHA4Q9H4M7 779 aa13.35□□□□□ -0.27
SHROOM3-201ENST00000296043 SYKP43405 635 aa13.35□□□□□ -0.27
SHROOM3-201ENST00000296043 KIF5AQ12840 1032 aa13.35□□□□□ -0.27
SHROOM3-201ENST00000296043 STAG1Q8WVM7 1258 aa13.35□□□□□ -0.27
SHROOM3-201ENST00000296043 LUC7L3O95232 432 aaKnown RBP13.35□□□□□ -0.27
SHROOM3-201ENST00000296043 HNRNPMP52272 730 aaKnown RBP eCLIP13.35□□□□□ -0.27
SHROOM3-201ENST00000296043 LOC102724159A0A0B4J2E5 919 aa13.35□□□□□ -0.27
SHROOM3-201ENST00000296043 PWP2Q15269 919 aaKnown RBP13.35□□□□□ -0.27
SHROOM3-201ENST00000296043 LRRC45Q96CN5 670 aa13.35□□□□□ -0.27
SHROOM3-201ENST00000296043 PHAXQ9H814 394 aaKnown RBP13.35□□□□□ -0.27
SHROOM3-201ENST00000296043 TUBB4AP04350 444 aa13.35□□□□□ -0.27
SHROOM3-201ENST00000296043 NKTRP30414 1462 aaKnown RBP13.35□□□□□ -0.27
SHROOM3-201ENST00000296043 PSMD6Q15008 389 aa13.34□□□□□ -0.27
SHROOM3-201ENST00000296043 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.34□□□□□ -0.27
SHROOM3-201ENST00000296043 CYLC1P35663 651 aaPredicted RBP13.34□□□□□ -0.27
SHROOM3-201ENST00000296043 CCDC62Q6P9F0 684 aa13.34□□□□□ -0.27
SHROOM3-201ENST00000296043 RAPGEF2Q9Y4G8 1499 aa13.34□□□□□ -0.27
SHROOM3-201ENST00000296043 WDHD1O75717 1129 aaPredicted RBP13.34□□□□□ -0.27
SHROOM3-201ENST00000296043 JPH2Q9BR39 696 aaPredicted RBP13.34□□□□□ -0.27
SHROOM3-201ENST00000296043 CTNNA3Q9UI47 895 aa13.34□□□□□ -0.27
SHROOM3-201ENST00000296043 UTP14CQ5TAP6 766 aaKnown RBP13.34□□□□□ -0.27
SHROOM3-201ENST00000296043 GOLGA5Q8TBA6 731 aa13.34□□□□□ -0.27
SHROOM3-201ENST00000296043 GGNBP2Q9H3C7 697 aa13.34□□□□□ -0.27
SHROOM3-201ENST00000296043 SYTL4Q96C24 671 aaPredicted RBP13.34□□□□□ -0.27
SHROOM3-201ENST00000296043 TRIM47Q96LD4 638 aa13.34□□□□□ -0.27
SHROOM3-201ENST00000296043 EID1Q9Y6B2 187 aa13.34□□□□□ -0.27
SHROOM3-201ENST00000296043 U3KPZ7 1027 aaPredicted RBP13.34□□□□□ -0.27
SHROOM3-201ENST00000296043 SRGAP3O43295 1099 aa13.33□□□□□ -0.27
SHROOM3-201ENST00000296043 POLR3DP05423 398 aaPredicted RBP13.33□□□□□ -0.27
SHROOM3-201ENST00000296043 ODF2LQ9ULJ1 636 aa13.33□□□□□ -0.27
SHROOM3-201ENST00000296043 IFI16Q16666 785 aaKnown RBP13.33□□□□□ -0.28
SHROOM3-201ENST00000296043 RAB3GAP1Q15042 981 aa13.33□□□□□ -0.28
SHROOM3-201ENST00000296043 GDAP1L1Q96MZ0 367 aa13.33□□□□□ -0.28
SHROOM3-201ENST00000296043 SLC8A1P32418 973 aa13.33□□□□□ -0.28
SHROOM3-201ENST00000296043 RRBP1Q9P2E9 1410 aaKnown RBP13.33□□□□□ -0.28
SHROOM3-201ENST00000296043 CFAP157Q5JU67 520 aa13.33□□□□□ -0.28
SHROOM3-201ENST00000296043 ARL1P40616 181 aaPredicted RBP13.33□□□□□ -0.28
SHROOM3-201ENST00000296043 E2F5Q15329 346 aa13.33□□□□□ -0.28
SHROOM3-201ENST00000296043 DDX12PQ92771 950 aa13.33□□□□□ -0.28
SHROOM3-201ENST00000296043 TSHZ3Q63HK5 1081 aa13.33□□□□□ -0.28
SHROOM3-201ENST00000296043 DNAI2Q9GZS0 605 aa13.33□□□□□ -0.28
SHROOM3-201ENST00000296043 CCDC110Q8TBZ0 833 aa13.32□□□□□ -0.28
SHROOM3-201ENST00000296043 SPG7Q9UQ90 795 aa13.32□□□□□ -0.28
SHROOM3-201ENST00000296043 BICDL2A1A5D9 508 aa13.32□□□□□ -0.28
SHROOM3-201ENST00000296043 ZNF76P36508 570 aa13.32□□□□□ -0.28
SHROOM3-201ENST00000296043 TUBB4BP68371 445 aa13.32□□□□□ -0.28
SHROOM3-201ENST00000296043 GSTA5Q7RTV2 222 aa13.32□□□□□ -0.28
SHROOM3-201ENST00000296043 MYO10Q9HD67 2058 aa13.32□□□□□ -0.28
SHROOM3-201ENST00000296043 TCERG1LQ5VWI1 586 aa13.32□□□□□ -0.28
SHROOM3-201ENST00000296043 CLTAP09496 248 aa13.32□□□□□ -0.28
SHROOM3-201ENST00000296043 GJC1P36383 396 aa13.32□□□□□ -0.28
SHROOM3-201ENST00000296043 CARD6Q9BX69 1037 aa13.32□□□□□ -0.28
SHROOM3-201ENST00000296043 LONRF3Q496Y0 759 aa13.32□□□□□ -0.28
SHROOM3-201ENST00000296043 FYB2Q5VWT5 728 aa13.32□□□□□ -0.28
SHROOM3-201ENST00000296043 CCDC82Q8N4S0 544 aa13.32□□□□□ -0.28
SHROOM3-201ENST00000296043 JRKLQ9Y4A0 524 aa13.32□□□□□ -0.28
SHROOM3-201ENST00000296043 STMN1P16949 149 aa13.32□□□□□ -0.28
SHROOM3-201ENST00000296043 RGS22Q8NE09 1264 aa13.32□□□□□ -0.28
SHROOM3-201ENST00000296043 SCAPERQ9BY12 1400 aa13.32□□□□□ -0.28
SHROOM3-201ENST00000296043 USP5P45974 858 aa13.32□□□□□ -0.28
SHROOM3-201ENST00000296043 KIAA1524Q8TCG1 905 aa13.32□□□□□ -0.28
SHROOM3-201ENST00000296043 DNM1Q05193 864 aaKnown RBP13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms