RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 ADORA1P30542 326 aa13.79□□□□□ -0.2
CUX1-202ENST00000292538 LDHAL6AQ6ZMR3 332 aa13.79□□□□□ -0.2
CUX1-202ENST00000292538 CNNM1Q9NRU3 951 aa13.79□□□□□ -0.2
CUX1-202ENST00000292538 ZDHHC9Q9Y397 364 aa13.79□□□□□ -0.2
CUX1-202ENST00000292538 CYP46A1Q9Y6A2 500 aa13.79□□□□□ -0.2
CUX1-202ENST00000292538 SIPA1L3O60292 1781 aaPredicted RBP13.79□□□□□ -0.2
CUX1-202ENST00000292538 HIP1O00291 1037 aa13.78□□□□□ -0.2
CUX1-202ENST00000292538 IFIT1P09914 478 aaKnown RBP13.78□□□□□ -0.2
CUX1-202ENST00000292538 HCLS1P14317 486 aaPredicted RBP13.78□□□□□ -0.2
CUX1-202ENST00000292538 IL15P40933 162 aaPredicted RBP13.78□□□□□ -0.2
CUX1-202ENST00000292538 RUFY3Q7L099 469 aa13.78□□□□□ -0.2
CUX1-202ENST00000292538 GREM2Q9H772 168 aa13.78□□□□□ -0.2
CUX1-202ENST00000292538 NAP1L2Q9ULW6 460 aaPredicted RBP13.78□□□□□ -0.2
CUX1-202ENST00000292538 MAP3K15Q6ZN16 1313 aa13.78□□□□□ -0.2
CUX1-202ENST00000292538 LARGE1O95461 756 aa13.78□□□□□ -0.2
CUX1-202ENST00000292538 METTL24Q5JXM2 366 aa13.78□□□□□ -0.2
CUX1-202ENST00000292538 MARCH10Q8NA82 808 aaPredicted RBP13.78□□□□□ -0.2
CUX1-202ENST00000292538 ISCA1Q9BUE6 129 aa13.78□□□□□ -0.2
CUX1-202ENST00000292538 IRS4O14654 1257 aaPredicted RBP13.77□□□□□ -0.2
CUX1-202ENST00000292538 ITGA6P23229 1130 aa13.77□□□□□ -0.2
CUX1-202ENST00000292538 PI16Q6UXB8 463 aa13.77□□□□□ -0.2
CUX1-202ENST00000292538 GIGYF2Q6Y7W6 1299 aaKnown RBP13.77□□□□□ -0.2
CUX1-202ENST00000292538 LRRC2Q9BYS8 371 aa13.77□□□□□ -0.2
CUX1-202ENST00000292538 SLC27A2O14975 620 aa13.77□□□□□ -0.21
CUX1-202ENST00000292538 FGD1P98174 961 aa13.77□□□□□ -0.21
CUX1-202ENST00000292538 TTC39AQ5SRH9 613 aa13.77□□□□□ -0.21
CUX1-202ENST00000292538 CAVIN1Q6NZI2 390 aaKnown RBP13.77□□□□□ -0.21
CUX1-202ENST00000292538 NLRP10Q86W26 655 aa13.77□□□□□ -0.21
CUX1-202ENST00000292538 ZBTB38Q8NAP3 1195 aaPredicted RBP13.77□□□□□ -0.21
CUX1-202ENST00000292538 TAOK2Q9UL54 1235 aa13.77□□□□□ -0.21
CUX1-202ENST00000292538 AK9Q5TCS8 1911 aa13.77□□□□□ -0.21
CUX1-202ENST00000292538 TOM1O60784 492 aa13.77□□□□□ -0.21
CUX1-202ENST00000292538 PPFIA3O75145 1194 aa13.77□□□□□ -0.21
CUX1-202ENST00000292538 BICDL1Q6ZP65 573 aa13.77□□□□□ -0.21
CUX1-202ENST00000292538 PAG1Q9NWQ8 432 aa13.77□□□□□ -0.21
CUX1-202ENST00000292538 LIMCH1Q9UPQ0 1083 aa13.77□□□□□ -0.21
CUX1-202ENST00000292538 SNAP23O00161 211 aa13.76□□□□□ -0.21
CUX1-202ENST00000292538 WASHC4Q2M389 1173 aa13.76□□□□□ -0.21
CUX1-202ENST00000292538 KCPQ6ZWJ8 1503 aa13.76□□□□□ -0.21
CUX1-202ENST00000292538 NECTIN1Q15223 517 aa13.76□□□□□ -0.21
CUX1-202ENST00000292538 VSIG10Q8N0Z9 540 aa13.76□□□□□ -0.21
CUX1-202ENST00000292538 MAP4K1Q92918 833 aa13.76□□□□□ -0.21
CUX1-202ENST00000292538 PANK2Q9BZ23 570 aa13.76□□□□□ -0.21
CUX1-202ENST00000292538 SMC3Q9UQE7 1217 aa13.76□□□□□ -0.21
CUX1-202ENST00000292538 SPATA31A1Q5TZJ5 1347 aa13.75□□□□□ -0.21
CUX1-202ENST00000292538 ADAMTS7Q9UKP4 1686 aa13.75□□□□□ -0.21
CUX1-202ENST00000292538 CCDC158Q5M9N0 1113 aa13.75□□□□□ -0.21
CUX1-202ENST00000292538 RNF20Q5VTR2 975 aa13.75□□□□□ -0.21
CUX1-202ENST00000292538 HAUS7Q99871 368 aa13.75□□□□□ -0.21
CUX1-202ENST00000292538 PCCAP05165 728 aaPredicted RBP13.75□□□□□ -0.21
CUX1-202ENST00000292538 CRKLP46109 303 aaKnown RBP13.75□□□□□ -0.21
CUX1-202ENST00000292538 VPS53Q5VIR6 699 aa13.75□□□□□ -0.21
CUX1-202ENST00000292538 XAGE2Q96GT9 111 aa13.75□□□□□ -0.21
CUX1-202ENST00000292538 RBM27Q9P2N5 1060 aaKnown RBP13.75□□□□□ -0.21
CUX1-202ENST00000292538 CRYBG1Q9Y4K1 1723 aa13.74□□□□□ -0.21
CUX1-202ENST00000292538 LOC102724428A0A0B4J2F2 783 aa13.74□□□□□ -0.21
CUX1-202ENST00000292538 SIK1P57059 783 aa13.74□□□□□ -0.21
CUX1-202ENST00000292538 BLOC1S2Q6QNY1 142 aa13.74□□□□□ -0.21
CUX1-202ENST00000292538 PKD1L3Q7Z443 1732 aa13.74□□□□□ -0.21
CUX1-202ENST00000292538 TAF5LO75529 589 aa13.74□□□□□ -0.21
CUX1-202ENST00000292538 HSP90B1P14625 803 aaKnown RBP13.74□□□□□ -0.21
CUX1-202ENST00000292538 MCMDC2Q4G0Z9 681 aa13.74□□□□□ -0.21
CUX1-202ENST00000292538 TTC14Q96N46 770 aa13.74□□□□□ -0.21
CUX1-202ENST00000292538 BCL9O00512 1426 aa13.73□□□□□ -0.21
CUX1-202ENST00000292538 ABCC6O95255 1503 aa13.73□□□□□ -0.21
CUX1-202ENST00000292538 ANKRD18BA2A2Z9 1011 aa13.73□□□□□ -0.21
CUX1-202ENST00000292538 VPS37CA5D8V6 355 aaPredicted RBP13.73□□□□□ -0.21
CUX1-202ENST00000292538 SCARF1Q14162 830 aa13.73□□□□□ -0.21
CUX1-202ENST00000292538 CHST3Q7LGC8 479 aa13.73□□□□□ -0.21
CUX1-202ENST00000292538 PTF1AQ7RTS3 328 aa13.73□□□□□ -0.21
CUX1-202ENST00000292538 TTLL11Q8NHH1 800 aa13.73□□□□□ -0.21
CUX1-202ENST00000292538 FOSBP53539 338 aa13.73□□□□□ -0.21
CUX1-202ENST00000292538 CUL4AQ13619 759 aa13.73□□□□□ -0.21
CUX1-202ENST00000292538 KBTBD3Q8NAB2 608 aa13.73□□□□□ -0.21
CUX1-202ENST00000292538 A0A0G2JLW4 131 aa13.72□□□□□ -0.21
CUX1-202ENST00000292538 CTSWP56202 376 aa13.72□□□□□ -0.21
CUX1-202ENST00000292538 ITPK1Q13572 414 aa13.72□□□□□ -0.21
CUX1-202ENST00000292538 ME3Q16798 604 aa13.72□□□□□ -0.21
CUX1-202ENST00000292538 SKOR2Q2VWA4 1001 aaPredicted RBP13.72□□□□□ -0.21
CUX1-202ENST00000292538 TPCN1Q9ULQ1 816 aa13.72□□□□□ -0.21
CUX1-202ENST00000292538 NIP7Q9Y221 180 aaKnown RBP eCLIP13.72□□□□□ -0.212e-10■■■■■ 60.1
CUX1-202ENST00000292538 PARP4Q9UKK3 1724 aaKnown RBP13.72□□□□□ -0.21
CUX1-202ENST00000292538 CYP2E1P05181 493 aaPredicted RBP13.72□□□□□ -0.21
CUX1-202ENST00000292538 XRCC6P12956 609 aaKnown RBP eCLIP13.72□□□□□ -0.21
CUX1-202ENST00000292538 PSMA5P28066 241 aa13.72□□□□□ -0.21
CUX1-202ENST00000292538 GJB2P29033 226 aa13.72□□□□□ -0.21
CUX1-202ENST00000292538 ZAP70P43403 619 aa13.72□□□□□ -0.21
CUX1-202ENST00000292538 ATP2B3Q16720 1220 aa13.72□□□□□ -0.21
CUX1-202ENST00000292538 GAS2L3Q86XJ1 694 aa13.72□□□□□ -0.21
CUX1-202ENST00000292538 CCDC24Q8N4L8 307 aa13.72□□□□□ -0.21
CUX1-202ENST00000292538 ZSWIM6Q9HCJ5 1215 aa13.72□□□□□ -0.21
CUX1-202ENST00000292538 CCDC87Q9NVE4 849 aa13.72□□□□□ -0.21
CUX1-202ENST00000292538 TNS2Q63HR2 1409 aa13.72□□□□□ -0.21
CUX1-202ENST00000292538 ROBO1Q9Y6N7 1651 aa13.72□□□□□ -0.21
CUX1-202ENST00000292538 UBN2Q6ZU65 1347 aa13.72□□□□□ -0.21
CUX1-202ENST00000292538 HAND2P61296 217 aa13.71□□□□□ -0.21
CUX1-202ENST00000292538 L1TD1Q5T7N2 865 aaKnown RBP13.71□□□□□ -0.21
CUX1-202ENST00000292538 SUSD4Q5VX71 490 aa13.71□□□□□ -0.21
CUX1-202ENST00000292538 SEC31BQ9NQW1 1179 aa13.71□□□□□ -0.21
CUX1-202ENST00000292538 LMBRD1Q9NUN5 540 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms