RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 HSP90AB4PQ58FF6 505 aa11.98□□□□□ -0.49
LIG3-201ENST00000262327 TOM1L2Q6ZVM7 507 aa11.98□□□□□ -0.49
LIG3-201ENST00000262327 TMEM87AQ8NBN3 555 aa11.98□□□□□ -0.49
LIG3-201ENST00000262327 KDM4AO75164 1064 aa11.97□□□□□ -0.49
LIG3-201ENST00000262327 LIG1P18858 919 aa11.97□□□□□ -0.49
LIG3-201ENST00000262327 TTC6Q86TZ1 520 aa11.97□□□□□ -0.49
LIG3-201ENST00000262327 FSD1Q9BTV5 496 aa11.97□□□□□ -0.49
LIG3-201ENST00000262327 ZSWIM6Q9HCJ5 1215 aa11.97□□□□□ -0.49
LIG3-201ENST00000262327 DBF4Q9UBU7 674 aaPredicted RBP11.97□□□□□ -0.49
LIG3-201ENST00000262327 MEGF6O75095 1541 aa11.97□□□□□ -0.49
LIG3-201ENST00000262327 CCDC171Q6TFL3 1326 aa11.97□□□□□ -0.49
LIG3-201ENST00000262327 ZKSCAN1P17029 563 aaPredicted RBP11.97□□□□□ -0.49
LIG3-201ENST00000262327 NECTIN1Q15223 517 aa11.97□□□□□ -0.49
LIG3-201ENST00000262327 KAZALD1Q96I82 304 aa11.97□□□□□ -0.49
LIG3-201ENST00000262327 PKD1L3Q7Z443 1732 aa11.97□□□□□ -0.49
LIG3-201ENST00000262327 G3BP1Q13283 466 aaKnown RBP eCLIP11.97□□□□□ -0.492e-8■■■□□ 16.8
LIG3-201ENST00000262327 VPS53Q5VIR6 699 aa11.97□□□□□ -0.49
LIG3-201ENST00000262327 ZNF589Q86UQ0 364 aaPredicted RBP11.97□□□□□ -0.49
LIG3-201ENST00000262327 DDX11Q96FC9 970 aa11.97□□□□□ -0.49
LIG3-201ENST00000262327 TTC41PQ6P2S7 1318 aa11.97□□□□□ -0.49
LIG3-201ENST00000262327 ADAMTS7Q9UKP4 1686 aa11.97□□□□□ -0.49
LIG3-201ENST00000262327 FAM184AQ8NB25 1140 aa11.96□□□□□ -0.49
LIG3-201ENST00000262327 PYCARDQ9ULZ3 195 aa11.96□□□□□ -0.49
LIG3-201ENST00000262327 ATP6V1DQ9Y5K8 247 aa11.96□□□□□ -0.49
LIG3-201ENST00000262327 PARP4Q9UKK3 1724 aaKnown RBP11.96□□□□□ -0.49
LIG3-201ENST00000262327 SLC27A2O14975 620 aa11.96□□□□□ -0.5
LIG3-201ENST00000262327 RNMTO43148 476 aaKnown RBP11.96□□□□□ -0.5
LIG3-201ENST00000262327 GIGYF1O75420 1035 aaPredicted RBP11.96□□□□□ -0.5
LIG3-201ENST00000262327 TERF1P54274 439 aa11.96□□□□□ -0.5
LIG3-201ENST00000262327 KSR2Q6VAB6 950 aa11.96□□□□□ -0.5
LIG3-201ENST00000262327 LUZP1Q86V48 1076 aa11.96□□□□□ -0.5
LIG3-201ENST00000262327 EVI5LQ96CN4 794 aa11.96□□□□□ -0.5
LIG3-201ENST00000262327 GPATCH3Q96I76 525 aa11.96□□□□□ -0.5
LIG3-201ENST00000262327 LRRC2Q9BYS8 371 aa11.96□□□□□ -0.5
LIG3-201ENST00000262327 IPO4Q8TEX9 1081 aaKnown RBP11.95□□□□□ -0.5
LIG3-201ENST00000262327 PIBF1Q8WXW3 757 aa11.95□□□□□ -0.5
LIG3-201ENST00000262327 BTG4Q9NY30 223 aa11.95□□□□□ -0.5
LIG3-201ENST00000262327 PXDNLA1KZ92 1463 aa11.95□□□□□ -0.5
LIG3-201ENST00000262327 CEBPZQ03701 1054 aaKnown RBP11.95□□□□□ -0.5
LIG3-201ENST00000262327 UVSSAQ2YD98 709 aa11.95□□□□□ -0.5
LIG3-201ENST00000262327 LARP1Q6PKG0 1096 aaKnown RBP11.95□□□□□ -0.5
LIG3-201ENST00000262327 CCDC129Q6ZRS4 1044 aa11.95□□□□□ -0.5
LIG3-201ENST00000262327 IFNL2Q8IZJ0 200 aa11.95□□□□□ -0.5
LIG3-201ENST00000262327 FUCA2Q9BTY2 467 aa11.95□□□□□ -0.5
LIG3-201ENST00000262327 JCADQ9P266 1359 aa11.95□□□□□ -0.5
LIG3-201ENST00000262327 GRM8O00222 908 aa11.95□□□□□ -0.5
LIG3-201ENST00000262327 JAK2O60674 1132 aa11.95□□□□□ -0.5
LIG3-201ENST00000262327 SLFNL1Q499Z3 407 aa11.95□□□□□ -0.5
LIG3-201ENST00000262327 EPHA10Q5JZY3 1008 aa11.95□□□□□ -0.5
LIG3-201ENST00000262327 RIC3Q7Z5B4 369 aa11.95□□□□□ -0.5
LIG3-201ENST00000262327 KCNF1Q9H3M0 494 aa11.95□□□□□ -0.5
LIG3-201ENST00000262327 DYNC1I1O14576 645 aa11.94□□□□□ -0.5
LIG3-201ENST00000262327 PHKG2P15735 406 aa11.94□□□□□ -0.5
LIG3-201ENST00000262327 SEC62Q99442 399 aaKnown RBP11.94□□□□□ -0.5
LIG3-201ENST00000262327 STRN4Q9NRL3 753 aa11.94□□□□□ -0.5
LIG3-201ENST00000262327 IL2RBP14784 551 aa11.94□□□□□ -0.5
LIG3-201ENST00000262327 BLOC1S2Q6QNY1 142 aa11.94□□□□□ -0.5
LIG3-201ENST00000262327 DACT1Q9NYF0 836 aa11.94□□□□□ -0.5
LIG3-201ENST00000262327 EPB41L2O43491 1005 aaKnown RBP11.93□□□□□ -0.5
LIG3-201ENST00000262327 MAP4K1Q92918 833 aa11.93□□□□□ -0.5
LIG3-201ENST00000262327 MAP7D2Q96T17 732 aa11.93□□□□□ -0.5
LIG3-201ENST00000262327 SH2B1Q9NRF2 756 aaPredicted RBP11.93□□□□□ -0.5
LIG3-201ENST00000262327 USP42Q9H9J4 1324 aaKnown RBP11.93□□□□□ -0.5
LIG3-201ENST00000262327 GOLGA6L4A6NEF3 574 aa11.93□□□□□ -0.5
LIG3-201ENST00000262327 LETM1O95202 739 aaPredicted RBP11.93□□□□□ -0.5
LIG3-201ENST00000262327 ZSCAN31Q96LW9 406 aaPredicted RBP11.93□□□□□ -0.5
LIG3-201ENST00000262327 A0A087WWV3 80 aa11.92□□□□□ -0.5
LIG3-201ENST00000262327 IGKV5-2P06315 115 aa11.92□□□□□ -0.5
LIG3-201ENST00000262327 PTGS1P23219 599 aa11.92□□□□□ -0.5
LIG3-201ENST00000262327 KRT85P78386 507 aa11.92□□□□□ -0.5
LIG3-201ENST00000262327 MTX1Q13505 466 aa11.92□□□□□ -0.5
LIG3-201ENST00000262327 ZCRB1Q8TBF4 217 aaKnown RBP11.92□□□□□ -0.5
LIG3-201ENST00000262327 DNAJC2Q99543 621 aaKnown RBP11.92□□□□□ -0.5
LIG3-201ENST00000262327 PCDH11XQ9BZA7 1347 aa11.92□□□□□ -0.5
LIG3-201ENST00000262327 PCDH11YQ9BZA8 1340 aa11.92□□□□□ -0.5
LIG3-201ENST00000262327 CCDC192P0DO97 292 aa11.92□□□□□ -0.5
LIG3-201ENST00000262327 MYRIPQ8NFW9 859 aa11.92□□□□□ -0.5
LIG3-201ENST00000262327 DCAF5Q96JK2 942 aa11.92□□□□□ -0.5
LIG3-201ENST00000262327 MYD88Q99836 296 aa11.92□□□□□ -0.5
LIG3-201ENST00000262327 CHMP4AQ9BY43 222 aa11.92□□□□□ -0.5
LIG3-201ENST00000262327 NUP62CLQ9H1M0 184 aa11.92□□□□□ -0.5
LIG3-201ENST00000262327 NRBP1Q9UHY1 535 aa11.92□□□□□ -0.5
LIG3-201ENST00000262327 LRMPQ12912 555 aa11.92□□□□□ -0.5
LIG3-201ENST00000262327 TOB2Q14106 344 aaPredicted RBP11.92□□□□□ -0.5
LIG3-201ENST00000262327 ERC1Q8IUD2 1116 aa11.92□□□□□ -0.5
LIG3-201ENST00000262327 DRC7Q8IY82 874 aa11.92□□□□□ -0.5
LIG3-201ENST00000262327 KLHL34Q8N239 644 aa11.92□□□□□ -0.5
LIG3-201ENST00000262327 PLCH1Q4KWH8 1693 aa11.91□□□□□ -0.5
LIG3-201ENST00000262327 ALDH1L1O75891 902 aa11.91□□□□□ -0.5
LIG3-201ENST00000262327 HOXB7P09629 217 aa11.91□□□□□ -0.5
LIG3-201ENST00000262327 HSP90B1P14625 803 aaKnown RBP11.91□□□□□ -0.5
LIG3-201ENST00000262327 TYRO3Q06418 890 aa11.91□□□□□ -0.5
LIG3-201ENST00000262327 ANO6Q4KMQ2 910 aa11.91□□□□□ -0.5
LIG3-201ENST00000262327 ZNF710Q8N1W2 664 aa11.91□□□□□ -0.5
LIG3-201ENST00000262327 SPATA32Q96LK8 384 aa11.91□□□□□ -0.5
LIG3-201ENST00000262327 TM6SF1Q9BZW5 370 aa11.91□□□□□ -0.5
LIG3-201ENST00000262327 KDM3BQ7LBC6 1761 aa11.91□□□□□ -0.5
LIG3-201ENST00000262327 SPATA31A6Q5VVP1 1343 aa11.91□□□□□ -0.5
LIG3-201ENST00000262327 ATP5J2-PTCD1G3V325 749 aa11.91□□□□□ -0.5
LIG3-201ENST00000262327 CYP27B1O15528 508 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms