RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 CGNQ9P2M7 1197 aaKnown RBP14.12□□□□□ -0.15
USHBP1-201ENST00000252597 BEND3Q5T5X7 828 aa14.12□□□□□ -0.15
USHBP1-201ENST00000252597 Q6ZUG5 572 aa14.12□□□□□ -0.15
USHBP1-201ENST00000252597 SUCLG2Q96I99 432 aa14.12□□□□□ -0.15
USHBP1-201ENST00000252597 MYD88Q99836 296 aa14.12□□□□□ -0.15
USHBP1-201ENST00000252597 TCHHQ07283 1943 aa14.12□□□□□ -0.15
USHBP1-201ENST00000252597 CCDC73Q6ZRK6 1079 aa14.12□□□□□ -0.15
USHBP1-201ENST00000252597 PRDM4Q9UKN5 801 aa14.12□□□□□ -0.15
USHBP1-201ENST00000252597 CEP170BQ9Y4F5 1589 aaPredicted RBP14.11□□□□□ -0.15
USHBP1-201ENST00000252597 POLR3DP05423 398 aaPredicted RBP14.11□□□□□ -0.15
USHBP1-201ENST00000252597 HSP90AB3PQ58FF7 597 aa14.11□□□□□ -0.15
USHBP1-201ENST00000252597 SMAP1Q8IYB5 467 aaPredicted RBP14.11□□□□□ -0.15
USHBP1-201ENST00000252597 LEO1Q8WVC0 666 aaPredicted RBP14.11□□□□□ -0.15
USHBP1-201ENST00000252597 USP6P35125 1406 aa14.11□□□□□ -0.15
USHBP1-201ENST00000252597 ZC3H6P61129 1189 aaKnown RBP14.11□□□□□ -0.15
USHBP1-201ENST00000252597 HAND2P61296 217 aa14.11□□□□□ -0.15
USHBP1-201ENST00000252597 CACTINQ8WUQ7 758 aaKnown RBP14.11□□□□□ -0.15
USHBP1-201ENST00000252597 KINO60870 393 aaKnown RBP14.1□□□□□ -0.15
USHBP1-201ENST00000252597 HOMER1Q86YM7 354 aa14.1□□□□□ -0.15
USHBP1-201ENST00000252597 ITSN1Q15811 1721 aa14.1□□□□□ -0.15
USHBP1-201ENST00000252597 CSB-PGBD3P0DP91 1061 aa14.1□□□□□ -0.15
USHBP1-201ENST00000252597 EIF4A1P60842 406 aaKnown RBP14.1□□□□□ -0.15
USHBP1-201ENST00000252597 NEXNQ0ZGT2 675 aa14.1□□□□□ -0.15
USHBP1-201ENST00000252597 ST3GAL1Q11201 340 aa14.1□□□□□ -0.15
USHBP1-201ENST00000252597 SCAND2PQ9GZW5 306 aaPredicted RBP14.1□□□□□ -0.15
USHBP1-201ENST00000252597 MAP3K5Q99683 1374 aa14.1□□□□□ -0.15
USHBP1-201ENST00000252597 CCAR1Q8IX12 1150 aaKnown RBP14.1□□□□□ -0.15
USHBP1-201ENST00000252597 ZSWIM6Q9HCJ5 1215 aa14.1□□□□□ -0.15
USHBP1-201ENST00000252597 SNRKQ9NRH2 765 aa14.1□□□□□ -0.15
USHBP1-201ENST00000252597 DBF4Q9UBU7 674 aaPredicted RBP14.1□□□□□ -0.15
USHBP1-201ENST00000252597 SKILP12757 684 aa14.09□□□□□ -0.15
USHBP1-201ENST00000252597 APOBRQ0VD83 1088 aa14.09□□□□□ -0.15
USHBP1-201ENST00000252597 CCDC144BQ3MJ40 725 aa14.09□□□□□ -0.15
USHBP1-201ENST00000252597 CCDC144CPQ8IYA2 1237 aa14.09□□□□□ -0.15
USHBP1-201ENST00000252597 ZSCAN25Q6NSZ9 544 aa14.09□□□□□ -0.15
USHBP1-201ENST00000252597 UBE3BQ7Z3V4 1068 aa14.09□□□□□ -0.15
USHBP1-201ENST00000252597 CCAR2Q8N163 923 aaKnown RBP14.09□□□□□ -0.15
USHBP1-201ENST00000252597 USP27XA6NNY8 438 aa14.08□□□□□ -0.15
USHBP1-201ENST00000252597 ZNF75DP51815 510 aa14.08□□□□□ -0.16
USHBP1-201ENST00000252597 CEP135Q66GS9 1140 aa14.08□□□□□ -0.16
USHBP1-201ENST00000252597 NEK1Q96PY6 1258 aa14.08□□□□□ -0.16
USHBP1-201ENST00000252597 NLRP2Q9NX02 1062 aa14.08□□□□□ -0.16
USHBP1-201ENST00000252597 MON2Q7Z3U7 1717 aa14.08□□□□□ -0.16
USHBP1-201ENST00000252597 GRM8O00222 908 aa14.08□□□□□ -0.16
USHBP1-201ENST00000252597 PTPN14Q15678 1187 aa14.08□□□□□ -0.16
USHBP1-201ENST00000252597 AOPEPQ8N6M6 819 aa14.08□□□□□ -0.16
USHBP1-201ENST00000252597 KDM4FA0A1W2PPD8 638 aa14.07□□□□□ -0.16
USHBP1-201ENST00000252597 GOLIM4O00461 696 aa14.07□□□□□ -0.16
USHBP1-201ENST00000252597 SASH1O94885 1247 aa14.07□□□□□ -0.16
USHBP1-201ENST00000252597 ZSCAN20P17040 1043 aaPredicted RBP14.07□□□□□ -0.16
USHBP1-201ENST00000252597 C11orf57Q6ZUT1 292 aaPredicted RBP14.07□□□□□ -0.16
USHBP1-201ENST00000252597 FSIP1Q8NA03 581 aa14.07□□□□□ -0.16
USHBP1-201ENST00000252597 PGBD1Q96JS3 809 aa14.07□□□□□ -0.16
USHBP1-201ENST00000252597 DIP2AQ14689 1571 aa14.07□□□□□ -0.16
USHBP1-201ENST00000252597 IGSF1Q8N6C5 1336 aa14.07□□□□□ -0.16
USHBP1-201ENST00000252597 A0A1B0GVL5 298 aa14.07□□□□□ -0.16
USHBP1-201ENST00000252597 HTATSF1O43719 755 aaKnown RBP14.07□□□□□ -0.16
USHBP1-201ENST00000252597 DDX58O95786 925 aaKnown RBP14.07□□□□□ -0.16
USHBP1-201ENST00000252597 NECTIN1Q15223 517 aa14.07□□□□□ -0.16
USHBP1-201ENST00000252597 ERC1Q8IUD2 1116 aa14.07□□□□□ -0.16
USHBP1-201ENST00000252597 RGPD8O14715 1765 aaPredicted RBP14.06□□□□□ -0.16
USHBP1-201ENST00000252597 RPS6KB1P23443 525 aa14.06□□□□□ -0.16
USHBP1-201ENST00000252597 FKBP4Q02790 459 aaKnown RBP eCLIP14.06□□□□□ -0.16
USHBP1-201ENST00000252597 GNL2Q13823 731 aaKnown RBP14.06□□□□□ -0.16
USHBP1-201ENST00000252597 POLA2Q14181 598 aa14.06□□□□□ -0.16
USHBP1-201ENST00000252597 WASHC4Q2M389 1173 aa14.06□□□□□ -0.16
USHBP1-201ENST00000252597 COPS6Q7L5N1 327 aa14.06□□□□□ -0.16
USHBP1-201ENST00000252597 DDX17Q92841 729 aaKnown RBP14.06□□□□□ -0.16
USHBP1-201ENST00000252597 AKAP12Q02952 1782 aa14.06□□□□□ -0.16
USHBP1-201ENST00000252597 SBNO1A3KN83 1393 aa14.06□□□□□ -0.16
USHBP1-201ENST00000252597 TPM3P06753 285 aa14.06□□□□□ -0.16
USHBP1-201ENST00000252597 ATP2B1P20020 1258 aa14.06□□□□□ -0.16
USHBP1-201ENST00000252597 TFCP2Q12800 502 aa14.06□□□□□ -0.16
USHBP1-201ENST00000252597 DBNDD2Q9BQY9 259 aa14.06□□□□□ -0.16
USHBP1-201ENST00000252597 GJB4Q9NTQ9 266 aa14.06□□□□□ -0.16
USHBP1-201ENST00000252597 DDX19AQ9NUU7 478 aaKnown RBP14.06□□□□□ -0.16
USHBP1-201ENST00000252597 NPHP3Q7Z494 1330 aa14.05□□□□□ -0.16
USHBP1-201ENST00000252597 CCDC69A6NI79 296 aa14.05□□□□□ -0.16
USHBP1-201ENST00000252597 PLEKHO1Q53GL0 409 aaPredicted RBP14.05□□□□□ -0.16
USHBP1-201ENST00000252597 XAGE3Q8WTP9 111 aa14.05□□□□□ -0.16
USHBP1-201ENST00000252597 TIMM10P62072 90 aa14.05□□□□□ -0.16
USHBP1-201ENST00000252597 CREBRFQ8IUR6 639 aa14.05□□□□□ -0.16
USHBP1-201ENST00000252597 TMEM87AQ8NBN3 555 aa14.05□□□□□ -0.16
USHBP1-201ENST00000252597 ZNF215Q9UL58 517 aaPredicted RBP14.05□□□□□ -0.16
USHBP1-201ENST00000252597 TTC41PQ6P2S7 1318 aa14.05□□□□□ -0.16
USHBP1-201ENST00000252597 NCBP1Q09161 790 aaKnown RBP14.05□□□□□ -0.16
USHBP1-201ENST00000252597 ANKRD1Q15327 319 aa14.05□□□□□ -0.16
USHBP1-201ENST00000252597 ELF2Q15723 593 aa14.05□□□□□ -0.16
USHBP1-201ENST00000252597 KSR2Q6VAB6 950 aa14.05□□□□□ -0.16
USHBP1-201ENST00000252597 FUCA2Q9BTY2 467 aa14.05□□□□□ -0.16
USHBP1-201ENST00000252597 SSH2Q76I76 1423 aa14.04□□□□□ -0.16
USHBP1-201ENST00000252597 A0A0G2JLW4 131 aa14.04□□□□□ -0.16
USHBP1-201ENST00000252597 GPHNQ9NQX3 736 aaPredicted RBP14.04□□□□□ -0.16
USHBP1-201ENST00000252597 DMTNQ08495 405 aa14.04□□□□□ -0.16
USHBP1-201ENST00000252597 STK38Q15208 465 aa14.04□□□□□ -0.16
USHBP1-201ENST00000252597 TMC6Q7Z403 805 aa14.04□□□□□ -0.16
USHBP1-201ENST00000252597 OVOS2A0A0J9YW53 1432 aa14.04□□□□□ -0.16
USHBP1-201ENST00000252597 OVOS2Q6IE36 1432 aa14.04□□□□□ -0.16
USHBP1-201ENST00000252597 TOB2Q14106 344 aaPredicted RBP14.03□□□□□ -0.16
USHBP1-201ENST00000252597 EPHA10Q5JZY3 1008 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms