RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 DNTTIP2Q5QJE6 756 aaKnown RBP22.24■■□□□ 1.15
CPSF3-201ENST00000238112 ZNF830Q96NB3 372 aaPredicted RBP22.24■■□□□ 1.15
CPSF3-201ENST00000238112 FPGT-TNNI3KV9GXZ4 949 aa22.24■■□□□ 1.15
CPSF3-201ENST00000238112 C5P01031 1676 aa22.24■■□□□ 1.15
CPSF3-201ENST00000238112 PIBF1Q8WXW3 757 aa22.23■■□□□ 1.15
CPSF3-201ENST00000238112 DBNLQ9UJU6 430 aaKnown RBP22.23■■□□□ 1.15
CPSF3-201ENST00000238112 SNRPA1P09661 255 aaKnown RBP22.23■■□□□ 1.15
CPSF3-201ENST00000238112 STK3Q13188 491 aa22.23■■□□□ 1.15
CPSF3-201ENST00000238112 RBM10P98175 930 aaKnown RBP22.22■■□□□ 1.15
CPSF3-201ENST00000238112 TFCP2Q12800 502 aa22.22■■□□□ 1.15
CPSF3-201ENST00000238112 IFNL2Q8IZJ0 200 aa22.22■■□□□ 1.15
CPSF3-201ENST00000238112 SCAND2PQ9GZW5 306 aaPredicted RBP22.22■■□□□ 1.15
CPSF3-201ENST00000238112 GOLGA6L4A6NEF3 574 aa22.22■■□□□ 1.15
CPSF3-201ENST00000238112 PTPN12Q05209 780 aaKnown RBP22.22■■□□□ 1.15
CPSF3-201ENST00000238112 FAM173BQ6P4H8 233 aa22.22■■□□□ 1.15
CPSF3-201ENST00000238112 JARID2Q92833 1246 aaPredicted RBP22.22■■□□□ 1.15
CPSF3-201ENST00000238112 NUP62CLQ9H1M0 184 aa22.22■■□□□ 1.15
CPSF3-201ENST00000238112 TTC12Q9H892 705 aaPredicted RBP22.22■■□□□ 1.15
CPSF3-201ENST00000238112 CHMP3Q9Y3E7 222 aa22.22■■□□□ 1.15
CPSF3-201ENST00000238112 RGPD5Q99666 1765 aa22.21■■□□□ 1.15
CPSF3-201ENST00000238112 RFX5P48382 616 aaPredicted RBP22.21■■□□□ 1.15
CPSF3-201ENST00000238112 USPL1Q5W0Q7 1092 aa22.21■■□□□ 1.15
CPSF3-201ENST00000238112 UBE3BQ7Z3V4 1068 aa22.21■■□□□ 1.15
CPSF3-201ENST00000238112 FAM13BQ9NYF5 915 aa22.21■■□□□ 1.15
CPSF3-201ENST00000238112 USP16Q9Y5T5 823 aa22.21■■□□□ 1.15
CPSF3-201ENST00000238112 DYNC1I1O14576 645 aa22.2■■□□□ 1.15
CPSF3-201ENST00000238112 MAP3K11Q16584 847 aa22.2■■□□□ 1.15
CPSF3-201ENST00000238112 PROSER2Q86WR7 435 aaPredicted RBP22.2■■□□□ 1.15
CPSF3-201ENST00000238112 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.2■■□□□ 1.151e-6■■■□□ 15.3
CPSF3-201ENST00000238112 SCN11AQ9UI33 1791 aa22.2■■□□□ 1.14
CPSF3-201ENST00000238112 PIP4K2AP48426 406 aaPredicted RBP22.2■■□□□ 1.14
CPSF3-201ENST00000238112 DNAJC2Q99543 621 aaKnown RBP22.2■■□□□ 1.14
CPSF3-201ENST00000238112 RFX7Q2KHR2 1363 aa22.2■■□□□ 1.14
CPSF3-201ENST00000238112 C1orf167Q5SNV9 1468 aa22.19■■□□□ 1.14
CPSF3-201ENST00000238112 CSB-PGBD3P0DP91 1061 aa22.19■■□□□ 1.14
CPSF3-201ENST00000238112 NOLC1Q14978 699 aaKnown RBP eCLIP22.19■■□□□ 1.14
CPSF3-201ENST00000238112 SPATA32Q96LK8 384 aa22.19■■□□□ 1.14
CPSF3-201ENST00000238112 FMNL2Q96PY5 1086 aa22.19■■□□□ 1.14
CPSF3-201ENST00000238112 NEK1Q96PY6 1258 aa22.19■■□□□ 1.14
CPSF3-201ENST00000238112 U3KPZ7 1027 aaPredicted RBP22.19■■□□□ 1.14
CPSF3-201ENST00000238112 RABL6Q3YEC7 729 aaPredicted RBP22.19■■□□□ 1.14
CPSF3-201ENST00000238112 LRP10Q7Z4F1 713 aa22.19■■□□□ 1.14
CPSF3-201ENST00000238112 LIG1P18858 919 aa22.18■■□□□ 1.14
CPSF3-201ENST00000238112 DCAF5Q96JK2 942 aa22.18■■□□□ 1.14
CPSF3-201ENST00000238112 KIF1AQ12756 1690 aa22.18■■□□□ 1.14
CPSF3-201ENST00000238112 A0A087WZG4 1122 aa22.18■■□□□ 1.14
CPSF3-201ENST00000238112 TRHP20396 242 aaPredicted RBP22.18■■□□□ 1.14
CPSF3-201ENST00000238112 MAP7D2Q96T17 732 aa22.18■■□□□ 1.14
CPSF3-201ENST00000238112 MST1RQ04912 1400 aa22.17■■□□□ 1.14
CPSF3-201ENST00000238112 MEGF6O75095 1541 aa22.17■■□□□ 1.14
CPSF3-201ENST00000238112 CAMK4Q16566 473 aa22.17■■□□□ 1.14
CPSF3-201ENST00000238112 FAM200AQ8TCP9 573 aa22.17■■□□□ 1.14
CPSF3-201ENST00000238112 GTF3C6Q969F1 213 aa22.17■■□□□ 1.14
CPSF3-201ENST00000238112 NDUFB9Q9Y6M9 179 aa22.17■■□□□ 1.14
CPSF3-201ENST00000238112 ATP5J2-PTCD1G3V325 749 aa22.17■■□□□ 1.14
CPSF3-201ENST00000238112 PTCD1O75127 700 aaKnown RBP22.17■■□□□ 1.14
CPSF3-201ENST00000238112 HSP90B1P14625 803 aaKnown RBP22.17■■□□□ 1.14
CPSF3-201ENST00000238112 MCMDC2Q4G0Z9 681 aa22.17■■□□□ 1.14
CPSF3-201ENST00000238112 DBNDD2Q9BQY9 259 aa22.17■■□□□ 1.14
CPSF3-201ENST00000238112 TNMDQ9H2S6 317 aa22.17■■□□□ 1.14
CPSF3-201ENST00000238112 TFIP11Q9UBB9 837 aaKnown RBP22.17■■□□□ 1.14
CPSF3-201ENST00000238112 COL15A1P39059 1388 aa22.17■■□□□ 1.14
CPSF3-201ENST00000238112 TPM3P06753 285 aa22.16■■□□□ 1.14
CPSF3-201ENST00000238112 HAUS7Q99871 368 aa22.16■■□□□ 1.14
CPSF3-201ENST00000238112 ZNF609O15014 1411 aa22.16■■□□□ 1.14
CPSF3-201ENST00000238112 TYRO3Q06418 890 aa22.15■■□□□ 1.14
CPSF3-201ENST00000238112 CCDC129Q6ZRS4 1044 aa22.15■■□□□ 1.14
CPSF3-201ENST00000238112 LEO1Q8WVC0 666 aaPredicted RBP22.15■■□□□ 1.14
CPSF3-201ENST00000238112 C19orf44Q9H6X5 657 aa22.15■■□□□ 1.14
CPSF3-201ENST00000238112 DACT1Q9NYF0 836 aa22.15■■□□□ 1.14
CPSF3-201ENST00000238112 GOLGA6L6A8MZA4 724 aa22.15■■□□□ 1.14
CPSF3-201ENST00000238112 AP5Z1O43299 807 aa22.15■■□□□ 1.14
CPSF3-201ENST00000238112 Q6ZUG5 572 aa22.15■■□□□ 1.14
CPSF3-201ENST00000238112 DDX19AQ9NUU7 478 aaKnown RBP22.15■■□□□ 1.14
CPSF3-201ENST00000238112 JAK2O60674 1132 aa22.14■■□□□ 1.14
CPSF3-201ENST00000238112 FGD1P98174 961 aa22.14■■□□□ 1.13
CPSF3-201ENST00000238112 DDX46Q7L014 1031 aaKnown RBP22.14■■□□□ 1.13
CPSF3-201ENST00000238112 SEC62Q99442 399 aaKnown RBP22.14■■□□□ 1.13
CPSF3-201ENST00000238112 H3BQV1 296 aa22.13■■□□□ 1.13
CPSF3-201ENST00000238112 IFFO2Q5TF58 517 aa22.13■■□□□ 1.13
CPSF3-201ENST00000238112 PLBD2Q8NHP8 589 aa22.13■■□□□ 1.13
CPSF3-201ENST00000238112 MRVI1Q9Y6F6 885 aa22.13■■□□□ 1.13
CPSF3-201ENST00000238112 CYP27B1O15528 508 aa22.13■■□□□ 1.13
CPSF3-201ENST00000238112 CYP21A2P08686 494 aa22.13■■□□□ 1.13
CPSF3-201ENST00000238112 CABP4P57796 275 aa22.13■■□□□ 1.13
CPSF3-201ENST00000238112 CKAP2LQ8IYA6 745 aa22.13■■□□□ 1.13
CPSF3-201ENST00000238112 BRF1Q92994 677 aa22.13■■□□□ 1.13
CPSF3-201ENST00000238112 PRIMPOLQ96LW4 560 aa22.13■■□□□ 1.13
CPSF3-201ENST00000238112 SPTLC3Q9NUV7 552 aa22.13■■□□□ 1.13
CPSF3-201ENST00000238112 ALS2Q96Q42 1657 aa22.12■■□□□ 1.13
CPSF3-201ENST00000238112 LMBR1LQ6UX01 489 aa22.12■■□□□ 1.13
CPSF3-201ENST00000238112 C17orf53Q8N3J3 647 aaPredicted RBP22.12■■□□□ 1.13
CPSF3-201ENST00000238112 BICD2Q8TD16 824 aa22.12■■□□□ 1.13
CPSF3-201ENST00000238112 AFDNP55196 1824 aaKnown RBP22.12■■□□□ 1.13
CPSF3-201ENST00000238112 CHGBP05060 677 aa22.12■■□□□ 1.13
CPSF3-201ENST00000238112 HMGN5P82970 282 aaKnown RBP22.12■■□□□ 1.13
CPSF3-201ENST00000238112 KBTBD3Q8NAB2 608 aa22.12■■□□□ 1.13
CPSF3-201ENST00000238112 SPC24Q8NBT2 197 aa22.12■■□□□ 1.13
CPSF3-201ENST00000238112 MYRIPQ8NFW9 859 aa22.12■■□□□ 1.13
CPSF3-201ENST00000238112 CCDC9Q9Y3X0 531 aaKnown RBP22.12■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms