RNA–Protein interactions for RNA: ENST00000233146.6

MSH2-201, Transcript of mutS homolog 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH2, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-201ENST00000233146 ARHGEF40Q8TER5 1519 aa15.12■□□□□ 0.01
MSH2-201ENST00000233146 ABCA6Q8N139 1617 aa15.12■□□□□ 0.01
MSH2-201ENST00000233146 CCP110O43303 1012 aa15.12■□□□□ 0.01
MSH2-201ENST00000233146 GPTP24298 496 aa15.12■□□□□ 0.01
MSH2-201ENST00000233146 LIG3P49916 1009 aa15.12■□□□□ 0.01
MSH2-201ENST00000233146 NEDD9Q14511 834 aa15.12■□□□□ 0.01
MSH2-201ENST00000233146 CNNM3Q8NE01 707 aa15.12■□□□□ 0.01
MSH2-201ENST00000233146 JPH2Q9BR39 696 aaPredicted RBP15.12■□□□□ 0.01
MSH2-201ENST00000233146 NPHP3Q7Z494 1330 aa15.12■□□□□ 0.01
MSH2-201ENST00000233146 AK2P54819 239 aa15.12■□□□□ 0.01
MSH2-201ENST00000233146 DDR1Q08345 913 aa15.12■□□□□ 0.01
MSH2-201ENST00000233146 SCRN1Q12765 414 aa15.12■□□□□ 0.01
MSH2-201ENST00000233146 HDXQ7Z353 690 aa15.12■□□□□ 0.01
MSH2-201ENST00000233146 NR1I2O75469 434 aa15.11■□□□□ 0.01
MSH2-201ENST00000233146 MAP3K9P80192 1104 aa15.11■□□□□ 0.01
MSH2-201ENST00000233146 BEND6Q5SZJ8 279 aaPredicted RBP15.11■□□□□ 0.01
MSH2-201ENST00000233146 CEP85Q6P2H3 762 aa15.11■□□□□ 0.01
MSH2-201ENST00000233146 ITFG2Q969R8 447 aa15.11■□□□□ 0.01
MSH2-201ENST00000233146 BICC1Q9H694 974 aaKnown RBP15.11■□□□□ 0.01
MSH2-201ENST00000233146 GNL2Q13823 731 aaKnown RBP15.11■□□□□ 0.01
MSH2-201ENST00000233146 TTC19Q6DKK2 380 aaPredicted RBP15.11■□□□□ 0.01
MSH2-201ENST00000233146 APBB1O00213 710 aa15.1■□□□□ 0.01
MSH2-201ENST00000233146 EIF3JO75822 258 aaKnown RBP15.1■□□□□ 0.01
MSH2-201ENST00000233146 NEBLO76041 1014 aa15.1■□□□□ 0.01
MSH2-201ENST00000233146 TXLNAP40222 546 aa15.1■□□□□ 0.01
MSH2-201ENST00000233146 MCM6Q14566 821 aa15.1■□□□□ 0.01
MSH2-201ENST00000233146 DHX40Q8IX18 779 aaKnown RBP15.1■□□□□ 0.01
MSH2-201ENST00000233146 API5Q9BZZ5 524 aaKnown RBP15.1■□□□□ 0.01
MSH2-201ENST00000233146 FAM71BQ8TC56 605 aa15.1■□□□□ 0.01
MSH2-201ENST00000233146 KIAA1210Q9ULL0 1709 aa15.1■□□□□ 0.01
MSH2-201ENST00000233146 NBPF5PQ86XG9 351 aaPredicted RBP15.1■□□□□ 0.01
MSH2-201ENST00000233146 TEX11Q8IYF3 940 aa15.1■□□□□ 0.01
MSH2-201ENST00000233146 VEZTQ9HBM0 779 aa15.1■□□□□ 0.01
MSH2-201ENST00000233146 VPS37CA5D8V6 355 aaPredicted RBP15.09■□□□□ 0.01
MSH2-201ENST00000233146 GOLGA6L4A6NEF3 574 aa15.09■□□□□ 0.01
MSH2-201ENST00000233146 PAX7P23759 505 aa15.09■□□□□ 0.01
MSH2-201ENST00000233146 PPP2R3AQ06190 1150 aa15.09■□□□□ 0.01
MSH2-201ENST00000233146 TTC36A6NLP5 189 aa15.09■□□□□ 0.01
MSH2-201ENST00000233146 GCFC2P16383 781 aaKnown RBP15.09■□□□□ 0.01
MSH2-201ENST00000233146 PSME1Q06323 249 aa15.09■□□□□ 0.01
MSH2-201ENST00000233146 DHX8Q14562 1220 aaKnown RBP15.09■□□□□ 0.01
MSH2-201ENST00000233146 PRPF38AQ8NAV1 312 aaKnown RBP15.09■□□□□ 0.01
MSH2-201ENST00000233146 SCAND2PQ9GZW5 306 aaPredicted RBP15.09■□□□□ 0.01
MSH2-201ENST00000233146 BECN2A8MW95 431 aa15.09■□□□□ 0.01
MSH2-201ENST00000233146 SFPQP23246 707 aaKnown RBP eCLIP15.09■□□□□ 0.01
MSH2-201ENST00000233146 USP5P45974 858 aa15.09■□□□□ 0.01
MSH2-201ENST00000233146 SETQ01105 290 aaPredicted RBP15.09■□□□□ 0.01
MSH2-201ENST00000233146 STX1AQ16623 288 aa15.09■□□□□ 0.01
MSH2-201ENST00000233146 FMNL3Q8IVF7 1028 aa15.09■□□□□ 0.01
MSH2-201ENST00000233146 MPHOSPH8Q99549 860 aa15.09■□□□□ 0.01
MSH2-201ENST00000233146 LARP6Q9BRS8 491 aaKnown RBP15.09■□□□□ 0.01
MSH2-201ENST00000233146 CTCFLQ8NI51 663 aaPredicted RBP15.08■□□□□ 0
MSH2-201ENST00000233146 GOLGA1Q92805 767 aa15.08■□□□□ 0
MSH2-201ENST00000233146 UTP14AQ9BVJ6 771 aaKnown RBP15.08■□□□□ 0
MSH2-201ENST00000233146 L1RE1Q9UN81 338 aa15.08■□□□□ 0
MSH2-201ENST00000233146 MRFAP1Q9Y605 127 aa15.08■□□□□ 0
MSH2-201ENST00000233146 LARGE1O95461 756 aa15.08■□□□□ 0
MSH2-201ENST00000233146 SLC24A3Q9HC58 644 aa15.08■□□□□ 0
MSH2-201ENST00000233146 TERF2IPQ9NYB0 399 aa15.08■□□□□ 0
MSH2-201ENST00000233146 NRDCO43847 1150 aa15.07■□□□□ 0
MSH2-201ENST00000233146 IFIT2P09913 472 aaKnown RBP15.07■□□□□ 0
MSH2-201ENST00000233146 TSPYL6Q8N831 410 aa15.07■□□□□ 0
MSH2-201ENST00000233146 TATDN2Q93075 761 aa15.07■□□□□ 0
MSH2-201ENST00000233146 DDX11Q96FC9 970 aa15.07■□□□□ 0
MSH2-201ENST00000233146 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.07■□□□□ 06e-7■□□□□ 9.5
MSH2-201ENST00000233146 TBC1D8BQ0IIM8 1120 aa15.07■□□□□ 0
MSH2-201ENST00000233146 CLIC6Q96NY7 704 aa15.07■□□□□ 0
MSH2-201ENST00000233146 ZC3H13Q5T200 1668 aaKnown RBP15.07■□□□□ 0
MSH2-201ENST00000233146 HNRNPMP52272 730 aaKnown RBP eCLIP15.07■□□□□ 0
MSH2-201ENST00000233146 LEO1Q8WVC0 666 aaPredicted RBP15.07■□□□□ 0
MSH2-201ENST00000233146 N4BP2L2Q92802 583 aaPredicted RBP15.07■□□□□ 0
MSH2-201ENST00000233146 SALL3Q9BXA9 1300 aa15.07■□□□□ 0
MSH2-201ENST00000233146 FAM173BQ6P4H8 233 aa15.06■□□□□ 0
MSH2-201ENST00000233146 POTEDQ86YR6 584 aa15.06■□□□□ 0
MSH2-201ENST00000233146 CCDC83Q8IWF9 413 aa15.06■□□□□ 0
MSH2-201ENST00000233146 SPATA32Q96LK8 384 aa15.06■□□□□ 0
MSH2-201ENST00000233146 SNX14Q9Y5W7 946 aa15.06■□□□□ 0
MSH2-201ENST00000233146 FAM169AQ9Y6X4 670 aa15.06■□□□□ 0
MSH2-201ENST00000233146 KIAA0556O60303 1618 aa15.06■□□□□ 0
MSH2-201ENST00000233146 CRYMQ14894 314 aa15.06■□□□□ 0
MSH2-201ENST00000233146 ZC3H12AQ5D1E8 599 aaKnown RBP15.06■□□□□ 0
MSH2-201ENST00000233146 PGBD1Q96JS3 809 aa15.06■□□□□ 0
MSH2-201ENST00000233146 CABS1Q96KC9 395 aa15.06■□□□□ 0
MSH2-201ENST00000233146 FAM204AQ9H8W3 233 aa15.06■□□□□ 0
MSH2-201ENST00000233146 RAB21Q9UL25 225 aa15.06■□□□□ 0
MSH2-201ENST00000233146 SBNO2Q9Y2G9 1366 aa15.05■□□□□ 0
MSH2-201ENST00000233146 MPHOSPH10O00566 681 aaKnown RBP15.05■□□□□ 0
MSH2-201ENST00000233146 GRIK3Q13003 919 aa15.05■□□□□ 0
MSH2-201ENST00000233146 PREPLQ4J6C6 727 aaPredicted RBP15.05■□□□□ 0
MSH2-201ENST00000233146 STAG3Q9UJ98 1225 aa15.05■□□□□ 0
MSH2-201ENST00000233146 CCDC9Q9Y3X0 531 aaKnown RBP15.05■□□□□ 0
MSH2-201ENST00000233146 ZKSCAN4Q969J2 545 aaPredicted RBP15.05■□□□□ -0
MSH2-201ENST00000233146 TMC6Q7Z403 805 aa15.05■□□□□ -0
MSH2-201ENST00000233146 SLC12A5Q9H2X9 1139 aa15.05■□□□□ -0
MSH2-201ENST00000233146 RTN2O75298 545 aa15.04■□□□□ -0
MSH2-201ENST00000233146 MRPL12P52815 198 aaKnown RBP15.04■□□□□ -0
MSH2-201ENST00000233146 HSP90B2PQ58FF3 399 aa15.04■□□□□ -0
MSH2-201ENST00000233146 TRIM6Q9C030 488 aaPredicted RBP15.04■□□□□ -0
MSH2-201ENST00000233146 HYPKQ9NX55 129 aa15.04■□□□□ -0
MSH2-201ENST00000233146 DTNBO60941 627 aa15.04■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 104.9 ms