RNA–Protein interactions for RNA: ENST00000216639.7

VRK1-201, Transcript of vaccinia related kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VRK1, Length 1,745 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-201ENST00000216639 DBNDD2Q9BQY9 259 aa21.04■□□□□ 0.96
VRK1-201ENST00000216639 LSG1Q9H089 658 aaKnown RBP21.04■□□□□ 0.96
VRK1-201ENST00000216639 IL25Q9H293 177 aa21.04■□□□□ 0.96
VRK1-201ENST00000216639 CEP126Q9P2H0 1117 aa21.04■□□□□ 0.96
VRK1-201ENST00000216639 ZNF831Q5JPB2 1677 aa21.04■□□□□ 0.96
VRK1-201ENST00000216639 IRS4O14654 1257 aaPredicted RBP21.04■□□□□ 0.96
VRK1-201ENST00000216639 AK7Q96M32 723 aa21.04■□□□□ 0.96
VRK1-201ENST00000216639 NEUROD6Q96NK8 337 aa21.04■□□□□ 0.96
VRK1-201ENST00000216639 AKAP2Q9Y2D5 859 aa21.04■□□□□ 0.96
VRK1-201ENST00000216639 FRAT2O75474 233 aaPredicted RBP21.03■□□□□ 0.96
VRK1-201ENST00000216639 DDIT3P35638 169 aa21.03■□□□□ 0.96
VRK1-201ENST00000216639 NEK4P51957 841 aa21.03■□□□□ 0.96
VRK1-201ENST00000216639 LRRC24Q50LG9 513 aa21.03■□□□□ 0.96
VRK1-201ENST00000216639 RFX7Q2KHR2 1363 aa21.03■□□□□ 0.96
VRK1-201ENST00000216639 PDE8AO60658 829 aa21.02■□□□□ 0.96
VRK1-201ENST00000216639 CTSWP56202 376 aa21.02■□□□□ 0.96
VRK1-201ENST00000216639 HAUS7Q99871 368 aa21.02■□□□□ 0.96
VRK1-201ENST00000216639 PALD1Q9ULE6 856 aa21.02■□□□□ 0.96
VRK1-201ENST00000216639 ZNF609O15014 1411 aa21.02■□□□□ 0.96
VRK1-201ENST00000216639 PARP10Q53GL7 1025 aa21.01■□□□□ 0.95
VRK1-201ENST00000216639 TTLL11Q8NHH1 800 aa21.01■□□□□ 0.95
VRK1-201ENST00000216639 ANKRD18BA2A2Z9 1011 aa21.01■□□□□ 0.95
VRK1-201ENST00000216639 HSP90B1P14625 803 aaKnown RBP21.01■□□□□ 0.95
VRK1-201ENST00000216639 TICAM2Q86XR7 235 aa21.01■□□□□ 0.95
VRK1-201ENST00000216639 ZNF652Q9Y2D9 606 aa21.01■□□□□ 0.95
VRK1-201ENST00000216639 THSD7AQ9UPZ6 1657 aa21■□□□□ 0.95
VRK1-201ENST00000216639 NMIQ13287 307 aaPredicted RBP21■□□□□ 0.95
VRK1-201ENST00000216639 PUS3Q9BZE2 481 aaKnown RBP21■□□□□ 0.95
VRK1-201ENST00000216639 SNRKQ9NRH2 765 aa21■□□□□ 0.95
VRK1-201ENST00000216639 UBN2Q6ZU65 1347 aa21■□□□□ 0.95
VRK1-201ENST00000216639 A0A1B0GUL7 405 aa20.99■□□□□ 0.95
VRK1-201ENST00000216639 CAMTA2O94983 1202 aa20.99■□□□□ 0.95
VRK1-201ENST00000216639 ITGA6P23229 1130 aa20.99■□□□□ 0.95
VRK1-201ENST00000216639 CCDC85AQ96PX6 553 aaPredicted RBP20.99■□□□□ 0.95
VRK1-201ENST00000216639 DNAJC2Q99543 621 aaKnown RBP20.99■□□□□ 0.95
VRK1-201ENST00000216639 COL5A3P25940 1745 aaPredicted RBP20.99■□□□□ 0.95
VRK1-201ENST00000216639 SH3TC1Q8TE82 1336 aa20.99■□□□□ 0.95
VRK1-201ENST00000216639 TIMM10P62072 90 aa20.98■□□□□ 0.95
VRK1-201ENST00000216639 UTP14AQ9BVJ6 771 aaKnown RBP20.98■□□□□ 0.95
VRK1-201ENST00000216639 MYH3P11055 1940 aa20.98■□□□□ 0.95
VRK1-201ENST00000216639 SYNE4Q8N205 404 aa20.98■□□□□ 0.95
VRK1-201ENST00000216639 GJD4Q96KN9 370 aaPredicted RBP20.98■□□□□ 0.95
VRK1-201ENST00000216639 FAM227BQ96M60 508 aa20.98■□□□□ 0.95
VRK1-201ENST00000216639 GREM2Q9H772 168 aa20.98■□□□□ 0.95
VRK1-201ENST00000216639 CCDC171Q6TFL3 1326 aa20.97■□□□□ 0.95
VRK1-201ENST00000216639 CCDC158Q5M9N0 1113 aa20.97■□□□□ 0.95
VRK1-201ENST00000216639 LDHAL6AQ6ZMR3 332 aa20.97■□□□□ 0.95
VRK1-201ENST00000216639 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.97■□□□□ 0.95
VRK1-201ENST00000216639 CWC22Q9HCG8 908 aaKnown RBP20.97■□□□□ 0.95
VRK1-201ENST00000216639 FOXD4L1Q9NU39 408 aa20.97■□□□□ 0.95
VRK1-201ENST00000216639 HSPA1LP34931 641 aa20.96■□□□□ 0.95
VRK1-201ENST00000216639 GORABQ5T7V8 394 aa20.96■□□□□ 0.95
VRK1-201ENST00000216639 SNX14Q9Y5W7 946 aa20.96■□□□□ 0.95
VRK1-201ENST00000216639 CNTNAP4Q9C0A0 1308 aa20.96■□□□□ 0.95
VRK1-201ENST00000216639 KCNJ4P48050 445 aa20.95■□□□□ 0.94
VRK1-201ENST00000216639 SUSD4Q5VX71 490 aa20.95■□□□□ 0.94
VRK1-201ENST00000216639 CLEC4GQ6UXB4 293 aa20.95■□□□□ 0.94
VRK1-201ENST00000216639 CNNM1Q9NRU3 951 aa20.95■□□□□ 0.94
VRK1-201ENST00000216639 MYH14Q7Z406 1995 aaKnown RBP20.95■□□□□ 0.94
VRK1-201ENST00000216639 A0A0D9SFI3 127 aa20.95■□□□□ 0.94
VRK1-201ENST00000216639 IFIT1P09914 478 aaKnown RBP20.95■□□□□ 0.94
VRK1-201ENST00000216639 ZKSCAN1P17029 563 aaPredicted RBP20.95■□□□□ 0.94
VRK1-201ENST00000216639 PTH1RQ03431 593 aa20.95■□□□□ 0.94
VRK1-201ENST00000216639 METTL24Q5JXM2 366 aa20.95■□□□□ 0.94
VRK1-201ENST00000216639 KBTBD3Q8NAB2 608 aa20.95■□□□□ 0.94
VRK1-201ENST00000216639 LINC00116Q8NCU8 138 aa20.95■□□□□ 0.94
VRK1-201ENST00000216639 NIP7Q9Y221 180 aaKnown RBP eCLIP20.95■□□□□ 0.94
VRK1-201ENST00000216639 AFF2P51816 1311 aa20.95■□□□□ 0.94
VRK1-201ENST00000216639 NHSQ6T4R5 1651 aa20.94■□□□□ 0.94
VRK1-201ENST00000216639 RGL2O15211 777 aa20.94■□□□□ 0.94
VRK1-201ENST00000216639 MAP4K1Q92918 833 aa20.94■□□□□ 0.94
VRK1-201ENST00000216639 EDC3Q96F86 508 aaKnown RBP20.94■□□□□ 0.94
VRK1-201ENST00000216639 PAG1Q9NWQ8 432 aa20.94■□□□□ 0.94
VRK1-201ENST00000216639 TRPC5Q9UL62 973 aaPredicted RBP20.94■□□□□ 0.94
VRK1-201ENST00000216639 RIPOR2Q9Y4F9 1068 aa20.94■□□□□ 0.94
VRK1-201ENST00000216639 MED23Q9ULK4 1368 aa20.94■□□□□ 0.94
VRK1-201ENST00000216639 RAB3GAP1Q15042 981 aa20.93■□□□□ 0.94
VRK1-201ENST00000216639 TTC39AQ5SRH9 613 aa20.93■□□□□ 0.94
VRK1-201ENST00000216639 RNF20Q5VTR2 975 aa20.93■□□□□ 0.94
VRK1-201ENST00000216639 KCNB2Q92953 911 aa20.93■□□□□ 0.94
VRK1-201ENST00000216639 LRRFIP1Q32MZ4 808 aaKnown RBP20.92■□□□□ 0.94
VRK1-201ENST00000216639 DDX46Q7L014 1031 aaKnown RBP20.92■□□□□ 0.94
VRK1-201ENST00000216639 UPF3BQ9BZI7 483 aaKnown RBP20.92■□□□□ 0.94
VRK1-201ENST00000216639 SPEF2Q9C093 1822 aa20.92■□□□□ 0.94
VRK1-201ENST00000216639 GOLIM4O00461 696 aa20.92■□□□□ 0.94
VRK1-201ENST00000216639 NUCB2P80303 420 aa20.92■□□□□ 0.94
VRK1-201ENST00000216639 NECTIN1Q15223 517 aa20.92■□□□□ 0.94
VRK1-201ENST00000216639 ATP2B3Q16720 1220 aa20.92■□□□□ 0.94
VRK1-201ENST00000216639 RC3H1Q5TC82 1133 aaKnown RBP20.92■□□□□ 0.94
VRK1-201ENST00000216639 PRPF40BQ6NWY9 871 aaKnown RBP20.92■□□□□ 0.94
VRK1-201ENST00000216639 XAGE2Q96GT9 111 aa20.92■□□□□ 0.94
VRK1-201ENST00000216639 TMX3Q96JJ7 454 aa20.92■□□□□ 0.94
VRK1-201ENST00000216639 RBM8AQ9Y5S9 174 aaKnown RBP20.92■□□□□ 0.94
VRK1-201ENST00000216639 BCORQ6W2J9 1755 aa20.91■□□□□ 0.94
VRK1-201ENST00000216639 RIC1Q4ADV7 1423 aa20.91■□□□□ 0.94
VRK1-201ENST00000216639 ABCC12Q96J65 1359 aa20.91■□□□□ 0.94
VRK1-201ENST00000216639 MCM4P33991 863 aa20.91■□□□□ 0.94
VRK1-201ENST00000216639 MCMDC2Q4G0Z9 681 aa20.91■□□□□ 0.94
VRK1-201ENST00000216639 GBP4Q96PP9 640 aa20.91■□□□□ 0.94
VRK1-201ENST00000216639 TM6SF1Q9BZW5 370 aa20.91■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms