RNA–Protein interactions for RNA: ENSMUST00000173369.1

Trim39-205, Transcript of E3 ubiquitin-protein ligase TRIM39, mousemouse

TSL 1 (best) BASIC

Gene Trim39, Length 2,914 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39-205ENSMUST00000173369 Myh1Q5SX40 1942 aa10.36□□□□□ -0.75
Trim39-205ENSMUST00000173369 Zbtb45Q52KG4 520 aa10.36□□□□□ -0.75
Trim39-205ENSMUST00000173369 AbraQ8BUZ1 375 aa10.36□□□□□ -0.75
Trim39-205ENSMUST00000173369 Ciapin1Q8WTY4 309 aa10.36□□□□□ -0.75
Trim39-205ENSMUST00000173369 Sh3bp5Q9Z131 463 aa10.36□□□□□ -0.75
Trim39-205ENSMUST00000173369 Ttc41Q692V3 1318 aa10.36□□□□□ -0.75
Trim39-205ENSMUST00000173369 Prdm11A2AGX3 565 aa10.35□□□□□ -0.75
Trim39-205ENSMUST00000173369 Prr29B1ARI9 187 aa10.35□□□□□ -0.75
Trim39-205ENSMUST00000173369 Neurod6P48986 337 aa10.35□□□□□ -0.75
Trim39-205ENSMUST00000173369 Ell2Q3UKU1 639 aa10.35□□□□□ -0.75
Trim39-205ENSMUST00000173369 Sde2Q8K1J5 448 aaKnown RBP10.35□□□□□ -0.75
Trim39-205ENSMUST00000173369 Smarca5Q91ZW3 1051 aaKnown RBP10.35□□□□□ -0.75
Trim39-205ENSMUST00000173369 Rlbp1Q9Z275 317 aa10.35□□□□□ -0.75
Trim39-205ENSMUST00000173369 Kif13bA0A286YCV9 1847 aa10.35□□□□□ -0.75
Trim39-205ENSMUST00000173369 AU019823E9PUQ3 292 aa10.35□□□□□ -0.75
Trim39-205ENSMUST00000173369 Ier5O89113 308 aa10.35□□□□□ -0.75
Trim39-205ENSMUST00000173369 Csf1rP09581 977 aa10.35□□□□□ -0.75
Trim39-205ENSMUST00000173369 Hsp90ab1P11499 724 aaKnown RBP10.35□□□□□ -0.75
Trim39-205ENSMUST00000173369 Gpr182P43142 395 aa10.35□□□□□ -0.75
Trim39-205ENSMUST00000173369 Nlrp9bQ66X22 1003 aa10.35□□□□□ -0.75
Trim39-205ENSMUST00000173369 Smc4Q8CG47 1286 aa10.35□□□□□ -0.75
Trim39-205ENSMUST00000173369 Tceal9Q9DD24 104 aa10.35□□□□□ -0.75
Trim39-205ENSMUST00000173369 EvplQ9D952 2035 aa10.34□□□□□ -0.75
Trim39-205ENSMUST00000173369 Camkk2Q8C078 588 aa10.34□□□□□ -0.75
Trim39-205ENSMUST00000173369 Spire2Q8K1S6 718 aa10.34□□□□□ -0.75
Trim39-205ENSMUST00000173369 Rnaseh2aQ9CWY8 301 aa10.34□□□□□ -0.75
Trim39-205ENSMUST00000173369 Ehd4Q9EQP2 541 aa10.34□□□□□ -0.75
Trim39-205ENSMUST00000173369 Lmnb1P14733 588 aaKnown RBP10.34□□□□□ -0.75
Trim39-205ENSMUST00000173369 Casp1P29452 402 aa10.34□□□□□ -0.75
Trim39-205ENSMUST00000173369 Glg1Q61543 1175 aaKnown RBP10.34□□□□□ -0.75
Trim39-205ENSMUST00000173369 Strip1Q8C079 837 aa10.34□□□□□ -0.75
Trim39-205ENSMUST00000173369 Sh3tc1G3X9F6 1346 aa10.34□□□□□ -0.75
Trim39-205ENSMUST00000173369 InsrrQ9WTL4 1300 aa10.34□□□□□ -0.75
Trim39-205ENSMUST00000173369 Calr4Q3TQS0 420 aa10.34□□□□□ -0.75
Trim39-205ENSMUST00000173369 DekQ7TNV0 380 aaKnown RBP10.34□□□□□ -0.75
Trim39-205ENSMUST00000173369 Pdzph1Q8BGR1 1238 aa10.34□□□□□ -0.75
Trim39-205ENSMUST00000173369 Lama4P97927 1816 aa10.33□□□□□ -0.76
Trim39-205ENSMUST00000173369 Col4a5Q63ZW6 1691 aa10.33□□□□□ -0.76
Trim39-205ENSMUST00000173369 Eif3aP23116 1344 aaKnown RBP10.33□□□□□ -0.76
Trim39-205ENSMUST00000173369 Bin2D3Z6Q9 489 aa10.33□□□□□ -0.76
Trim39-205ENSMUST00000173369 Hsp90aa1P07901 733 aaKnown RBP10.33□□□□□ -0.76
Trim39-205ENSMUST00000173369 Nedd4P46935 887 aaKnown RBP10.33□□□□□ -0.76
Trim39-205ENSMUST00000173369 Znf496Q5SXI5 585 aa10.33□□□□□ -0.76
Trim39-205ENSMUST00000173369 4930504O13RikQ8C5Z9 145 aa10.33□□□□□ -0.76
Trim39-205ENSMUST00000173369 Naa16Q9DBB4 864 aa10.33□□□□□ -0.76
Trim39-205ENSMUST00000173369 Adarb2Q9JI20 745 aa10.33□□□□□ -0.76
Trim39-205ENSMUST00000173369 Mtcl1Q3UHU5 1945 aa10.33□□□□□ -0.76
Trim39-205ENSMUST00000173369 Oas2E9Q9A9 742 aa10.33□□□□□ -0.76
Trim39-205ENSMUST00000173369 Gpr162Q3UN16 588 aa10.33□□□□□ -0.76
Trim39-205ENSMUST00000173369 Duox1A2AQ92 1551 aa10.33□□□□□ -0.76
Trim39-205ENSMUST00000173369 Atp6v0a2P15920 856 aa10.32□□□□□ -0.76
Trim39-205ENSMUST00000173369 Rps8P62242 208 aaKnown RBP10.32□□□□□ -0.76
Trim39-205ENSMUST00000173369 VaspP70460 375 aaKnown RBP10.32□□□□□ -0.76
Trim39-205ENSMUST00000173369 Fam13aQ8BGI4 693 aa10.32□□□□□ -0.76
Trim39-205ENSMUST00000173369 Dbr1Q923B1 550 aa10.32□□□□□ -0.76
Trim39-205ENSMUST00000173369 Gdf11Q9Z1W4 405 aa10.32□□□□□ -0.76
Trim39-205ENSMUST00000173369 1700029H14RikE9PY36 240 aa10.32□□□□□ -0.76
Trim39-205ENSMUST00000173369 Tmem143Q8VD26 458 aa10.32□□□□□ -0.76
Trim39-205ENSMUST00000173369 Ptf1aQ9QX98 324 aa10.32□□□□□ -0.76
Trim39-205ENSMUST00000173369 Plch1Q4KWH5 1682 aa10.32□□□□□ -0.76
Trim39-205ENSMUST00000173369 Cyp2c68K7N6C2 491 aa10.31□□□□□ -0.76
Trim39-205ENSMUST00000173369 Akap2O54931 893 aa10.31□□□□□ -0.76
Trim39-205ENSMUST00000173369 Atp6v1aP50516 617 aaKnown RBP10.31□□□□□ -0.76
Trim39-205ENSMUST00000173369 Timm10P62073 90 aa10.31□□□□□ -0.76
Trim39-205ENSMUST00000173369 Rrp9Q91WM3 475 aaKnown RBP10.31□□□□□ -0.76
Trim39-205ENSMUST00000173369 Zcwpw1Q6IR42 630 aa10.31□□□□□ -0.76
Trim39-205ENSMUST00000173369 Skor1Q8BX46 964 aa10.31□□□□□ -0.76
Trim39-205ENSMUST00000173369 Ptcd1Q8C2E4 695 aaKnown RBP10.31□□□□□ -0.76
Trim39-205ENSMUST00000173369 Podxl2Q8CAE9 603 aa10.31□□□□□ -0.76
Trim39-205ENSMUST00000173369 Dis3l2Q8CI75 870 aaKnown RBP10.31□□□□□ -0.76
Trim39-205ENSMUST00000173369 Plcd3Q8K2J0 785 aa10.31□□□□□ -0.76
Trim39-205ENSMUST00000173369 Mrps5Q99N87 432 aaKnown RBP10.31□□□□□ -0.76
Trim39-205ENSMUST00000173369 Ankrd31A0A140LI88 1765 aa10.31□□□□□ -0.76
Trim39-205ENSMUST00000173369 Sipa1l3G3X9J0 1776 aa10.31□□□□□ -0.76
Trim39-205ENSMUST00000173369 4931408C20RikE9PWP9 1381 aa10.31□□□□□ -0.76
Trim39-205ENSMUST00000173369 Lama2Q60675 3118 aaKnown RBP10.31□□□□□ -0.76
Trim39-205ENSMUST00000173369 Slc14a2Q8R4T9 930 aa10.3□□□□□ -0.76
Trim39-205ENSMUST00000173369 Plcb3P51432 1234 aaKnown RBP10.3□□□□□ -0.76
Trim39-205ENSMUST00000173369 Psd3Q2PFD7 1037 aa10.3□□□□□ -0.76
Trim39-205ENSMUST00000173369 Eif4g2Q62448 906 aaKnown RBP10.3□□□□□ -0.76
Trim39-205ENSMUST00000173369 Tgfb2P27090 414 aa10.3□□□□□ -0.76
Trim39-205ENSMUST00000173369 Ftl2P49945 183 aa10.3□□□□□ -0.76
Trim39-205ENSMUST00000173369 Mxd3Q80US8 206 aa10.3□□□□□ -0.76
Trim39-205ENSMUST00000173369 Tango6Q8C3S2 1079 aa10.3□□□□□ -0.76
Trim39-205ENSMUST00000173369 Zbtb3Q91X45 518 aa10.3□□□□□ -0.76
Trim39-205ENSMUST00000173369 Map3k15A2AQW0 1331 aa10.29□□□□□ -0.76
Trim39-205ENSMUST00000173369 Aknad1E9Q8N6 675 aa10.29□□□□□ -0.76
Trim39-205ENSMUST00000173369 Snrpa1P57784 255 aaKnown RBP10.29□□□□□ -0.76
Trim39-205ENSMUST00000173369 Zkscan8Q8BSL0 588 aa10.29□□□□□ -0.76
Trim39-205ENSMUST00000173369 FanclQ9CR14 375 aa10.29□□□□□ -0.76
Trim39-205ENSMUST00000173369 Stk36Q69ZM6 1316 aa10.29□□□□□ -0.76
Trim39-205ENSMUST00000173369 Prl3d3A0A0M6L0J6 224 aa10.29□□□□□ -0.76
Trim39-205ENSMUST00000173369 Sult6b1P0CC03 303 aa10.29□□□□□ -0.76
Trim39-205ENSMUST00000173369 Atp8b2P98199 1209 aa10.29□□□□□ -0.76
Trim39-205ENSMUST00000173369 Gjd4Q8BSD4 364 aa10.29□□□□□ -0.76
Trim39-205ENSMUST00000173369 Rbm17Q8JZX4 405 aaKnown RBP10.29□□□□□ -0.76
Trim39-205ENSMUST00000173369 Sf3b3Q921M3 1217 aaKnown RBP10.29□□□□□ -0.76
Trim39-205ENSMUST00000173369 Sart3Q9JLI8 962 aaKnown RBP10.29□□□□□ -0.76
Trim39-205ENSMUST00000173369 Znf521Q6KAS7 1311 aa10.28□□□□□ -0.76
Trim39-205ENSMUST00000173369 Olfr247E9PVJ7 320 aa10.28□□□□□ -0.76
Retrieved 100 of 22,080 RNA–protein pairs in 41.8 ms