RNA–Protein interactions for RNA: ENSMUST00000139560.7

Ndc1-204, Transcript of Nucleoporin NDC1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ndc1, Length 4,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ndc1-204ENSMUST00000139560 Atg4a-psA0A0G2JFS9 396 aa13.4□□□□□ -0.26
Ndc1-204ENSMUST00000139560 Fbf1A2A870 1173 aa13.4□□□□□ -0.26
Ndc1-204ENSMUST00000139560 Znf568E9PYI1 671 aa13.4□□□□□ -0.26
Ndc1-204ENSMUST00000139560 Mcmdc2E9Q956 681 aa13.4□□□□□ -0.26
Ndc1-204ENSMUST00000139560 Irf5P56477 497 aa13.4□□□□□ -0.26
Ndc1-204ENSMUST00000139560 Atg4aQ8C9S8 396 aa13.4□□□□□ -0.26
Ndc1-204ENSMUST00000139560 Atp12aQ9Z1W8 1035 aa13.4□□□□□ -0.26
Ndc1-204ENSMUST00000139560 Ccdc191J3QQ27 883 aa13.4□□□□□ -0.26
Ndc1-204ENSMUST00000139560 Pip4k2aO70172 405 aa13.4□□□□□ -0.26
Ndc1-204ENSMUST00000139560 Ccnl1Q52KE7 532 aaKnown RBP13.4□□□□□ -0.26
Ndc1-204ENSMUST00000139560 Ankle2Q6P1H6 964 aa13.4□□□□□ -0.26
Ndc1-204ENSMUST00000139560 Acnat2Q8BGG9 420 aa13.4□□□□□ -0.26
Ndc1-204ENSMUST00000139560 Dhx30Q99PU8 1217 aaKnown RBP13.4□□□□□ -0.26
Ndc1-204ENSMUST00000139560 Card6E9PWH2 1175 aa13.4□□□□□ -0.26
Ndc1-204ENSMUST00000139560 Dync1i1O88485 628 aa13.4□□□□□ -0.26
Ndc1-204ENSMUST00000139560 Lman1Q9D0F3 517 aa13.4□□□□□ -0.26
Ndc1-204ENSMUST00000139560 Irx4Q9QY61 515 aa13.4□□□□□ -0.26
Ndc1-204ENSMUST00000139560 Ankrd50F7BE84 1390 aa13.4□□□□□ -0.26
Ndc1-204ENSMUST00000139560 Gapvd1Q6PAR5 1458 aa13.39□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Wdr7Q920I9 1489 aa13.39□□□□□ -0.27
Ndc1-204ENSMUST00000139560 ChkbO55229 394 aa13.39□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Myl3P09542 204 aa13.39□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Tacc1Q6Y685 774 aa13.39□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Nrbp1Q99J45 535 aa13.39□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Luc7lQ9CYI4 371 aaKnown RBP13.39□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Cwc25Q9DBF7 416 aa13.39□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Ppp1r21Q3TDD9 780 aa13.39□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Vps54Q5SPW0 977 aa13.39□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Q9D5Q8 446 aa13.39□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Acot9Q9R0X4 439 aaKnown RBP13.39□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Rapgef6Q5NCJ1 1609 aa13.39□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Btn2a2A4QPC6 514 aa13.39□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Lekr1B2RVN1 116 aa13.39□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Slc7a3P70423 618 aa13.39□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Sptlc2P97363 560 aaKnown RBP13.39□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Nxf2Q4ZGD8 691 aa13.39□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Rbm42Q91V81 474 aaKnown RBP13.39□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Tab2Q99K90 693 aa13.39□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Hip1rQ9JKY5 1068 aa13.39□□□□□ -0.27
Ndc1-204ENSMUST00000139560 AmfrQ9R049 643 aa13.39□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Nsd3Q6P2L6 1439 aa13.38□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Nol7Q9D7Z3 254 aaKnown RBP13.38□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Ssh2Q5SW75 1423 aa13.38□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Pde4dQ01063 747 aa13.38□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Ncbp1Q3UYV9 790 aaKnown RBP13.38□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Skor1Q8BX46 964 aa13.38□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Slc14a2Q8R4T9 930 aa13.38□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Kdm4cQ8VCD7 1054 aa13.38□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Akr1c19G3X9Y6 323 aa13.38□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Gm21985Q6P6P5 1106 aa13.38□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Fez2Q6TYB5 348 aa13.38□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Wdhd1P59328 1117 aa13.37□□□□□ -0.27
Ndc1-204ENSMUST00000139560 4930548H24RikQ9D496 437 aa13.37□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Samd9lQ69Z37 1561 aa13.37□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Slc39a6Q8C145 765 aa13.37□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Dph6Q9CQ28 267 aa13.37□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Ankrd1Q9CR42 319 aa13.37□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Samd15F6XZJ7 620 aa13.37□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Map2k1P31938 393 aa13.37□□□□□ -0.27
Ndc1-204ENSMUST00000139560 RragbQ6NTA4 374 aa13.37□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Ccdc57Q6PHN1 1016 aa13.37□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Trerf1Q8BXJ2 1205 aa13.37□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Lrrfip2Q91WK0 415 aa13.37□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Capn12Q9ER56 720 aa13.37□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Atf7ipQ7TT18 1306 aa13.37□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Myl10Q62082 202 aa13.37□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Ccdc148Q6P5U8 527 aa13.37□□□□□ -0.27
Ndc1-204ENSMUST00000139560 GckrQ91X44 587 aa13.37□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Homer1Q9Z2Y3 366 aa13.37□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Rad50P70388 1312 aa13.37□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Ttc21aQ8C0S4 1314 aa13.37□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Prex2Q3LAC4 1598 aa13.36□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Diaph1O08808 1255 aa13.36□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Actn3O88990 900 aaKnown RBP13.36□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Scaf1Q5U4C3 1256 aaKnown RBP13.36□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Cep131Q62036 1060 aa13.36□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Knop1Q9Z2Q2 478 aaKnown RBP13.36□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Ppip5k1A2ARP1 1436 aa13.36□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Ier5O89113 308 aa13.36□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Hoxa7P02830 229 aa13.36□□□□□ -0.27
Ndc1-204ENSMUST00000139560 ArsiQ32KI9 573 aa13.36□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Mybbp1aQ7TPV4 1344 aaKnown RBP13.36□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Vps37dQ810I0 261 aa13.36□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Tmem87bQ8BKU8 555 aa13.36□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Wasf1Q8R5H6 559 aa13.36□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Rufy3Q9D394 469 aa13.36□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Amotl1Q9D4H4 968 aa13.36□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Nfxl1E9Q8I7 918 aaKnown RBP13.36□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Timm10P62073 90 aa13.36□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Eya1P97767 591 aa13.36□□□□□ -0.27
Ndc1-204ENSMUST00000139560 TchpQ3TVW5 497 aa13.36□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Cnot6lQ8VEG6 555 aa13.36□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Sept14Q9DA97 430 aa13.36□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Art2aP17981 287 aa13.35□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Zfp51Q3U4L8 781 aa13.35□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Utp18Q5SSI6 552 aaKnown RBP13.35□□□□□ -0.27
Ndc1-204ENSMUST00000139560 ParvgQ9ERD8 331 aa13.35□□□□□ -0.27
Ndc1-204ENSMUST00000139560 IqcgQ80W32 419 aa13.35□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Efcab2Q9CQ46 164 aa13.35□□□□□ -0.27
Ndc1-204ENSMUST00000139560 Sorbs3Q9R1Z8 733 aa13.35□□□□□ -0.27
Retrieved 100 of 22,080 RNA–protein pairs in 9.7 ms