RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 DLX1P56177 255 aa1.12□□□□□ -2.23
SCN1A-208ENST00000625916 HSF2Q03933 536 aa1.12□□□□□ -2.23
SCN1A-208ENST00000625916 TRIM16LQ309B1 348 aa1.12□□□□□ -2.23
SCN1A-208ENST00000625916 KRTAP6-3Q3LI67 103 aa1.12□□□□□ -2.23
SCN1A-208ENST00000625916 LINC01620Q4KN68 170 aa1.12□□□□□ -2.23
SCN1A-208ENST00000625916 C1QTNF12Q5T7M4 302 aa1.12□□□□□ -2.23
SCN1A-208ENST00000625916 C12orf60Q5U649 245 aa1.12□□□□□ -2.23
SCN1A-208ENST00000625916 TIGD3Q6B0B8 471 aa1.12□□□□□ -2.23
SCN1A-208ENST00000625916 RAET1GQ6H3X3 334 aa1.12□□□□□ -2.23
SCN1A-208ENST00000625916 FRMPD2BQ6IN97 320 aa1.12□□□□□ -2.23
SCN1A-208ENST00000625916 DPY19L4Q7Z388 723 aa1.12□□□□□ -2.23
SCN1A-208ENST00000625916 ERASQ7Z444 233 aa1.12□□□□□ -2.23
SCN1A-208ENST00000625916 PCP2Q8IVA1 136 aa1.12□□□□□ -2.23
SCN1A-208ENST00000625916 ELMOD2Q8IZ81 293 aa1.12□□□□□ -2.23
SCN1A-208ENST00000625916 FTMTQ8N4E7 242 aa1.12□□□□□ -2.23
SCN1A-208ENST00000625916 NPBQ8NG41 125 aa1.12□□□□□ -2.23
SCN1A-208ENST00000625916 OR10G3Q8NGC4 313 aa1.12□□□□□ -2.23
SCN1A-208ENST00000625916 OR9G1Q8NH87 305 aa1.12□□□□□ -2.23
SCN1A-208ENST00000625916 NANPQ8TBE9 248 aa1.12□□□□□ -2.23
SCN1A-208ENST00000625916 ACER1Q8TDN7 264 aa1.12□□□□□ -2.23
SCN1A-208ENST00000625916 MRPS31Q92665 395 aaKnown RBP1.12□□□□□ -2.23
SCN1A-208ENST00000625916 EXOSC8Q96B26 276 aaKnown RBP1.12□□□□□ -2.23
SCN1A-208ENST00000625916 C14orf79Q96F83 325 aa1.12□□□□□ -2.23
SCN1A-208ENST00000625916 TIMD4Q96H15 378 aa1.12□□□□□ -2.23
SCN1A-208ENST00000625916 TESK2Q96S53 571 aa1.12□□□□□ -2.23
SCN1A-208ENST00000625916 SLC6A7Q99884 636 aa1.12□□□□□ -2.23
SCN1A-208ENST00000625916 NAT9Q9BTE0 207 aa1.12□□□□□ -2.23
SCN1A-208ENST00000625916 POLR1EQ9GZS1 481 aaKnown RBP1.12□□□□□ -2.23
SCN1A-208ENST00000625916 SPNS1Q9H2V7 528 aa1.12□□□□□ -2.23
SCN1A-208ENST00000625916 CDC42EP4Q9H3Q1 356 aaKnown RBP1.12□□□□□ -2.23
SCN1A-208ENST00000625916 ECT2Q9H8V3 914 aa1.12□□□□□ -2.23
SCN1A-208ENST00000625916 DMAP1Q9NPF5 467 aaPredicted RBP1.12□□□□□ -2.23
SCN1A-208ENST00000625916 NUDT15Q9NV35 164 aa1.12□□□□□ -2.23
SCN1A-208ENST00000625916 SMPD3Q9NY59 655 aaPredicted RBP1.12□□□□□ -2.23
SCN1A-208ENST00000625916 ATXN10Q9UBB4 475 aa1.12□□□□□ -2.23
SCN1A-208ENST00000625916 MOSPD1Q9UJG1 213 aa1.12□□□□□ -2.23
SCN1A-208ENST00000625916 MGAT4BQ9UQ53 548 aa1.12□□□□□ -2.23
SCN1A-208ENST00000625916 CHMP2BQ9UQN3 213 aa1.12□□□□□ -2.23
SCN1A-208ENST00000625916 TRAPPC4Q9Y296 219 aa1.12□□□□□ -2.23
SCN1A-208ENST00000625916 FRMPD4Q14CM0 1322 aa1.12□□□□□ -2.23
SCN1A-208ENST00000625916 SH3TC1Q8TE82 1336 aa1.12□□□□□ -2.23
SCN1A-208ENST00000625916 IGLV11-55A0A075B6I3 123 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 IGHV1OR21-1A0A087WYE8 117 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 VSTM2BA6NLU5 285 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 IDSB3KWA1 339 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 SDHDO14521 159 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 RASGRF2O14827 1237 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 MSH4O15457 936 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 ANGPTL7O43827 346 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 OR4F21O95013 312 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 TGFAP01135 160 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 PPIAL4GP0DN37 164 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 TDGF1P13385 188 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 CXCR2P25025 360 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 GDI1P31150 447 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 SHMT2P34897 504 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 KIR2DS4P43632 304 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 VDAC2P45880 294 aaPredicted RBP1.11□□□□□ -2.23
SCN1A-208ENST00000625916 DAP3P51398 398 aaKnown RBP1.11□□□□□ -2.23
SCN1A-208ENST00000625916 TDGF1P3P51864 188 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 YBEYP58557 167 aaPredicted RBP1.11□□□□□ -2.23
SCN1A-208ENST00000625916 NUCB2P80303 420 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 ZNF763Q0D2J5 394 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 SPP2Q13103 211 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 PPP2R5CQ13362 524 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 RIPK1Q13546 671 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 UBE2SQ16763 222 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 TMEM183BQ1AE95 376 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 LRRC10Q5BKY1 277 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 DNLZQ5SXM8 178 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 NANOGP8Q6NSW7 305 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 NIPAL3Q6P499 406 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 LRRC8BQ6P9F7 803 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 TMEM183AQ8IXX5 376 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 RDH10Q8IZV5 341 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 ATP6V0D2Q8N8Y2 350 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 OR52B4Q8NGK2 314 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 DTX3LQ8TDB6 740 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 MCOLN3Q8TDD5 553 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 ZCCHC13Q8WW36 166 aaKnown RBP1.11□□□□□ -2.23
SCN1A-208ENST00000625916 FCRL1Q96LA6 429 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 SAMD8Q96LT4 415 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 TAAR1Q96RJ0 339 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 CCNL2Q96S94 520 aaPredicted RBP1.11□□□□□ -2.23
SCN1A-208ENST00000625916 NPAS2Q99743 824 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 SLC35A5Q9BS91 424 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 NXF5Q9H1B4 397 aaKnown RBP1.11□□□□□ -2.23
SCN1A-208ENST00000625916 CLMPQ9H6B4 373 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 ZNF430Q9H8G1 570 aaPredicted RBP1.11□□□□□ -2.23
SCN1A-208ENST00000625916 SIAEQ9HAT2 523 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 FOLH1BQ9HBA9 442 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 SOHLH2Q9NX45 425 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 AATFQ9NY61 560 aaKnown RBP eCLIP1.11□□□□□ -2.23
SCN1A-208ENST00000625916 ZNF226Q9NYT6 803 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 HEBP2Q9Y5Z4 205 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 NLRC5Q86WI3 1866 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 CABIN1Q9Y6J0 2220 aa1.11□□□□□ -2.23
SCN1A-208ENST00000625916 IGKV1D-8A0A087WSZ0 117 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 A0A0U1RQV5 110 aa1.1□□□□□ -2.23
SCN1A-208ENST00000625916 A0A1B0GUS0 222 aa1.1□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms