RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 SLC35A1P78382 337 aa14.39□□□□□ -0.11
LSM4-206ENST00000600289 RASGEF1BQ0VAM2 473 aa14.39□□□□□ -0.11
LSM4-206ENST00000600289 FAM91A1Q658Y4 838 aa14.39□□□□□ -0.11
LSM4-206ENST00000600289 C8orf82Q6P1X6 216 aaPredicted RBP14.39□□□□□ -0.11
LSM4-206ENST00000600289 HACD2Q6Y1H2 254 aa14.39□□□□□ -0.11
LSM4-206ENST00000600289 BEND4Q6ZU67 534 aa14.39□□□□□ -0.11
LSM4-206ENST00000600289 CPLX4Q7Z7G2 160 aa14.39□□□□□ -0.11
LSM4-206ENST00000600289 STK32CQ86UX6 486 aa14.39□□□□□ -0.11
LSM4-206ENST00000600289 TREML1Q86YW5 311 aa14.39□□□□□ -0.11
LSM4-206ENST00000600289 TUSC5Q8IXB3 177 aa14.39□□□□□ -0.11
LSM4-206ENST00000600289 PIGXQ8TBF5 258 aa14.39□□□□□ -0.11
LSM4-206ENST00000600289 STK35Q8TDR2 534 aa14.39□□□□□ -0.11
LSM4-206ENST00000600289 RASSF5Q8WWW0 418 aa14.39□□□□□ -0.11
LSM4-206ENST00000600289 ZNF583Q96ND8 569 aa14.39□□□□□ -0.11
LSM4-206ENST00000600289 DACH2Q96NX9 599 aa14.39□□□□□ -0.11
LSM4-206ENST00000600289 ARHGDIGQ99819 225 aa14.39□□□□□ -0.11
LSM4-206ENST00000600289 ECSITQ9BQ95 431 aa14.39□□□□□ -0.11
LSM4-206ENST00000600289 REPIN1Q9BWE0 567 aaKnown RBP14.39□□□□□ -0.11
LSM4-206ENST00000600289 OR10A4Q9H209 315 aa14.39□□□□□ -0.11
LSM4-206ENST00000600289 FANCFQ9NPI8 374 aa14.39□□□□□ -0.11
LSM4-206ENST00000600289 PRRC2AP48634 2157 aaKnown RBP14.39□□□□□ -0.11
LSM4-206ENST00000600289 IGHV3-15A0A0B4J1V0 119 aa14.38□□□□□ -0.11
LSM4-206ENST00000600289 ZC3H12DA2A288 527 aaKnown RBP14.38□□□□□ -0.11
LSM4-206ENST00000600289 ZNF716A6NP11 495 aa14.38□□□□□ -0.11
LSM4-206ENST00000600289 FAM220BPB1ANY3 271 aa14.38□□□□□ -0.11
LSM4-206ENST00000600289 LGI1O95970 557 aa14.38□□□□□ -0.11
LSM4-206ENST00000600289 POU2F1P14859 743 aa14.38□□□□□ -0.11
LSM4-206ENST00000600289 CCNA2P20248 432 aa14.38□□□□□ -0.11
LSM4-206ENST00000600289 HTR2AP28223 471 aa14.38□□□□□ -0.11
LSM4-206ENST00000600289 PRDX6P30041 224 aa14.38□□□□□ -0.11
LSM4-206ENST00000600289 CCKARP32238 428 aa14.38□□□□□ -0.11
LSM4-206ENST00000600289 IDUAP35475 653 aa14.38□□□□□ -0.11
LSM4-206ENST00000600289 UGT2B10P36537 528 aa14.38□□□□□ -0.11
LSM4-206ENST00000600289 KCNJ5P48544 419 aa14.38□□□□□ -0.11
LSM4-206ENST00000600289 GYS2P54840 703 aa14.38□□□□□ -0.11
LSM4-206ENST00000600289 NRF1Q16656 503 aa14.38□□□□□ -0.11
LSM4-206ENST00000600289 SWT1Q5T5J6 900 aaKnown RBP14.38□□□□□ -0.11
LSM4-206ENST00000600289 PAQR6Q6TCH4 344 aa14.38□□□□□ -0.11
LSM4-206ENST00000600289 C5orf46Q6UWT4 87 aa14.38□□□□□ -0.11
LSM4-206ENST00000600289 TFAP2EQ6VUC0 442 aa14.38□□□□□ -0.11
LSM4-206ENST00000600289 PIGWQ7Z7B1 504 aa14.38□□□□□ -0.11
LSM4-206ENST00000600289 POU5F2Q8N7G0 328 aa14.38□□□□□ -0.11
LSM4-206ENST00000600289 DNAJA4Q8WW22 397 aaPredicted RBP14.38□□□□□ -0.11
LSM4-206ENST00000600289 EMC3Q9P0I2 261 aa14.38□□□□□ -0.11
LSM4-206ENST00000600289 SLC13A4Q9UKG4 626 aa14.38□□□□□ -0.11
LSM4-206ENST00000600289 TESMINQ9Y4I5 508 aa14.38□□□□□ -0.11
LSM4-206ENST00000600289 FREM1Q5H8C1 2179 aa14.38□□□□□ -0.11
LSM4-206ENST00000600289 RTTNQ86VV8 2226 aa14.38□□□□□ -0.11
LSM4-206ENST00000600289 SH3D21A4FU49 640 aa14.37□□□□□ -0.11
LSM4-206ENST00000600289 LIPT2A6NK58 231 aa14.37□□□□□ -0.11
LSM4-206ENST00000600289 M0QX08 132 aa14.37□□□□□ -0.11
LSM4-206ENST00000600289 GPIP06744 558 aa14.37□□□□□ -0.11
LSM4-206ENST00000600289 PNMTP11086 282 aa14.37□□□□□ -0.11
LSM4-206ENST00000600289 KLK2P20151 261 aa14.37□□□□□ -0.11
LSM4-206ENST00000600289 CD247P20963 164 aa14.37□□□□□ -0.11
LSM4-206ENST00000600289 OR3A2P47893 321 aa14.37□□□□□ -0.11
LSM4-206ENST00000600289 ART1P52961 327 aa14.37□□□□□ -0.11
LSM4-206ENST00000600289 CRYBA2P53672 197 aa14.37□□□□□ -0.11
LSM4-206ENST00000600289 RGS8P57771 180 aaPredicted RBP14.37□□□□□ -0.11
LSM4-206ENST00000600289 OR2B6P58173 313 aa14.37□□□□□ -0.11
LSM4-206ENST00000600289 FAM27E3Q08E93 113 aa14.37□□□□□ -0.11
LSM4-206ENST00000600289 SNTB1Q13884 538 aaKnown RBP14.37□□□□□ -0.11
LSM4-206ENST00000600289 DUSP7Q16829 419 aa14.37□□□□□ -0.11
LSM4-206ENST00000600289 ULK3Q6PHR2 472 aa14.37□□□□□ -0.11
LSM4-206ENST00000600289 NUFIP2Q7Z417 695 aaKnown RBP14.37□□□□□ -0.11
LSM4-206ENST00000600289 RANBP3LQ86VV4 465 aaPredicted RBP14.37□□□□□ -0.11
LSM4-206ENST00000600289 GPR32P1Q8NGA4 272 aa14.37□□□□□ -0.11
LSM4-206ENST00000600289 OR52E4Q8NGH9 312 aa14.37□□□□□ -0.11
LSM4-206ENST00000600289 TAMM41Q96BW9 452 aa14.37□□□□□ -0.11
LSM4-206ENST00000600289 CMTM5Q96DZ9 223 aa14.37□□□□□ -0.11
LSM4-206ENST00000600289 HOPXQ9BPY8 73 aaPredicted RBP14.37□□□□□ -0.11
LSM4-206ENST00000600289 NAA11Q9BSU3 229 aaPredicted RBP14.37□□□□□ -0.11
LSM4-206ENST00000600289 FAM107BQ9H098 131 aa14.37□□□□□ -0.11
LSM4-206ENST00000600289 PIF1Q9H611 641 aa14.37□□□□□ -0.11
LSM4-206ENST00000600289 EFCAB1Q9HAE3 211 aa14.37□□□□□ -0.11
LSM4-206ENST00000600289 RPS6KB2Q9UBS0 482 aa14.37□□□□□ -0.11
LSM4-206ENST00000600289 NDRG3Q9UGV2 375 aa14.37□□□□□ -0.11
LSM4-206ENST00000600289 FLNAP21333 2647 aaKnown RBP14.37□□□□□ -0.11
LSM4-206ENST00000600289 A0A0B4J2E0 115 aa14.36□□□□□ -0.11
LSM4-206ENST00000600289 A0A1B0GWA3 101 aa14.36□□□□□ -0.11
LSM4-206ENST00000600289 A0A1B0GX12 115 aa14.36□□□□□ -0.11
LSM4-206ENST00000600289 A6NNC1 897 aa14.36□□□□□ -0.11
LSM4-206ENST00000600289 C16orf97H3BN30 126 aa14.36□□□□□ -0.11
LSM4-206ENST00000600289 GPR171O14626 319 aa14.36□□□□□ -0.11
LSM4-206ENST00000600289 CTAG2O75638 210 aa14.36□□□□□ -0.11
LSM4-206ENST00000600289 CNOT4O95628 575 aaKnown RBP14.36□□□□□ -0.11
LSM4-206ENST00000600289 PPP3CBP16298 524 aa14.36□□□□□ -0.11
LSM4-206ENST00000600289 PSMB1P20618 241 aaKnown RBP14.36□□□□□ -0.11
LSM4-206ENST00000600289 NCALDP61601 193 aa14.36□□□□□ -0.11
LSM4-206ENST00000600289 HOXC5Q00444 222 aa14.36□□□□□ -0.11
LSM4-206ENST00000600289 C1orf140Q5VVS0 124 aa14.36□□□□□ -0.11
LSM4-206ENST00000600289 GALNT5Q7Z7M9 940 aa14.36□□□□□ -0.11
LSM4-206ENST00000600289 GABRG1Q8N1C3 465 aa14.36□□□□□ -0.11
LSM4-206ENST00000600289 SMYD1Q8NB12 490 aa14.36□□□□□ -0.11
LSM4-206ENST00000600289 LINC01560Q8TB33 94 aa14.36□□□□□ -0.11
LSM4-206ENST00000600289 SLC38A4Q969I6 547 aa14.36□□□□□ -0.11
LSM4-206ENST00000600289 ZNF300Q96RE9 604 aaPredicted RBP14.36□□□□□ -0.11
LSM4-206ENST00000600289 MDFIQ99750 246 aa14.36□□□□□ -0.11
LSM4-206ENST00000600289 PCDHAC1Q9H158 963 aa14.36□□□□□ -0.11
LSM4-206ENST00000600289 GSX1Q9H4S2 264 aaPredicted RBP14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms