RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 EPHA1P21709 976 aa11.02□□□□□ -0.65
SS18-219ENST00000581570 PGM1P36871 562 aa11.02□□□□□ -0.65
SS18-219ENST00000581570 HPCAL1P37235 193 aa11.02□□□□□ -0.65
SS18-219ENST00000581570 HGFACQ04756 655 aa11.02□□□□□ -0.65
SS18-219ENST00000581570 LSM12Q3MHD2 195 aaKnown RBP11.02□□□□□ -0.65
SS18-219ENST00000581570 C3orf36Q3SXR2 165 aa11.02□□□□□ -0.65
SS18-219ENST00000581570 FAHD2BQ6P2I3 314 aaPredicted RBP11.02□□□□□ -0.65
SS18-219ENST00000581570 SHISA2Q6UWI4 295 aa11.02□□□□□ -0.65
SS18-219ENST00000581570 OLIG3Q7RTU3 272 aa11.02□□□□□ -0.65
SS18-219ENST00000581570 OR1K1Q8NGR3 316 aa11.02□□□□□ -0.65
SS18-219ENST00000581570 CLDND2Q8NHS1 167 aa11.02□□□□□ -0.65
SS18-219ENST00000581570 PSMA8Q8TAA3 256 aa11.02□□□□□ -0.65
SS18-219ENST00000581570 SFXN5Q8TD22 340 aa11.02□□□□□ -0.65
SS18-219ENST00000581570 CKAP2Q8WWK9 683 aa11.02□□□□□ -0.65
SS18-219ENST00000581570 MOAP1Q96BY2 351 aa11.02□□□□□ -0.65
SS18-219ENST00000581570 FAHD2AQ96GK7 314 aa11.02□□□□□ -0.65
SS18-219ENST00000581570 ANKRD27Q96NW4 1050 aa11.02□□□□□ -0.65
SS18-219ENST00000581570 ZNF747Q9BV97 191 aa11.02□□□□□ -0.65
SS18-219ENST00000581570 NARFLQ9H6Q4 476 aa11.02□□□□□ -0.65
SS18-219ENST00000581570 CRNNQ9UBG3 495 aaPredicted RBP11.02□□□□□ -0.65
SS18-219ENST00000581570 TMED5Q9Y3A6 229 aa11.02□□□□□ -0.65
SS18-219ENST00000581570 A0A0G2JK05 382 aa11.01□□□□□ -0.65
SS18-219ENST00000581570 EXOC1LA0A1B0GW35 172 aa11.01□□□□□ -0.65
SS18-219ENST00000581570 DUXAA6NLW8 204 aa11.01□□□□□ -0.65
SS18-219ENST00000581570 NR5A2O00482 541 aa11.01□□□□□ -0.65
SS18-219ENST00000581570 AK1P00568 194 aa11.01□□□□□ -0.65
SS18-219ENST00000581570 IGLV1-44P01699 117 aa11.01□□□□□ -0.65
SS18-219ENST00000581570 LINC00032P0C843 101 aa11.01□□□□□ -0.65
SS18-219ENST00000581570 NEFHP12036 1026 aa11.01□□□□□ -0.65
SS18-219ENST00000581570 BCKDHAP12694 445 aa11.01□□□□□ -0.65
SS18-219ENST00000581570 MATN1P21941 496 aa11.01□□□□□ -0.65
SS18-219ENST00000581570 RPL3P39023 403 aaKnown RBP11.01□□□□□ -0.65
SS18-219ENST00000581570 GPR6P46095 362 aaPredicted RBP11.01□□□□□ -0.65
SS18-219ENST00000581570 TUBA1BP68363 451 aa11.01□□□□□ -0.65
SS18-219ENST00000581570 TUBA4AP68366 448 aa11.01□□□□□ -0.65
SS18-219ENST00000581570 MAPK14Q16539 360 aa11.01□□□□□ -0.65
SS18-219ENST00000581570 GALNTL6Q49A17 601 aa11.01□□□□□ -0.65
SS18-219ENST00000581570 LIPMQ5VYY2 423 aa11.01□□□□□ -0.65
SS18-219ENST00000581570 ZYG11AQ6WRX3 759 aa11.01□□□□□ -0.65
SS18-219ENST00000581570 TUBA1AQ71U36 451 aa11.01□□□□□ -0.65
SS18-219ENST00000581570 CDK20Q8IZL9 346 aa11.01□□□□□ -0.65
SS18-219ENST00000581570 TEX29Q8N6K0 151 aa11.01□□□□□ -0.65
SS18-219ENST00000581570 ZIC4Q8N9L1 334 aa11.01□□□□□ -0.65
SS18-219ENST00000581570 OR5AK3PQ8NH89 298 aa11.01□□□□□ -0.65
SS18-219ENST00000581570 BCL2L2Q92843 193 aaPredicted RBP11.01□□□□□ -0.65
SS18-219ENST00000581570 PMM1Q92871 262 aa11.01□□□□□ -0.65
SS18-219ENST00000581570 DDIT4LQ96D03 193 aa11.01□□□□□ -0.65
SS18-219ENST00000581570 ZNF385AQ96PM9 386 aaKnown RBP11.01□□□□□ -0.65
SS18-219ENST00000581570 SUCNR1Q9BXA5 334 aa11.01□□□□□ -0.65
SS18-219ENST00000581570 TSPYL1Q9H0U9 437 aa11.01□□□□□ -0.65
SS18-219ENST00000581570 TPK1Q9H3S4 243 aa11.01□□□□□ -0.65
SS18-219ENST00000581570 SEC61A2Q9H9S3 476 aa11.01□□□□□ -0.65
SS18-219ENST00000581570 PCDHGB4Q9UN71 923 aa11.01□□□□□ -0.65
SS18-219ENST00000581570 SLC35A3Q9Y2D2 325 aa11.01□□□□□ -0.65
SS18-219ENST00000581570 FIS1Q9Y3D6 152 aa11.01□□□□□ -0.65
SS18-219ENST00000581570 A0A096LPE4 126 aa11□□□□□ -0.65
SS18-219ENST00000581570 TMED7-TICAM2A0A0A6YYA0 188 aa11□□□□□ -0.65
SS18-219ENST00000581570 ARPC4-TTLL3A0A0A6YYG9 625 aa11□□□□□ -0.65
SS18-219ENST00000581570 A0A1W2PPZ6 126 aa11□□□□□ -0.65
SS18-219ENST00000581570 ZNF587BE7ETH6 402 aa11□□□□□ -0.65
SS18-219ENST00000581570 LSM1O15116 133 aaKnown RBP11□□□□□ -0.65
SS18-219ENST00000581570 CFLARO15519 480 aa11□□□□□ -0.65
SS18-219ENST00000581570 BCAS1O75363 584 aaPredicted RBP11□□□□□ -0.65
SS18-219ENST00000581570 TFP02787 698 aa11□□□□□ -0.65
SS18-219ENST00000581570 SAGP10523 405 aaPredicted RBP11□□□□□ -0.65
SS18-219ENST00000581570 GCAP28676 217 aa11□□□□□ -0.65
SS18-219ENST00000581570 HTR3AP46098 478 aa11□□□□□ -0.65
SS18-219ENST00000581570 IDH2P48735 452 aaKnown RBP11□□□□□ -0.65
SS18-219ENST00000581570 DNAJB13P59910 316 aa11□□□□□ -0.65
SS18-219ENST00000581570 RPS26P62854 115 aaKnown RBP11□□□□□ -0.65
SS18-219ENST00000581570 PDCD2Q16342 344 aaPredicted RBP11□□□□□ -0.65
SS18-219ENST00000581570 ARHGAP11BQ3KRB8 267 aa11□□□□□ -0.65
SS18-219ENST00000581570 OTUD3Q5T2D3 398 aaPredicted RBP11□□□□□ -0.65
SS18-219ENST00000581570 C8orf74Q6P047 294 aa11□□□□□ -0.65
SS18-219ENST00000581570 EMBQ6PCB8 327 aa11□□□□□ -0.65
SS18-219ENST00000581570 PAQR6Q6TCH4 344 aa11□□□□□ -0.65
SS18-219ENST00000581570 CARM1Q86X55 608 aa11□□□□□ -0.65
SS18-219ENST00000581570 NATD1Q8N6N6 113 aa11□□□□□ -0.65
SS18-219ENST00000581570 FAM169BQ8N8A8 192 aa11□□□□□ -0.65
SS18-219ENST00000581570 FAM71CQ8NEG0 241 aa11□□□□□ -0.65
SS18-219ENST00000581570 OR9K2Q8NGE7 335 aa11□□□□□ -0.65
SS18-219ENST00000581570 OR51F2Q8NH61 342 aa11□□□□□ -0.65
SS18-219ENST00000581570 MAGEE2Q8TD90 523 aaPredicted RBP11□□□□□ -0.65
SS18-219ENST00000581570 ACMSDQ8TDX5 336 aa11□□□□□ -0.65
SS18-219ENST00000581570 KCTD12Q96CX2 325 aaKnown RBP11□□□□□ -0.65
SS18-219ENST00000581570 SF3B5Q9BWJ5 86 aaKnown RBP11□□□□□ -0.65
SS18-219ENST00000581570 ZNF350Q9GZX5 532 aa11□□□□□ -0.65
SS18-219ENST00000581570 TUBB1Q9H4B7 451 aa11□□□□□ -0.65
SS18-219ENST00000581570 MOV10Q9HCE1 1003 aaKnown RBP11□□□□□ -0.65
SS18-219ENST00000581570 ATAD3AQ9NVI7 634 aa11□□□□□ -0.65
SS18-219ENST00000581570 TREM2Q9NZC2 230 aa11□□□□□ -0.65
SS18-219ENST00000581570 DCDC2Q9UHG0 476 aa11□□□□□ -0.65
SS18-219ENST00000581570 EMCNQ9ULC0 261 aa11□□□□□ -0.65
SS18-219ENST00000581570 TMED7Q9Y3B3 224 aa11□□□□□ -0.65
SS18-219ENST00000581570 LOC105371242A0A075B767 164 aa10.99□□□□□ -0.65
SS18-219ENST00000581570 TRAV20A0A0B4J274 112 aa10.99□□□□□ -0.65
SS18-219ENST00000581570 TMEM72A0PK05 275 aa10.99□□□□□ -0.65
SS18-219ENST00000581570 OR6C65A6NJZ3 312 aa10.99□□□□□ -0.65
SS18-219ENST00000581570 TMEM114B3SHH9 223 aa10.99□□□□□ -0.65
SS18-219ENST00000581570 AZIN1O14977 448 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms