RNA–Protein interactions for RNA: ENST00000568477.5

CMTM3-215, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

TSL 3 BASIC

Gene CMTM3, Length 687 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-215ENST00000568477 PCDHB14Q9Y5E9 798 aa12.79□□□□□ -0.36
CMTM3-215ENST00000568477 NF1P21359 2839 aa12.78□□□□□ -0.36
CMTM3-215ENST00000568477 ZNF716A6NP11 495 aa12.78□□□□□ -0.36
CMTM3-215ENST00000568477 CLIC1O00299 241 aa12.78□□□□□ -0.36
CMTM3-215ENST00000568477 NR5A2O00482 541 aa12.78□□□□□ -0.36
CMTM3-215ENST00000568477 EIF1BO60739 113 aaKnown RBP12.78□□□□□ -0.36
CMTM3-215ENST00000568477 LYZL6O75951 148 aa12.78□□□□□ -0.36
CMTM3-215ENST00000568477 CNOT4O95628 575 aaKnown RBP12.78□□□□□ -0.36
CMTM3-215ENST00000568477 THBS1P07996 1170 aa12.78□□□□□ -0.36
CMTM3-215ENST00000568477 GKN3PP0CG01 181 aa12.78□□□□□ -0.36
CMTM3-215ENST00000568477 T-ENOLP0DO92 83 aa12.78□□□□□ -0.36
CMTM3-215ENST00000568477 FOSL1P15407 271 aa12.78□□□□□ -0.36
CMTM3-215ENST00000568477 SLC16A1P53985 500 aa12.78□□□□□ -0.36
CMTM3-215ENST00000568477 COPZ1P61923 177 aa12.78□□□□□ -0.36
CMTM3-215ENST00000568477 SLC35A1P78382 337 aa12.78□□□□□ -0.36
CMTM3-215ENST00000568477 FADDQ13158 208 aa12.78□□□□□ -0.36
CMTM3-215ENST00000568477 CAPRIN1Q14444 709 aaKnown RBP12.78□□□□□ -0.36
CMTM3-215ENST00000568477 RGNQ15493 299 aa12.78□□□□□ -0.36
CMTM3-215ENST00000568477 PRAMEF8Q5VWM4 474 aa12.78□□□□□ -0.36
CMTM3-215ENST00000568477 PRAMEF7Q5VXH5 474 aa12.78□□□□□ -0.36
CMTM3-215ENST00000568477 BLOC1S3Q6QNY0 202 aa12.78□□□□□ -0.36
CMTM3-215ENST00000568477 ASRGL1Q7L266 308 aa12.78□□□□□ -0.36
CMTM3-215ENST00000568477 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.78□□□□□ -0.36
CMTM3-215ENST00000568477 KRTAP1-3Q8IUG1 177 aa12.78□□□□□ -0.36
CMTM3-215ENST00000568477 APH1AQ96BI3 265 aa12.78□□□□□ -0.36
CMTM3-215ENST00000568477 SPDL1Q96EA4 605 aa12.78□□□□□ -0.36
CMTM3-215ENST00000568477 ARMC7Q9H6L4 198 aa12.78□□□□□ -0.36
CMTM3-215ENST00000568477 A4GALTQ9NPC4 353 aa12.78□□□□□ -0.36
CMTM3-215ENST00000568477 DLL4Q9NR61 685 aa12.78□□□□□ -0.36
CMTM3-215ENST00000568477 TRIM33Q9UPN9 1127 aa12.78□□□□□ -0.36
CMTM3-215ENST00000568477 CADP27708 2225 aa12.78□□□□□ -0.36
CMTM3-215ENST00000568477 USF3Q68DE3 2245 aa12.77□□□□□ -0.36
CMTM3-215ENST00000568477 HS3ST1O14792 307 aa12.77□□□□□ -0.37
CMTM3-215ENST00000568477 PLAUP00749 431 aa12.77□□□□□ -0.37
CMTM3-215ENST00000568477 NUDT7P0C024 238 aa12.77□□□□□ -0.37
CMTM3-215ENST00000568477 BMP2P12643 396 aa12.77□□□□□ -0.37
CMTM3-215ENST00000568477 HOXB9P17482 250 aaPredicted RBP12.77□□□□□ -0.37
CMTM3-215ENST00000568477 COX5AP20674 150 aa12.77□□□□□ -0.37
CMTM3-215ENST00000568477 CALB2P22676 271 aa12.77□□□□□ -0.37
CMTM3-215ENST00000568477 CXCR1P25024 350 aa12.77□□□□□ -0.37
CMTM3-215ENST00000568477 EDNRAP25101 427 aa12.77□□□□□ -0.37
CMTM3-215ENST00000568477 ACAA2P42765 397 aaKnown RBP12.77□□□□□ -0.37
CMTM3-215ENST00000568477 STK11Q15831 433 aa12.77□□□□□ -0.37
CMTM3-215ENST00000568477 Q5PR19 223 aa12.77□□□□□ -0.37
CMTM3-215ENST00000568477 WBP2NLQ6ICG8 309 aa12.77□□□□□ -0.37
CMTM3-215ENST00000568477 FUNDC1Q8IVP5 155 aa12.77□□□□□ -0.37
CMTM3-215ENST00000568477 UBE2J2Q8N2K1 259 aa12.77□□□□□ -0.37
CMTM3-215ENST00000568477 CADM2Q8N3J6 435 aa12.77□□□□□ -0.37
CMTM3-215ENST00000568477 NAA11Q9BSU3 229 aaPredicted RBP12.77□□□□□ -0.37
CMTM3-215ENST00000568477 SPATA9Q9BWV2 254 aa12.77□□□□□ -0.37
CMTM3-215ENST00000568477 ADAM19Q9H013 955 aa12.77□□□□□ -0.37
CMTM3-215ENST00000568477 LRMDAQ9H2I8 198 aa12.77□□□□□ -0.37
CMTM3-215ENST00000568477 ESRP2Q9H6T0 727 aaKnown RBP12.77□□□□□ -0.37
CMTM3-215ENST00000568477 MRGBPQ9NV56 204 aa12.77□□□□□ -0.37
CMTM3-215ENST00000568477 ARL8BQ9NVJ2 186 aa12.77□□□□□ -0.37
CMTM3-215ENST00000568477 IFT52Q9Y366 437 aa12.77□□□□□ -0.37
CMTM3-215ENST00000568477 RNF115Q9Y4L5 304 aa12.77□□□□□ -0.37
CMTM3-215ENST00000568477 CAPN7Q9Y6W3 813 aa12.77□□□□□ -0.37
CMTM3-215ENST00000568477 RAI1Q7Z5J4 1906 aaPredicted RBP12.77□□□□□ -0.37
CMTM3-215ENST00000568477 ZFHX3Q15911 3703 aa12.76□□□□□ -0.37
CMTM3-215ENST00000568477 ZC3H12DA2A288 527 aaKnown RBP12.76□□□□□ -0.37
CMTM3-215ENST00000568477 C5orf58C9J3I9 102 aa12.76□□□□□ -0.37
CMTM3-215ENST00000568477 SLC22A2O15244 555 aa12.76□□□□□ -0.37
CMTM3-215ENST00000568477 RAMP1O60894 148 aa12.76□□□□□ -0.37
CMTM3-215ENST00000568477 MRPL33O75394 65 aaKnown RBP12.76□□□□□ -0.37
CMTM3-215ENST00000568477 IGHV3-9P01782 118 aa12.76□□□□□ -0.37
CMTM3-215ENST00000568477 CD3EP07766 207 aa12.76□□□□□ -0.37
CMTM3-215ENST00000568477 IMPDH2P12268 514 aa12.76□□□□□ -0.37
CMTM3-215ENST00000568477 GGT1P19440 569 aa12.76□□□□□ -0.37
CMTM3-215ENST00000568477 NCF2P19878 526 aaPredicted RBP12.76□□□□□ -0.37
CMTM3-215ENST00000568477 IGHV1-2P23083 117 aa12.76□□□□□ -0.37
CMTM3-215ENST00000568477 PPIBP23284 216 aaKnown RBP12.76□□□□□ -0.37
CMTM3-215ENST00000568477 ADSLP30566 484 aaPredicted RBP12.76□□□□□ -0.37
CMTM3-215ENST00000568477 IDUAP35475 653 aa12.76□□□□□ -0.37
CMTM3-215ENST00000568477 ATP4BP51164 291 aa12.76□□□□□ -0.37
CMTM3-215ENST00000568477 IRX1P78414 480 aaPredicted RBP12.76□□□□□ -0.37
CMTM3-215ENST00000568477 H3F3AP84243 136 aa12.76□□□□□ -0.37
CMTM3-215ENST00000568477 ZNF311Q5JNZ3 666 aa12.76□□□□□ -0.37
CMTM3-215ENST00000568477 NCMAPQ5T1S8 102 aa12.76□□□□□ -0.37
CMTM3-215ENST00000568477 LRIF1Q5T3J3 769 aa12.76□□□□□ -0.37
CMTM3-215ENST00000568477 FBXW9Q5XUX1 488 aa12.76□□□□□ -0.37
CMTM3-215ENST00000568477 SSX8Q7RTT4 187 aa12.76□□□□□ -0.37
CMTM3-215ENST00000568477 CCDC103Q8IW40 242 aa12.76□□□□□ -0.37
CMTM3-215ENST00000568477 CLIP4Q8N3C7 705 aa12.76□□□□□ -0.37
CMTM3-215ENST00000568477 ZNF611Q8N823 705 aa12.76□□□□□ -0.37
CMTM3-215ENST00000568477 BBS10Q8TAM1 723 aa12.76□□□□□ -0.37
CMTM3-215ENST00000568477 TMEM171Q8WVE6 324 aa12.76□□□□□ -0.37
CMTM3-215ENST00000568477 AKAP1Q92667 903 aaKnown RBP eCLIP12.76□□□□□ -0.377e-7■■■■□ 23.2
CMTM3-215ENST00000568477 MAL2Q969L2 176 aa12.76□□□□□ -0.37
CMTM3-215ENST00000568477 MUCL1Q96DR8 90 aa12.76□□□□□ -0.37
CMTM3-215ENST00000568477 PERPQ96FX8 193 aa12.76□□□□□ -0.37
CMTM3-215ENST00000568477 BCL2L10Q9HD36 194 aa12.76□□□□□ -0.37
CMTM3-215ENST00000568477 TMEM45AQ9NWC5 275 aa12.76□□□□□ -0.37
CMTM3-215ENST00000568477 SLC25A37Q9NYZ2 338 aa12.76□□□□□ -0.37
CMTM3-215ENST00000568477 CCDC167Q9P0B6 97 aa12.76□□□□□ -0.37
CMTM3-215ENST00000568477 SLC9A8Q9Y2E8 581 aa12.76□□□□□ -0.37
CMTM3-215ENST00000568477 CLOCKO15516 846 aa12.75□□□□□ -0.37
CMTM3-215ENST00000568477 TMCC2O75069 709 aa12.75□□□□□ -0.37
CMTM3-215ENST00000568477 GPIP06744 558 aa12.75□□□□□ -0.37
CMTM3-215ENST00000568477 PRG2P13727 222 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms