RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 C10orf111Q8N326 155 aa9.54□□□□□ -0.88
VPS39-208ENST00000564994 TMEM99Q8N816 258 aa9.54□□□□□ -0.88
VPS39-208ENST00000564994 OR52E4Q8NGH9 312 aa9.54□□□□□ -0.88
VPS39-208ENST00000564994 MAL2Q969L2 176 aa9.54□□□□□ -0.88
VPS39-208ENST00000564994 DDIT4LQ96D03 193 aa9.54□□□□□ -0.88
VPS39-208ENST00000564994 TRIM2Q9C040 744 aa9.54□□□□□ -0.88
VPS39-208ENST00000564994 SLC52A3Q9NQ40 469 aa9.54□□□□□ -0.88
VPS39-208ENST00000564994 SLC25A37Q9NYZ2 338 aa9.54□□□□□ -0.88
VPS39-208ENST00000564994 SLAMF8Q9P0V8 285 aa9.54□□□□□ -0.88
VPS39-208ENST00000564994 MALT1Q9UDY8 824 aa9.54□□□□□ -0.88
VPS39-208ENST00000564994 FLVCR1Q9Y5Y0 555 aa9.54□□□□□ -0.88
VPS39-208ENST00000564994 CR1P17927 2039 aa9.54□□□□□ -0.88
VPS39-208ENST00000564994 SONP18583 2426 aaKnown RBP9.53□□□□□ -0.88
VPS39-208ENST00000564994 HIVEP2P31629 2446 aa9.53□□□□□ -0.88
VPS39-208ENST00000564994 A0A0G2JPF8 293 aa9.53□□□□□ -0.88
VPS39-208ENST00000564994 A0A1W2PR80 420 aa9.53□□□□□ -0.88
VPS39-208ENST00000564994 HNRNPCL2B2RXH8 293 aa9.53□□□□□ -0.88
VPS39-208ENST00000564994 SHISA9B4DS77 424 aa9.53□□□□□ -0.88
VPS39-208ENST00000564994 HNRNPCL3B7ZW38 293 aa9.53□□□□□ -0.88
VPS39-208ENST00000564994 OVOL3O00110 214 aa9.53□□□□□ -0.88
VPS39-208ENST00000564994 PDLIM1O00151 329 aa9.53□□□□□ -0.88
VPS39-208ENST00000564994 CLIC1O00299 241 aa9.53□□□□□ -0.88
VPS39-208ENST00000564994 SMAD7O15105 426 aaKnown RBP9.53□□□□□ -0.88
VPS39-208ENST00000564994 HNRNPCL1O60812 293 aaKnown RBP9.53□□□□□ -0.88
VPS39-208ENST00000564994 TMCC2O75069 709 aa9.53□□□□□ -0.88
VPS39-208ENST00000564994 MRPL33O75394 65 aaKnown RBP9.53□□□□□ -0.88
VPS39-208ENST00000564994 TGDSO95455 350 aa9.53□□□□□ -0.88
VPS39-208ENST00000564994 HEXAP06865 529 aa9.53□□□□□ -0.88
VPS39-208ENST00000564994 THBS1P07996 1170 aa9.53□□□□□ -0.88
VPS39-208ENST00000564994 ITGA5P08648 1049 aa9.53□□□□□ -0.88
VPS39-208ENST00000564994 HNRNPCL4P0DMR1 293 aa9.53□□□□□ -0.88
VPS39-208ENST00000564994 BMP2P12643 396 aa9.53□□□□□ -0.88
VPS39-208ENST00000564994 UQCRBP14927 111 aa9.53□□□□□ -0.88
VPS39-208ENST00000564994 IDUAP35475 653 aa9.53□□□□□ -0.88
VPS39-208ENST00000564994 MAP2K6P52564 334 aa9.53□□□□□ -0.88
VPS39-208ENST00000564994 RPS4XP62701 263 aaKnown RBP9.53□□□□□ -0.88
VPS39-208ENST00000564994 FAPQ12884 760 aa9.53□□□□□ -0.88
VPS39-208ENST00000564994 CEACAM7Q14002 265 aa9.53□□□□□ -0.88
VPS39-208ENST00000564994 RGNQ15493 299 aa9.53□□□□□ -0.88
VPS39-208ENST00000564994 PGGHGQ32M88 737 aa9.53□□□□□ -0.88
VPS39-208ENST00000564994 PAQR6Q6TCH4 344 aa9.53□□□□□ -0.88
VPS39-208ENST00000564994 SERPINA11Q86U17 422 aa9.53□□□□□ -0.88
VPS39-208ENST00000564994 P2RY8Q86VZ1 359 aa9.53□□□□□ -0.88
VPS39-208ENST00000564994 UBE2J2Q8N2K1 259 aa9.53□□□□□ -0.88
VPS39-208ENST00000564994 CADM2Q8N3J6 435 aa9.53□□□□□ -0.88
VPS39-208ENST00000564994 ZIC4Q8N9L1 334 aa9.53□□□□□ -0.88
VPS39-208ENST00000564994 LRRC8CQ8TDW0 803 aa9.53□□□□□ -0.88
VPS39-208ENST00000564994 SMAP2Q8WU79 429 aaPredicted RBP9.53□□□□□ -0.88
VPS39-208ENST00000564994 FBXW5Q969U6 566 aa9.53□□□□□ -0.88
VPS39-208ENST00000564994 ATP6V1G3Q96LB4 118 aa9.53□□□□□ -0.88
VPS39-208ENST00000564994 NAA11Q9BSU3 229 aaPredicted RBP9.53□□□□□ -0.88
VPS39-208ENST00000564994 BDH2Q9BUT1 245 aa9.53□□□□□ -0.88
VPS39-208ENST00000564994 SPATA9Q9BWV2 254 aa9.53□□□□□ -0.88
VPS39-208ENST00000564994 CXorf56Q9H5V9 222 aa9.53□□□□□ -0.88
VPS39-208ENST00000564994 TCF7L2Q9NQB0 619 aa9.53□□□□□ -0.88
VPS39-208ENST00000564994 ASB6Q9NWX5 421 aa9.53□□□□□ -0.88
VPS39-208ENST00000564994 CALML5Q9NZT1 146 aa9.53□□□□□ -0.88
VPS39-208ENST00000564994 MAGED1Q9Y5V3 778 aaPredicted RBP9.53□□□□□ -0.88
VPS39-208ENST00000564994 SLC25A15Q9Y619 301 aa9.53□□□□□ -0.88
VPS39-208ENST00000564994 A0A096LPI6 279 aa9.52□□□□□ -0.89
VPS39-208ENST00000564994 CIB4A0PJX0 185 aa9.52□□□□□ -0.89
VPS39-208ENST00000564994 LIPT2A6NK58 231 aa9.52□□□□□ -0.89
VPS39-208ENST00000564994 ABCD4O14678 606 aa9.52□□□□□ -0.89
VPS39-208ENST00000564994 POLR3GO15318 223 aaPredicted RBP9.52□□□□□ -0.89
VPS39-208ENST00000564994 FRS3O43559 492 aa9.52□□□□□ -0.89
VPS39-208ENST00000564994 EIF1BO60739 113 aaKnown RBP9.52□□□□□ -0.89
VPS39-208ENST00000564994 AKR7A3O95154 331 aa9.52□□□□□ -0.89
VPS39-208ENST00000564994 CD8AP01732 235 aa9.52□□□□□ -0.89
VPS39-208ENST00000564994 CXCR1P25024 350 aa9.52□□□□□ -0.89
VPS39-208ENST00000564994 CDKN1AP38936 164 aa9.52□□□□□ -0.89
VPS39-208ENST00000564994 P2RY4P51582 365 aa9.52□□□□□ -0.89
VPS39-208ENST00000564994 AQP5P55064 265 aa9.52□□□□□ -0.89
VPS39-208ENST00000564994 ATP5J2P56134 94 aa9.52□□□□□ -0.89
VPS39-208ENST00000564994 HOXC5Q00444 222 aa9.52□□□□□ -0.89
VPS39-208ENST00000564994 LARS2Q15031 903 aaKnown RBP9.52□□□□□ -0.89
VPS39-208ENST00000564994 OR7A5Q15622 319 aa9.52□□□□□ -0.89
VPS39-208ENST00000564994 GABRA6Q16445 453 aa9.52□□□□□ -0.89
VPS39-208ENST00000564994 PAGE3Q5JUK9 113 aa9.52□□□□□ -0.89
VPS39-208ENST00000564994 OTUD3Q5T2D3 398 aaPredicted RBP9.52□□□□□ -0.89
VPS39-208ENST00000564994 LRIF1Q5T3J3 769 aa9.52□□□□□ -0.89
VPS39-208ENST00000564994 TSPO2Q5TGU0 170 aa9.52□□□□□ -0.89
VPS39-208ENST00000564994 C9orf135Q5VTT2 229 aa9.52□□□□□ -0.89
VPS39-208ENST00000564994 WBP2NLQ6ICG8 309 aa9.52□□□□□ -0.89
VPS39-208ENST00000564994 BLOC1S3Q6QNY0 202 aa9.52□□□□□ -0.89
VPS39-208ENST00000564994 CASP12Q6UXS9 341 aa9.52□□□□□ -0.89
VPS39-208ENST00000564994 OR52N5Q8NH56 324 aa9.52□□□□□ -0.89
VPS39-208ENST00000564994 C3orf49Q96BT1 292 aa9.52□□□□□ -0.89
VPS39-208ENST00000564994 MUCL1Q96DR8 90 aa9.52□□□□□ -0.89
VPS39-208ENST00000564994 MUS81Q96NY9 551 aa9.52□□□□□ -0.89
VPS39-208ENST00000564994 ZNF385AQ96PM9 386 aaKnown RBP9.52□□□□□ -0.89
VPS39-208ENST00000564994 CCDC28BQ9BUN5 200 aa9.52□□□□□ -0.89
VPS39-208ENST00000564994 BCL2L10Q9HD36 194 aa9.52□□□□□ -0.89
VPS39-208ENST00000564994 A4GALTQ9NPC4 353 aa9.52□□□□□ -0.89
VPS39-208ENST00000564994 SLC7A10Q9NS82 523 aa9.52□□□□□ -0.89
VPS39-208ENST00000564994 THUMPD1Q9NXG2 353 aaKnown RBP9.52□□□□□ -0.89
VPS39-208ENST00000564994 TAS2R16Q9NYV7 291 aa9.52□□□□□ -0.89
VPS39-208ENST00000564994 CCDC167Q9P0B6 97 aa9.52□□□□□ -0.89
VPS39-208ENST00000564994 ZNF232Q9UNY5 417 aa9.52□□□□□ -0.89
VPS39-208ENST00000564994 SLC9A8Q9Y2E8 581 aa9.52□□□□□ -0.89
VPS39-208ENST00000564994 ABCA1O95477 2261 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms