RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 HSFY1Q96LI6 401 aa4.6□□□□□ -1.67
VPS35P1-201ENST00000563400 CDX2Q99626 313 aaPredicted RBP4.6□□□□□ -1.67
VPS35P1-201ENST00000563400 P2RY13Q9BPV8 354 aa4.6□□□□□ -1.67
VPS35P1-201ENST00000563400 SYT11Q9BT88 431 aa4.6□□□□□ -1.67
VPS35P1-201ENST00000563400 KRTAP4-9Q9BYQ8 210 aa4.6□□□□□ -1.67
VPS35P1-201ENST00000563400 ZBP1Q9H171 429 aa4.6□□□□□ -1.67
VPS35P1-201ENST00000563400 MRM3Q9HC36 420 aaKnown RBP4.6□□□□□ -1.67
VPS35P1-201ENST00000563400 A4GALTQ9NPC4 353 aa4.6□□□□□ -1.67
VPS35P1-201ENST00000563400 UBE2TQ9NPD8 197 aaPredicted RBP4.6□□□□□ -1.67
VPS35P1-201ENST00000563400 DMAP1Q9NPF5 467 aaPredicted RBP4.6□□□□□ -1.67
VPS35P1-201ENST00000563400 GDF3Q9NR23 364 aa4.6□□□□□ -1.67
VPS35P1-201ENST00000563400 GPR83Q9NYM4 423 aa4.6□□□□□ -1.67
VPS35P1-201ENST00000563400 IL36GQ9NZH8 169 aa4.6□□□□□ -1.67
VPS35P1-201ENST00000563400 IFNKQ9P0W0 207 aa4.6□□□□□ -1.67
VPS35P1-201ENST00000563400 ZNF319Q9P2F9 582 aa4.6□□□□□ -1.67
VPS35P1-201ENST00000563400 LSM7Q9UK45 103 aaKnown RBP4.6□□□□□ -1.67
VPS35P1-201ENST00000563400 RNF6Q9Y252 685 aa4.6□□□□□ -1.67
VPS35P1-201ENST00000563400 TSC22D4Q9Y3Q8 395 aa4.6□□□□□ -1.67
VPS35P1-201ENST00000563400 COL4A6Q14031 1691 aa4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 PDE4DIPQ5VU43 2346 aa4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 OR5K3A6NET4 321 aa4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 C2CD4BA6NLJ0 364 aa4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 TMEM210A6NLX4 147 aa4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 A8MUA0 341 aa4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 H0YHG0 523 aa4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 TULP2O00295 520 aa4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 B4GAT1O43505 415 aa4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 GMDSO60547 372 aa4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 ENTPD5O75356 428 aa4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 ZNF189O75820 626 aaPredicted RBP4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 LSM8O95777 96 aaKnown RBP4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 H1F0P07305 194 aaKnown RBP4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 HSMCR30P0CW71 290 aa4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 RD3LP0DJH9 198 aa4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 TBXA2RP21731 343 aa4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 DCKP27707 260 aa4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 TNFSF9P41273 254 aa4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 FHITP49789 147 aa4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 DUSP3P51452 185 aaPredicted RBP4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 NOVA1P51513 510 aaKnown RBP4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 EFNB2P52799 333 aa4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 PDX1P52945 283 aa4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 FADDQ13158 208 aa4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 SELENBP1Q13228 472 aa4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 SNTA1Q13424 505 aa4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 ITGA9Q13797 1035 aa4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 OPCMLQ14982 345 aa4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 SF3B4Q15427 424 aaKnown RBP eCLIP4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 SPA17Q15506 151 aa4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 TMEM52BQ4KMG9 183 aa4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 CLVS2Q5SYC1 327 aa4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 PDSS1Q5T2R2 415 aa4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 LINGO4Q6UY18 593 aa4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 ARCQ7LC44 396 aa4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 ERICH1Q86X53 443 aa4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 C17orf78Q8N4C9 275 aa4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 CLDN19Q8N6F1 224 aa4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 Q8N9G6 341 aaPredicted RBP4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 OR4C15Q8NGM1 316 aa4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 THAP6Q8TBB0 222 aa4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 LNX1Q8TBB1 728 aaPredicted RBP4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 GTF2H4Q92759 462 aa4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 CCDC124Q96CT7 223 aaKnown RBP4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 SCRN2Q96FV2 425 aa4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 ZFYVE19Q96K21 471 aa4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 ZNF578Q96N58 590 aaPredicted RBP4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 GFM1Q96RP9 751 aaKnown RBP4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 CTRCQ99895 268 aa4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 WDR77Q9BQA1 342 aaPredicted RBP4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 SYT15Q9BQS2 421 aa4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 WDR55Q9H6Y2 383 aaPredicted RBP4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 SMYD3Q9H7B4 428 aa4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 NT5MQ9NPB1 228 aa4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 PRSS16Q9NQE7 514 aa4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 STARD5Q9NSY2 213 aa4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 RCOR3Q9P2K3 495 aaPredicted RBP4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 MYEF2Q9P2K5 600 aaKnown RBP4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 MRM2Q9UI43 246 aaKnown RBP4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 PSMD13Q9UNM6 376 aa4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 ZFR2Q9UPR6 939 aaKnown RBP4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 DOCK5Q9H7D0 1870 aa4.59□□□□□ -1.67
VPS35P1-201ENST00000563400 C5orf60A6NFR6 353 aa4.58□□□□□ -1.68
VPS35P1-201ENST00000563400 H7C1Q1 480 aa4.58□□□□□ -1.68
VPS35P1-201ENST00000563400 GPR171O14626 319 aa4.58□□□□□ -1.68
VPS35P1-201ENST00000563400 SNAI2O43623 268 aa4.58□□□□□ -1.68
VPS35P1-201ENST00000563400 FAM189A1O60320 539 aa4.58□□□□□ -1.68
VPS35P1-201ENST00000563400 CA1P00915 261 aaPredicted RBP4.58□□□□□ -1.68
VPS35P1-201ENST00000563400 APOHP02749 345 aaPredicted RBP4.58□□□□□ -1.68
VPS35P1-201ENST00000563400 CALB1P05937 261 aa4.58□□□□□ -1.68
VPS35P1-201ENST00000563400 ANXA5P08758 320 aa4.58□□□□□ -1.68
VPS35P1-201ENST00000563400 CHRNB2P17787 502 aa4.58□□□□□ -1.68
VPS35P1-201ENST00000563400 KITLGP21583 273 aa4.58□□□□□ -1.68
VPS35P1-201ENST00000563400 GLRA1P23415 457 aa4.58□□□□□ -1.68
VPS35P1-201ENST00000563400 CD82P27701 267 aa4.58□□□□□ -1.68
VPS35P1-201ENST00000563400 CASP1P29466 404 aa4.58□□□□□ -1.68
VPS35P1-201ENST00000563400 RBMS1P29558 406 aaKnown RBP4.58□□□□□ -1.68
VPS35P1-201ENST00000563400 B3GALT5-AS1P59052 145 aa4.58□□□□□ -1.68
VPS35P1-201ENST00000563400 RAD51Q06609 339 aa4.58□□□□□ -1.68
VPS35P1-201ENST00000563400 MFGE8Q08431 387 aaPredicted RBP4.58□□□□□ -1.68
VPS35P1-201ENST00000563400 PPIDQ08752 370 aaKnown RBP4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms