RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 PIGKQ92643 395 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 RERGQ96A58 199 aaPredicted RBP6.89□□□□□ -1.31
LIMA1-213ENST00000552720 SLC22A18Q96BI1 424 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 CTHRC1Q96CG8 243 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 RASD2Q96D21 266 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 SMIM19Q96E16 107 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 WDR92Q96MX6 357 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 STACQ99469 402 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 GFI1Q99684 422 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 ZNF426Q9BUY5 554 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 C1QTNF7Q9BXJ2 289 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 FKRPQ9H9S5 495 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 FAM60AQ9NP50 221 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 INPP5EQ9NRR6 644 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 POT1Q9NUX5 634 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 C2orf42Q9NWW7 574 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 DNAJB12Q9NXW2 375 aaKnown RBP6.89□□□□□ -1.31
LIMA1-213ENST00000552720 OBP2AQ9NY56 170 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 CHRNA9Q9UGM1 479 aa6.89□□□□□ -1.31
LIMA1-213ENST00000552720 A0A087WV62 115 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 A0A1B0GVT2 93 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 URADA6NGE7 173 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 H3BSH0 61 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 PIN1P1O15428 100 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 GALR3O60755 368 aaPredicted RBP6.88□□□□□ -1.31
LIMA1-213ENST00000552720 FMO6PO60774 539 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 TOXO94900 526 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 UBL3O95164 117 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 HPXP02790 462 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 NTSR1P30989 418 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 SLC6A6P31641 620 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 SIRPAP78324 504 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 ERV3-1Q14264 604 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 ALG11Q2TAA5 492 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 FAAP20Q6NZ36 180 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 UBE2Q1Q7Z7E8 422 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 OR6K6Q8NGW6 343 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 GIMAP1Q8WWP7 306 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 HERVK_113Q902F9 699 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 SPACA7Q96KW9 195 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 HRASLS2Q9NWW9 162 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 UCKL1Q9NWZ5 548 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 HAO2Q9NYQ3 351 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 RWDD3Q9Y3V2 267 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 WDFY3Q8IZQ1 3526 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 A0A1W2PQ72 361 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 OR6C68A6NDL8 312 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 TRABD2BA6NFA1 517 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 LEUTXA8MZ59 168 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 ZNF593O00488 134 aaPredicted RBP6.88□□□□□ -1.31
LIMA1-213ENST00000552720 OGG1O15527 345 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 FLRT2O43155 660 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 NKX2-2O95096 273 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 KLF8O95600 359 aaPredicted RBP6.88□□□□□ -1.31
LIMA1-213ENST00000552720 EGFP01133 1207 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 TYRP1P17643 537 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 CD53P19397 219 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 S1PR1P21453 382 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 EDNRAP25101 427 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 RPL4P36578 427 aaKnown RBP6.88□□□□□ -1.31
LIMA1-213ENST00000552720 GDNFP39905 211 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 PBX2P40425 430 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 MMP15P51511 669 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 PGDP52209 483 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 PER3P56645 1201 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 TAS2R43P59537 309 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 NANOS3P60323 173 aaKnown RBP6.88□□□□□ -1.31
LIMA1-213ENST00000552720 ZP1P60852 638 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 RPS15P62841 145 aaKnown RBP6.88□□□□□ -1.31
LIMA1-213ENST00000552720 C19orf57Q0VDD7 668 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 TRAM1Q15629 374 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 GSG1Q2KHT4 349 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 ZBTB37Q5TC79 503 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 ARHGAP11AQ6P4F7 1023 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 NPSR1Q6W5P4 371 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 ZNF767PQ75MW2 155 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 SLC35F2Q8IXU6 374 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 ELMOD2Q8IZ81 293 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 CMTM4Q8IZR5 234 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 MS4A15Q8N5U1 240 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 CSNK1A1LQ8N752 337 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 ZNF433Q8N7K0 673 aaPredicted RBP6.88□□□□□ -1.31
LIMA1-213ENST00000552720 GATSQ8NAP1 163 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 ZNF784Q8NCA9 323 aaPredicted RBP6.88□□□□□ -1.31
LIMA1-213ENST00000552720 ZNF671Q8TAW3 534 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 BAHD1Q8TBE0 780 aaPredicted RBP6.88□□□□□ -1.31
LIMA1-213ENST00000552720 SNX33Q8WV41 574 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 FAM131CQ96AQ9 280 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 DNAJA3Q96EY1 480 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 GPR137Q96N19 417 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 TSSK2Q96PF2 358 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 LMF1Q96S06 567 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 CNN2Q99439 309 aaKnown RBP6.88□□□□□ -1.31
LIMA1-213ENST00000552720 TSPAN10Q9H1Z9 355 aaPredicted RBP6.88□□□□□ -1.31
LIMA1-213ENST00000552720 HEXA-AS1Q9H8Q6 139 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 LYRM4Q9HD34 91 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 NOX4Q9NPH5 578 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 LRIT1Q9P2V4 623 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 ICAM5Q9UMF0 924 aa6.88□□□□□ -1.31
LIMA1-213ENST00000552720 ENTPD2Q9Y5L3 495 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms