RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 PARPBPQ9NWS1 579 aa10.23□□□□□ -0.77
RTN3-209ENST00000538995 SLAMF8Q9P0V8 285 aa10.23□□□□□ -0.77
RTN3-209ENST00000538995 MALT1Q9UDY8 824 aa10.23□□□□□ -0.77
RTN3-209ENST00000538995 NIPSNAP3AQ9UFN0 247 aaPredicted RBP10.23□□□□□ -0.77
RTN3-209ENST00000538995 PRSS50Q9UI38 385 aa10.23□□□□□ -0.77
RTN3-209ENST00000538995 ZNF469Q96JG9 3925 aaPredicted RBP10.23□□□□□ -0.77
RTN3-209ENST00000538995 C2CD3Q4AC94 2353 aa10.22□□□□□ -0.77
RTN3-209ENST00000538995 ZC3H12DA2A288 527 aaKnown RBP10.22□□□□□ -0.77
RTN3-209ENST00000538995 PRORSD1PA6NEY8 169 aa10.22□□□□□ -0.77
RTN3-209ENST00000538995 AQP7P3A6NL99 342 aa10.22□□□□□ -0.77
RTN3-209ENST00000538995 TMEM229AB2RXF0 380 aa10.22□□□□□ -0.77
RTN3-209ENST00000538995 ANGPT2O15123 496 aa10.22□□□□□ -0.77
RTN3-209ENST00000538995 FRS3O43559 492 aa10.22□□□□□ -0.77
RTN3-209ENST00000538995 SMPD2O60906 423 aa10.22□□□□□ -0.77
RTN3-209ENST00000538995 NPIPB7O75200 414 aa10.22□□□□□ -0.77
RTN3-209ENST00000538995 MRPL33O75394 65 aaKnown RBP10.22□□□□□ -0.77
RTN3-209ENST00000538995 PRG2P13727 222 aa10.22□□□□□ -0.77
RTN3-209ENST00000538995 GGT1P19440 569 aa10.22□□□□□ -0.77
RTN3-209ENST00000538995 IGHV1-2P23083 117 aa10.22□□□□□ -0.77
RTN3-209ENST00000538995 HOXC12P31275 282 aa10.22□□□□□ -0.77
RTN3-209ENST00000538995 RIPPLY3P57055 190 aa10.22□□□□□ -0.77
RTN3-209ENST00000538995 ADAM8P78325 824 aa10.22□□□□□ -0.77
RTN3-209ENST00000538995 SLC17A1Q14916 467 aa10.22□□□□□ -0.77
RTN3-209ENST00000538995 TIMM23BQ5SRD1 257 aa10.22□□□□□ -0.77
RTN3-209ENST00000538995 C1QTNF12Q5T7M4 302 aa10.22□□□□□ -0.77
RTN3-209ENST00000538995 SHEQ5VZ18 495 aa10.22□□□□□ -0.77
RTN3-209ENST00000538995 ADAM5Q6NVV9 412 aa10.22□□□□□ -0.77
RTN3-209ENST00000538995 C6orf89Q6UWU4 347 aa10.22□□□□□ -0.77
RTN3-209ENST00000538995 DLEU7Q6UYE1 221 aa10.22□□□□□ -0.77
RTN3-209ENST00000538995 DHDDSQ86SQ9 333 aa10.22□□□□□ -0.77
RTN3-209ENST00000538995 ATG4DQ86TL0 474 aaPredicted RBP10.22□□□□□ -0.77
RTN3-209ENST00000538995 BHLHE22Q8NFJ8 381 aaPredicted RBP10.22□□□□□ -0.77
RTN3-209ENST00000538995 NFKBIDQ8NI38 313 aa10.22□□□□□ -0.77
RTN3-209ENST00000538995 STK35Q8TDR2 534 aa10.22□□□□□ -0.77
RTN3-209ENST00000538995 TMEM45BQ96B21 275 aa10.22□□□□□ -0.77
RTN3-209ENST00000538995 C3orf49Q96BT1 292 aa10.22□□□□□ -0.77
RTN3-209ENST00000538995 ZNF607Q96SK3 696 aa10.22□□□□□ -0.77
RTN3-209ENST00000538995 CPPED1Q9BRF8 314 aaPredicted RBP10.22□□□□□ -0.77
RTN3-209ENST00000538995 TAPBPLQ9BX59 468 aa10.22□□□□□ -0.77
RTN3-209ENST00000538995 ESRP2Q9H6T0 727 aaKnown RBP10.22□□□□□ -0.77
RTN3-209ENST00000538995 EVA1AQ9H8M9 152 aa10.22□□□□□ -0.77
RTN3-209ENST00000538995 ASB6Q9NWX5 421 aa10.22□□□□□ -0.77
RTN3-209ENST00000538995 DCTN4Q9UJW0 460 aa10.22□□□□□ -0.77
RTN3-209ENST00000538995 NDUFAF1Q9Y375 327 aa10.22□□□□□ -0.77
RTN3-209ENST00000538995 FLVCR1Q9Y5Y0 555 aa10.22□□□□□ -0.77
RTN3-209ENST00000538995 MED13LQ71F56 2210 aa10.22□□□□□ -0.77
RTN3-209ENST00000538995 VPS13CQ709C8 3753 aa10.22□□□□□ -0.77
RTN3-209ENST00000538995 SETD2Q9BYW2 2564 aaPredicted RBP10.21□□□□□ -0.77
RTN3-209ENST00000538995 ROS1P08922 2347 aa10.21□□□□□ -0.77
RTN3-209ENST00000538995 A0A0G2JND7 137 aa10.21□□□□□ -0.77
RTN3-209ENST00000538995 HS3ST1O14792 307 aa10.21□□□□□ -0.77
RTN3-209ENST00000538995 ARHGEF9O43307 516 aa10.21□□□□□ -0.77
RTN3-209ENST00000538995 RAMP1O60894 148 aa10.21□□□□□ -0.77
RTN3-209ENST00000538995 FZD7O75084 574 aa10.21□□□□□ -0.77
RTN3-209ENST00000538995 LYZL6O75951 148 aa10.21□□□□□ -0.77
RTN3-209ENST00000538995 VAMP5O95183 116 aa10.21□□□□□ -0.77
RTN3-209ENST00000538995 TROVE2P10155 538 aaKnown RBP eCLIP10.21□□□□□ -0.77
RTN3-209ENST00000538995 FOSL1P15407 271 aa10.21□□□□□ -0.77
RTN3-209ENST00000538995 SLC6A2P23975 617 aa10.21□□□□□ -0.77
RTN3-209ENST00000538995 EDNRAP25101 427 aa10.21□□□□□ -0.77
RTN3-209ENST00000538995 RBBP4Q09028 425 aa10.21□□□□□ -0.77
RTN3-209ENST00000538995 FOXD4Q12950 439 aaPredicted RBP10.21□□□□□ -0.77
RTN3-209ENST00000538995 SCARB2Q14108 478 aa10.21□□□□□ -0.77
RTN3-209ENST00000538995 PPA1Q15181 289 aa10.21□□□□□ -0.77
RTN3-209ENST00000538995 TSC22D1Q15714 1073 aa10.21□□□□□ -0.77
RTN3-209ENST00000538995 NCMAPQ5T1S8 102 aa10.21□□□□□ -0.77
RTN3-209ENST00000538995 OTUD3Q5T2D3 398 aaPredicted RBP10.21□□□□□ -0.77
RTN3-209ENST00000538995 C1orf140Q5VVS0 124 aa10.21□□□□□ -0.77
RTN3-209ENST00000538995 C5orf46Q6UWT4 87 aa10.21□□□□□ -0.77
RTN3-209ENST00000538995 SEZ6L2Q6UXD5 910 aa10.21□□□□□ -0.77
RTN3-209ENST00000538995 CASP12Q6UXS9 341 aa10.21□□□□□ -0.77
RTN3-209ENST00000538995 CCDC103Q8IW40 242 aa10.21□□□□□ -0.77
RTN3-209ENST00000538995 UBE2J2Q8N2K1 259 aa10.21□□□□□ -0.77
RTN3-209ENST00000538995 C10orf111Q8N326 155 aa10.21□□□□□ -0.77
RTN3-209ENST00000538995 ZNF433Q8N7K0 673 aaPredicted RBP10.21□□□□□ -0.77
RTN3-209ENST00000538995 ZNF611Q8N823 705 aa10.21□□□□□ -0.77
RTN3-209ENST00000538995 LSMEM1Q8N8F7 131 aa10.21□□□□□ -0.77
RTN3-209ENST00000538995 HIPK4Q8NE63 616 aa10.21□□□□□ -0.77
RTN3-209ENST00000538995 IGFBPL1Q8WX77 278 aa10.21□□□□□ -0.77
RTN3-209ENST00000538995 ZNF775Q96BV0 537 aaPredicted RBP10.21□□□□□ -0.77
RTN3-209ENST00000538995 MUCL1Q96DR8 90 aa10.21□□□□□ -0.77
RTN3-209ENST00000538995 THOC1Q96FV9 657 aaKnown RBP10.21□□□□□ -0.77
RTN3-209ENST00000538995 IKZF5Q9H5V7 419 aa10.21□□□□□ -0.77
RTN3-209ENST00000538995 DLL4Q9NR61 685 aa10.21□□□□□ -0.77
RTN3-209ENST00000538995 TAS2R16Q9NYV7 291 aa10.21□□□□□ -0.77
RTN3-209ENST00000538995 ANGPT4Q9Y264 503 aa10.21□□□□□ -0.77
RTN3-209ENST00000538995 RNF115Q9Y4L5 304 aa10.21□□□□□ -0.77
RTN3-209ENST00000538995 ACANP16112 2415 aa10.21□□□□□ -0.78
RTN3-209ENST00000538995 NF1P21359 2839 aa10.2□□□□□ -0.78
RTN3-209ENST00000538995 OR5H1A6NKK0 313 aa10.2□□□□□ -0.78
RTN3-209ENST00000538995 SERPINB7O75635 380 aa10.2□□□□□ -0.78
RTN3-209ENST00000538995 AHSA1O95433 338 aa10.2□□□□□ -0.78
RTN3-209ENST00000538995 CD3EP07766 207 aa10.2□□□□□ -0.78
RTN3-209ENST00000538995 PAX1P15863 534 aa10.2□□□□□ -0.78
RTN3-209ENST00000538995 ADSLP30566 484 aaPredicted RBP10.2□□□□□ -0.78
RTN3-209ENST00000538995 NKX6-1P78426 367 aaPredicted RBP10.2□□□□□ -0.78
RTN3-209ENST00000538995 CEACAM7Q14002 265 aa10.2□□□□□ -0.78
RTN3-209ENST00000538995 OR7A5Q15622 319 aa10.2□□□□□ -0.78
RTN3-209ENST00000538995 STK11Q15831 433 aa10.2□□□□□ -0.78
RTN3-209ENST00000538995 ADRM1Q16186 407 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms