RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 A0A1B0GV90 55 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 LRRN3E7EW58 273 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 PLRG1O43660 514 aaKnown RBP12.91□□□□□ -0.34
LIG1-203ENST00000536218 S100A8P05109 93 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 ERGP11308 486 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 SLC1A3P43003 542 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 TNFRSF4P43489 277 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 ARFIP1P53367 373 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 UBE2MP61081 183 aaKnown RBP12.91□□□□□ -0.34
LIG1-203ENST00000536218 STX4Q12846 297 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 RAB30Q15771 203 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 HMGN2P46Q86SG4 172 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 NAXDQ8IW45 347 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 FAM26EQ8N5C1 309 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 ZNF565Q8N9K5 539 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 CAMKVQ8NCB2 501 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 OR11G2Q8NGC1 345 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 OR52B4Q8NGK2 314 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 GNPDA2Q8TDQ7 276 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 RGMAQ96B86 450 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 FCRL4Q96PJ5 515 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 MAP3K3Q99759 626 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 PCBD2Q9H0N5 130 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 LRRN3Q9H3W5 708 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 PELI2Q9HAT8 420 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 LHX9Q9NQ69 397 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 CTPS2Q9NRF8 586 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 GALR3O60755 368 aaPredicted RBP12.91□□□□□ -0.34
LIG1-203ENST00000536218 NME6O75414 186 aaPredicted RBP12.91□□□□□ -0.34
LIG1-203ENST00000536218 CH25HO95992 272 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 ACP2P11117 423 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 PRR5P85299 388 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 REEP5Q00765 189 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 CLEC12AQ5QGZ9 265 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 ACER2Q5QJU3 275 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 SLC22A10Q63ZE4 541 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 FAAP20Q6NZ36 180 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 TMEM184AQ6ZMB5 413 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 OLIG3Q7RTU3 272 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 RBM45Q8IUH3 476 aaKnown RBP12.91□□□□□ -0.34
LIG1-203ENST00000536218 ELP5Q8TE02 316 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 TEFMQ96QE5 360 aaKnown RBP12.91□□□□□ -0.34
LIG1-203ENST00000536218 RHBGQ9H310 441 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 ASH2LQ9UBL3 628 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 TBC1D29Q9UFV1 150 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 ATXN7L1Q9ULK2 861 aaPredicted RBP12.91□□□□□ -0.34
LIG1-203ENST00000536218 PIAS3Q9Y6X2 628 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 COL4A3Q01955 1670 aa12.91□□□□□ -0.34
LIG1-203ENST00000536218 ERI3O43414 337 aaKnown RBP12.9□□□□□ -0.34
LIG1-203ENST00000536218 C8orf89P0DMQ9 161 aa12.9□□□□□ -0.34
LIG1-203ENST00000536218 PSMB1P20618 241 aaKnown RBP12.9□□□□□ -0.34
LIG1-203ENST00000536218 GDNFP39905 211 aa12.9□□□□□ -0.34
LIG1-203ENST00000536218 RAB5BP61020 215 aa12.9□□□□□ -0.34
LIG1-203ENST00000536218 BLOC1S1P78537 153 aa12.9□□□□□ -0.34
LIG1-203ENST00000536218 UBXN2BQ14CS0 331 aa12.9□□□□□ -0.34
LIG1-203ENST00000536218 SPEGQ15772 3267 aa12.9□□□□□ -0.34
LIG1-203ENST00000536218 RPE65Q16518 533 aa12.9□□□□□ -0.34
LIG1-203ENST00000536218 ZNF750Q32MQ0 723 aa12.9□□□□□ -0.34
LIG1-203ENST00000536218 SLC25A35Q3KQZ1 300 aa12.9□□□□□ -0.34
LIG1-203ENST00000536218 SFXN4Q6P4A7 337 aa12.9□□□□□ -0.34
LIG1-203ENST00000536218 UBE3DQ7Z6J8 389 aa12.9□□□□□ -0.34
LIG1-203ENST00000536218 NUDT13Q86X67 352 aa12.9□□□□□ -0.34
LIG1-203ENST00000536218 OR5M1Q8NGP8 315 aa12.9□□□□□ -0.34
LIG1-203ENST00000536218 GOT1L1Q8NHS2 421 aaPredicted RBP12.9□□□□□ -0.34
LIG1-203ENST00000536218 MFFQ9GZY8 342 aa12.9□□□□□ -0.34
LIG1-203ENST00000536218 FBXW2Q9UKT8 454 aa12.9□□□□□ -0.34
LIG1-203ENST00000536218 ICKQ9UPZ9 632 aa12.9□□□□□ -0.34
LIG1-203ENST00000536218 SLC17A4Q9Y2C5 497 aa12.9□□□□□ -0.34
LIG1-203ENST00000536218 EXOSC1Q9Y3B2 195 aaKnown RBP12.9□□□□□ -0.34
LIG1-203ENST00000536218 SCN3AQ9NY46 2000 aa12.9□□□□□ -0.34
LIG1-203ENST00000536218 CCDC88CQ9P219 2028 aa12.9□□□□□ -0.34
LIG1-203ENST00000536218 CREBL2O60519 120 aaPredicted RBP12.9□□□□□ -0.34
LIG1-203ENST00000536218 IGHV2-70P01814 119 aa12.9□□□□□ -0.34
LIG1-203ENST00000536218 HIST1H2ABP04908 130 aa12.9□□□□□ -0.34
LIG1-203ENST00000536218 BCHEP06276 602 aa12.9□□□□□ -0.34
LIG1-203ENST00000536218 CD63P08962 238 aa12.9□□□□□ -0.34
LIG1-203ENST00000536218 CALCRP30988 508 aa12.9□□□□□ -0.34
LIG1-203ENST00000536218 BCL6P41182 706 aa12.9□□□□□ -0.34
LIG1-203ENST00000536218 GIPRP48546 466 aa12.9□□□□□ -0.34
LIG1-203ENST00000536218 RAG2P55895 527 aa12.9□□□□□ -0.34
LIG1-203ENST00000536218 LSM11P83369 360 aaKnown RBP eCLIP12.9□□□□□ -0.34
LIG1-203ENST00000536218 RAB40BQ12829 278 aa12.9□□□□□ -0.34
LIG1-203ENST00000536218 HIST3H2AQ7L7L0 130 aa12.9□□□□□ -0.34
LIG1-203ENST00000536218 HORMAD2Q8N7B1 307 aa12.9□□□□□ -0.34
LIG1-203ENST00000536218 OR51Q1Q8NH59 317 aa12.9□□□□□ -0.34
LIG1-203ENST00000536218 OR1E3Q8WZA6 343 aa12.9□□□□□ -0.34
LIG1-203ENST00000536218 HIST1H2ACQ93077 130 aa12.9□□□□□ -0.34
LIG1-203ENST00000536218 A0A1W2PPK0 400 aa12.89□□□□□ -0.35
LIG1-203ENST00000536218 C5orf58C9J3I9 102 aa12.89□□□□□ -0.35
LIG1-203ENST00000536218 SNRPBP14678 240 aaKnown RBP12.89□□□□□ -0.35
LIG1-203ENST00000536218 NR0B1P51843 470 aaKnown RBP12.89□□□□□ -0.35
LIG1-203ENST00000536218 MLLT1Q03111 559 aaPredicted RBP12.89□□□□□ -0.35
LIG1-203ENST00000536218 TMEM255AQ5JRV8 349 aa12.89□□□□□ -0.35
LIG1-203ENST00000536218 PGBD2Q6P3X8 592 aa12.89□□□□□ -0.35
LIG1-203ENST00000536218 C11orf88Q6PI97 169 aa12.89□□□□□ -0.35
LIG1-203ENST00000536218 LINGO2Q7L985 606 aa12.89□□□□□ -0.35
LIG1-203ENST00000536218 NAA40Q86UY6 237 aa12.89□□□□□ -0.35
LIG1-203ENST00000536218 TBX5Q99593 518 aa12.89□□□□□ -0.35
LIG1-203ENST00000536218 FAIM2Q9BWQ8 316 aa12.89□□□□□ -0.35
LIG1-203ENST00000536218 POLDIP3Q9BY77 421 aaKnown RBP12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms