RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 ARMCX4Q5H9R4 360 aa7.04□□□□□ -1.28
CD44-232ENST00000531118 TECRLQ5HYJ1 363 aa7.04□□□□□ -1.28
CD44-232ENST00000531118 DDX59Q5T1V6 619 aaKnown RBP eCLIP7.04□□□□□ -1.28
CD44-232ENST00000531118 SAXO2Q658L1 398 aa7.04□□□□□ -1.28
CD44-232ENST00000531118 ACSM2BQ68CK6 577 aa7.04□□□□□ -1.28
CD44-232ENST00000531118 TUBA1AQ71U36 451 aa7.04□□□□□ -1.28
CD44-232ENST00000531118 RPS27LQ71UM5 84 aaKnown RBP7.04□□□□□ -1.28
CD44-232ENST00000531118 SZRD1Q7Z422 152 aa7.04□□□□□ -1.28
CD44-232ENST00000531118 ZBED8Q8IZ13 594 aa7.04□□□□□ -1.28
CD44-232ENST00000531118 COX18Q8N8Q8 333 aa7.04□□□□□ -1.28
CD44-232ENST00000531118 OR1K1Q8NGR3 316 aa7.04□□□□□ -1.28
CD44-232ENST00000531118 RFWD2Q8NHY2 731 aa7.04□□□□□ -1.28
CD44-232ENST00000531118 SLC25A43Q8WUT9 341 aaPredicted RBP7.04□□□□□ -1.28
CD44-232ENST00000531118 TMIGD2Q96BF3 282 aa7.04□□□□□ -1.28
CD44-232ENST00000531118 GIMAP5Q96F15 307 aa7.04□□□□□ -1.28
CD44-232ENST00000531118 APIPQ96GX9 242 aa7.04□□□□□ -1.28
CD44-232ENST00000531118 BOD1Q96IK1 185 aa7.04□□□□□ -1.28
CD44-232ENST00000531118 ZNF416Q9BWM5 594 aa7.04□□□□□ -1.28
CD44-232ENST00000531118 ACPTQ9BZG2 426 aa7.04□□□□□ -1.28
CD44-232ENST00000531118 LZTFL1Q9NQ48 299 aa7.04□□□□□ -1.28
CD44-232ENST00000531118 MIEF1Q9NQG6 463 aa7.04□□□□□ -1.28
CD44-232ENST00000531118 OXSMQ9NWU1 459 aa7.04□□□□□ -1.28
CD44-232ENST00000531118 GIN1Q9NXP7 522 aa7.04□□□□□ -1.28
CD44-232ENST00000531118 ZNF69Q9UC07 566 aa7.04□□□□□ -1.28
CD44-232ENST00000531118 GRID1Q9ULK0 1009 aa7.04□□□□□ -1.28
CD44-232ENST00000531118 FLVCR1Q9Y5Y0 555 aa7.04□□□□□ -1.28
CD44-232ENST00000531118 IGHV2OR16-5A0A0B4J2B6 119 aa7.03□□□□□ -1.28
CD44-232ENST00000531118 A0A1B0GUS0 222 aa7.03□□□□□ -1.28
CD44-232ENST00000531118 TCRBV9S1A1TA0A576 114 aa7.03□□□□□ -1.28
CD44-232ENST00000531118 OR6C65A6NJZ3 312 aa7.03□□□□□ -1.28
CD44-232ENST00000531118 STX16-NPEPL1H3BU86 382 aa7.03□□□□□ -1.28
CD44-232ENST00000531118 MANBAO00462 879 aa7.03□□□□□ -1.28
CD44-232ENST00000531118 STX16O14662 325 aa7.03□□□□□ -1.28
CD44-232ENST00000531118 PIP5K1BO14986 540 aa7.03□□□□□ -1.28
CD44-232ENST00000531118 SCAMP2O15127 329 aaKnown RBP7.03□□□□□ -1.28
CD44-232ENST00000531118 DNPH1O43598 174 aa7.03□□□□□ -1.28
CD44-232ENST00000531118 SYNGR3O43761 229 aa7.03□□□□□ -1.28
CD44-232ENST00000531118 SEC31AO94979 1220 aaKnown RBP7.03□□□□□ -1.28
CD44-232ENST00000531118 PMS2P2O95744 297 aa7.03□□□□□ -1.28
CD44-232ENST00000531118 HSPA4LO95757 839 aa7.03□□□□□ -1.28
CD44-232ENST00000531118 OTCP00480 354 aa7.03□□□□□ -1.28
CD44-232ENST00000531118 IGHV2-5P01817 119 aa7.03□□□□□ -1.28
CD44-232ENST00000531118 PRB2P02812 416 aaPredicted RBP7.03□□□□□ -1.28
CD44-232ENST00000531118 CELA3BP08861 270 aa7.03□□□□□ -1.28
CD44-232ENST00000531118 GATA3P23771 443 aa7.03□□□□□ -1.28
CD44-232ENST00000531118 COL8A2P25067 703 aa7.03□□□□□ -1.28
CD44-232ENST00000531118 SSTR1P30872 391 aa7.03□□□□□ -1.28
CD44-232ENST00000531118 ADMP35318 185 aa7.03□□□□□ -1.28
CD44-232ENST00000531118 GSTM5P46439 218 aa7.03□□□□□ -1.28
CD44-232ENST00000531118 HTR6P50406 440 aa7.03□□□□□ -1.28
CD44-232ENST00000531118 UBE2NP61088 152 aaKnown RBP7.03□□□□□ -1.28
CD44-232ENST00000531118 CBFBQ13951 182 aa7.03□□□□□ -1.28
CD44-232ENST00000531118 SLC9A3R2Q15599 337 aa7.03□□□□□ -1.28
CD44-232ENST00000531118 MSMPQ1L6U9 139 aa7.03□□□□□ -1.28
CD44-232ENST00000531118 AVPI1Q5T686 147 aa7.03□□□□□ -1.28
CD44-232ENST00000531118 REP15Q6BDI9 236 aa7.03□□□□□ -1.28
CD44-232ENST00000531118 ASPHD2Q6ICH7 369 aa7.03□□□□□ -1.28
CD44-232ENST00000531118 ANKRD16Q6P6B7 361 aa7.03□□□□□ -1.28
CD44-232ENST00000531118 ZNF551Q7Z340 670 aaPredicted RBP7.03□□□□□ -1.28
CD44-232ENST00000531118 REC114Q7Z4M0 266 aa7.03□□□□□ -1.28
CD44-232ENST00000531118 CTAGE3PQ8IX95 158 aa7.03□□□□□ -1.28
CD44-232ENST00000531118 ZNF614Q8N883 585 aa7.03□□□□□ -1.28
CD44-232ENST00000531118 ARL8AQ96BM9 186 aa7.03□□□□□ -1.28
CD44-232ENST00000531118 PHF21BQ96EK2 531 aa7.03□□□□□ -1.28
CD44-232ENST00000531118 DNAJA3Q96EY1 480 aa7.03□□□□□ -1.28
CD44-232ENST00000531118 ALKBH3Q96Q83 286 aaPredicted RBP7.03□□□□□ -1.28
CD44-232ENST00000531118 GPA33Q99795 319 aa7.03□□□□□ -1.28
CD44-232ENST00000531118 MRPL37Q9BZE1 423 aaKnown RBP7.03□□□□□ -1.28
CD44-232ENST00000531118 NELFAQ9H3P2 528 aa7.03□□□□□ -1.28
CD44-232ENST00000531118 NOX3Q9HBY0 568 aa7.03□□□□□ -1.28
CD44-232ENST00000531118 MID2Q9UJV3 735 aa7.03□□□□□ -1.28
CD44-232ENST00000531118 ZNF225Q9UK10 706 aa7.03□□□□□ -1.28
CD44-232ENST00000531118 TET2Q6N021 2002 aaPredicted RBP7.03□□□□□ -1.28
CD44-232ENST00000531118 DNAH1Q9P2D7 4330 aa7.02□□□□□ -1.29
CD44-232ENST00000531118 LOC100653049A0A140TA62 436 aa7.02□□□□□ -1.29
CD44-232ENST00000531118 CCDC151A5D8V7 595 aa7.02□□□□□ -1.29
CD44-232ENST00000531118 VSTM5A8MXK1 200 aa7.02□□□□□ -1.29
CD44-232ENST00000531118 G3V4G9 280 aa7.02□□□□□ -1.29
CD44-232ENST00000531118 H3BNH8 94 aa7.02□□□□□ -1.29
CD44-232ENST00000531118 PPP6CO00743 305 aa7.02□□□□□ -1.29
CD44-232ENST00000531118 TP73O15350 636 aa7.02□□□□□ -1.29
CD44-232ENST00000531118 KRT34O76011 436 aa7.02□□□□□ -1.29
CD44-232ENST00000531118 OR4F21O95013 312 aa7.02□□□□□ -1.29
CD44-232ENST00000531118 LGI1O95970 557 aa7.02□□□□□ -1.29
CD44-232ENST00000531118 IGKV3-15P01624 115 aa7.02□□□□□ -1.29
CD44-232ENST00000531118 GSNP06396 782 aa7.02□□□□□ -1.29
CD44-232ENST00000531118 ANXA4P09525 319 aaPredicted RBP7.02□□□□□ -1.29
CD44-232ENST00000531118 TFPIP10646 304 aa7.02□□□□□ -1.29
CD44-232ENST00000531118 UBL4AP11441 157 aa7.02□□□□□ -1.29
CD44-232ENST00000531118 TSPAN8P19075 237 aa7.02□□□□□ -1.29
CD44-232ENST00000531118 TCN1P20061 433 aaPredicted RBP7.02□□□□□ -1.29
CD44-232ENST00000531118 PAX7P23759 505 aa7.02□□□□□ -1.29
CD44-232ENST00000531118 PCGF2P35227 344 aa7.02□□□□□ -1.29
CD44-232ENST00000531118 ALDH3B1P43353 468 aa7.02□□□□□ -1.29
CD44-232ENST00000531118 MAGEA8P43361 318 aa7.02□□□□□ -1.29
CD44-232ENST00000531118 PRKAG1P54619 331 aa7.02□□□□□ -1.29
CD44-232ENST00000531118 RAG2P55895 527 aa7.02□□□□□ -1.29
CD44-232ENST00000531118 TMEM33P57088 247 aa7.02□□□□□ -1.29
CD44-232ENST00000531118 POU6F2P78424 691 aaPredicted RBP7.02□□□□□ -1.29
CD44-232ENST00000531118 MRPS11P82912 194 aaKnown RBP7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms