RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 UBL3O95164 117 aa19.48■□□□□ 0.71
VPS28-205ENST00000526204 IGLV3-19P01714 112 aa19.48■□□□□ 0.71
VPS28-205ENST00000526204 UCHL1P09936 223 aa19.48■□□□□ 0.71
VPS28-205ENST00000526204 EPXP11678 715 aa19.48■□□□□ 0.71
VPS28-205ENST00000526204 HCCSP53701 268 aa19.48■□□□□ 0.71
VPS28-205ENST00000526204 HSF2Q03933 536 aa19.48■□□□□ 0.71
VPS28-205ENST00000526204 TNK1Q13470 666 aa19.48■□□□□ 0.71
VPS28-205ENST00000526204 C1orf61Q13536 156 aa19.48■□□□□ 0.71
VPS28-205ENST00000526204 BAIAP2L2Q6UXY1 529 aa19.48■□□□□ 0.71
VPS28-205ENST00000526204 OVCH1Q7RTY7 1134 aa19.48■□□□□ 0.71
VPS28-205ENST00000526204 ARL14Q8N4G2 192 aa19.48■□□□□ 0.71
VPS28-205ENST00000526204 RFLNBQ8N5W9 214 aa19.48■□□□□ 0.71
VPS28-205ENST00000526204 TCTN2Q96GX1 697 aa19.48■□□□□ 0.71
VPS28-205ENST00000526204 GFM1Q96RP9 751 aaKnown RBP19.48■□□□□ 0.71
VPS28-205ENST00000526204 NRIP3Q9NQ35 241 aa19.48■□□□□ 0.71
VPS28-205ENST00000526204 LRIT1Q9P2V4 623 aa19.48■□□□□ 0.71
VPS28-205ENST00000526204 ARHGEF9O43307 516 aa19.47■□□□□ 0.71
VPS28-205ENST00000526204 ZNF749O43361 778 aa19.47■□□□□ 0.71
VPS28-205ENST00000526204 CDC123O75794 336 aaPredicted RBP19.47■□□□□ 0.71
VPS28-205ENST00000526204 NSA2O95478 260 aaKnown RBP19.47■□□□□ 0.71
VPS28-205ENST00000526204 PRPS1P60891 318 aa19.47■□□□□ 0.71
VPS28-205ENST00000526204 FUT7Q11130 342 aa19.47■□□□□ 0.71
VPS28-205ENST00000526204 CPEB4Q17RY0 729 aaKnown RBP eCLIP19.47■□□□□ 0.71
VPS28-205ENST00000526204 COL13A1Q5TAT6 717 aaPredicted RBP19.47■□□□□ 0.71
VPS28-205ENST00000526204 SLITRK4Q8IW52 837 aa19.47■□□□□ 0.71
VPS28-205ENST00000526204 LRRC17Q8N6Y2 441 aa19.47■□□□□ 0.71
VPS28-205ENST00000526204 BCORP1Q8N888 145 aa19.47■□□□□ 0.71
VPS28-205ENST00000526204 NPEPL1Q8NDH3 523 aa19.47■□□□□ 0.71
VPS28-205ENST00000526204 OR13C5Q8NGS8 318 aa19.47■□□□□ 0.71
VPS28-205ENST00000526204 OR4C3Q8NH37 302 aa19.47■□□□□ 0.71
VPS28-205ENST00000526204 C16orf52Q8NHV5 167 aa19.47■□□□□ 0.71
VPS28-205ENST00000526204 GTPBP2Q9BX10 602 aaKnown RBP19.47■□□□□ 0.71
VPS28-205ENST00000526204 OR10A5Q9H207 317 aa19.47■□□□□ 0.71
VPS28-205ENST00000526204 TRBV2A0A0J9YWF9 115 aa19.46■□□□□ 0.71
VPS28-205ENST00000526204 ANKRD61A6NGH8 418 aa19.46■□□□□ 0.71
VPS28-205ENST00000526204 OR7A10O76100 309 aa19.46■□□□□ 0.71
VPS28-205ENST00000526204 DHFRP00374 187 aa19.46■□□□□ 0.71
VPS28-205ENST00000526204 NAA10P41227 235 aaPredicted RBP19.46■□□□□ 0.71
VPS28-205ENST00000526204 MMP15P51511 669 aa19.46■□□□□ 0.71
VPS28-205ENST00000526204 MRPL28Q13084 256 aaKnown RBP19.46■□□□□ 0.71
VPS28-205ENST00000526204 IL10RAQ13651 578 aa19.46■□□□□ 0.71
VPS28-205ENST00000526204 KRT74Q7RTS7 529 aa19.46■□□□□ 0.71
VPS28-205ENST00000526204 FRMD1Q8N878 549 aa19.46■□□□□ 0.71
VPS28-205ENST00000526204 ACOXLQ9NUZ1 547 aa19.46■□□□□ 0.71
VPS28-205ENST00000526204 GNG8Q9UK08 70 aa19.46■□□□□ 0.71
VPS28-205ENST00000526204 ADAM18Q9Y3Q7 739 aa19.46■□□□□ 0.71
VPS28-205ENST00000526204 B4DGG1 531 aa19.46■□□□□ 0.71
VPS28-205ENST00000526204 HYAL3O43820 417 aaPredicted RBP19.46■□□□□ 0.71
VPS28-205ENST00000526204 GPRIN2O60269 458 aa19.46■□□□□ 0.71
VPS28-205ENST00000526204 NTRK2Q16620 822 aa19.46■□□□□ 0.71
VPS28-205ENST00000526204 C6orf183Q5T699 404 aa19.46■□□□□ 0.71
VPS28-205ENST00000526204 OR51L1Q8NGJ5 315 aa19.46■□□□□ 0.71
VPS28-205ENST00000526204 TOE1Q96GM8 510 aaKnown RBP19.46■□□□□ 0.71
VPS28-205ENST00000526204 DDOQ99489 341 aa19.46■□□□□ 0.71
VPS28-205ENST00000526204 NMNAT2Q9BZQ4 307 aa19.46■□□□□ 0.71
VPS28-205ENST00000526204 NCDNQ9UBB6 729 aa19.46■□□□□ 0.71
VPS28-205ENST00000526204 ERVK-19Q9WJR5 959 aa19.46■□□□□ 0.71
VPS28-205ENST00000526204 MAU2Q9Y6X3 613 aa19.46■□□□□ 0.71
VPS28-205ENST00000526204 UNC80Q8N2C7 3258 aa19.46■□□□□ 0.71
VPS28-205ENST00000526204 A0A1B0GVC2 190 aa19.45■□□□□ 0.7
VPS28-205ENST00000526204 A6NIN4 97 aa19.45■□□□□ 0.7
VPS28-205ENST00000526204 IGF2P01344 180 aa19.45■□□□□ 0.7
VPS28-205ENST00000526204 SPI1P17947 270 aa19.45■□□□□ 0.7
VPS28-205ENST00000526204 ATF1P18846 271 aa19.45■□□□□ 0.7
VPS28-205ENST00000526204 EDNRAP25101 427 aa19.45■□□□□ 0.7
VPS28-205ENST00000526204 PGDP52209 483 aa19.45■□□□□ 0.7
VPS28-205ENST00000526204 HSD17B7P56937 341 aa19.45■□□□□ 0.7
VPS28-205ENST00000526204 RPS4XP62701 263 aaKnown RBP19.45■□□□□ 0.7
VPS28-205ENST00000526204 BTG2P78543 158 aa19.45■□□□□ 0.7
VPS28-205ENST00000526204 Q5BKY6 102 aa19.45■□□□□ 0.7
VPS28-205ENST00000526204 PARGQ86W56 976 aa19.45■□□□□ 0.7
VPS28-205ENST00000526204 DTX3Q8N9I9 347 aa19.45■□□□□ 0.7
VPS28-205ENST00000526204 OIT3Q8WWZ8 545 aa19.45■□□□□ 0.7
VPS28-205ENST00000526204 C3orf49Q96BT1 292 aa19.45■□□□□ 0.7
VPS28-205ENST00000526204 CMTM3Q96MX0 182 aa19.45■□□□□ 0.7
VPS28-205ENST00000526204 NECTIN4Q96NY8 510 aa19.45■□□□□ 0.7
VPS28-205ENST00000526204 GPX7Q96SL4 187 aaPredicted RBP19.45■□□□□ 0.7
VPS28-205ENST00000526204 NMNAT3Q96T66 252 aa19.45■□□□□ 0.7
VPS28-205ENST00000526204 PELOQ9BRX2 385 aaKnown RBP19.45■□□□□ 0.7
VPS28-205ENST00000526204 TTTY10Q9BZA0 68 aa19.45■□□□□ 0.7
VPS28-205ENST00000526204 DPAGT1Q9H3H5 408 aa19.45■□□□□ 0.7
VPS28-205ENST00000526204 GALNT9Q9HCQ5 603 aa19.45■□□□□ 0.7
VPS28-205ENST00000526204 BRD7Q9NPI1 651 aa19.45■□□□□ 0.7
VPS28-205ENST00000526204 RABL2AQ9UBK7 228 aaPredicted RBP19.45■□□□□ 0.7
VPS28-205ENST00000526204 PRODH2Q9UF12 536 aa19.45■□□□□ 0.7
VPS28-205ENST00000526204 RABL2BQ9UNT1 228 aa19.45■□□□□ 0.7
VPS28-205ENST00000526204 CLDN16Q9Y5I7 305 aa19.45■□□□□ 0.7
VPS28-205ENST00000526204 LOC105378220A0A1B0GUY1 285 aaPredicted RBP19.45■□□□□ 0.7
VPS28-205ENST00000526204 A6NL46 340 aa19.45■□□□□ 0.7
VPS28-205ENST00000526204 ZNF879B4DU55 563 aa19.45■□□□□ 0.7
VPS28-205ENST00000526204 GALNSP34059 522 aa19.45■□□□□ 0.7
VPS28-205ENST00000526204 NUDT1P36639 197 aa19.45■□□□□ 0.7
VPS28-205ENST00000526204 RPS11P62280 158 aaKnown RBP eCLIP19.45■□□□□ 0.7
VPS28-205ENST00000526204 MAT1AQ00266 395 aaKnown RBP19.45■□□□□ 0.7
VPS28-205ENST00000526204 SRSF5Q13243 272 aaKnown RBP19.45■□□□□ 0.7
VPS28-205ENST00000526204 CCINQ13939 588 aa19.45■□□□□ 0.7
VPS28-205ENST00000526204 ERV3-1Q14264 604 aa19.45■□□□□ 0.7
VPS28-205ENST00000526204 NDUFAF6Q330K2 333 aa19.45■□□□□ 0.7
VPS28-205ENST00000526204 SLC36A2Q495M3 483 aa19.45■□□□□ 0.7
VPS28-205ENST00000526204 KLHL26Q53HC5 615 aa19.45■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms