RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 TIGARQ9NQ88 270 aa9.07□□□□□ -0.96
VPS28-204ENST00000526054 CTPS2Q9NRF8 586 aa9.07□□□□□ -0.96
VPS28-204ENST00000526054 BEX4Q9NWD9 120 aaPredicted RBP9.07□□□□□ -0.96
VPS28-204ENST00000526054 ADPRHL2Q9NX46 363 aa9.07□□□□□ -0.96
VPS28-204ENST00000526054 SELENONQ9NZV5 590 aa9.07□□□□□ -0.96
VPS28-204ENST00000526054 CHRNA9Q9UGM1 479 aa9.07□□□□□ -0.96
VPS28-204ENST00000526054 SLC9A8Q9Y2E8 581 aa9.07□□□□□ -0.96
VPS28-204ENST00000526054 TMED7-TICAM2A0A0A6YYA0 188 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 A0A1W2PNV4 684 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 A0A1W2PPR1 153 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 SLC22A20A6NK97 555 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 M0R3H8 397 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 TNFSF11O14788 317 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 CASKO14936 926 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 ADAMDEC1O15204 470 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 ZNF208O43345 1280 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 TNFSF13O75888 250 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 SMNDC1O75940 238 aaKnown RBP eCLIP9.06□□□□□ -0.96
VPS28-204ENST00000526054 SYNGR4O95473 234 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 LGI1O95970 557 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 OPN1LWP04000 364 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 FESP07332 822 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 TFPIP10646 304 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 PRG2P13727 222 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 HSD17B1P14061 328 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 CD53P19397 219 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 CD247P20963 164 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 CXCR1P25024 350 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 CLDN15P56746 228 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 NRF1Q16656 503 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 DUSP7Q16829 419 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 CTU2Q2VPK5 515 aaKnown RBP9.06□□□□□ -0.96
VPS28-204ENST00000526054 TMEM176BQ3YBM2 270 aaPredicted RBP9.06□□□□□ -0.96
VPS28-204ENST00000526054 SPATS1Q496A3 300 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 GLIPR1L2Q4G1C9 344 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 CYBRD1Q53TN4 286 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 SYT14P1Q58G82 188 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 EEF1A1P5Q5VTE0 462 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 HBMQ6B0K9 141 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 PPP4R4Q6NUP7 873 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 COMTD1Q86VU5 262 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 ARHGAP24Q8N264 748 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 CNEP1R1Q8N9A8 125 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 RBM15BQ8NDT2 890 aaKnown RBP9.06□□□□□ -0.96
VPS28-204ENST00000526054 GPR32P1Q8NGA4 272 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 OR52E4Q8NGH9 312 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 OR10D3Q8NH80 312 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 LZICQ8WZA0 190 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 FAM162AQ96A26 154 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 ZNF524Q96C55 264 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 DDIT4LQ96D03 193 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 ADGRG7Q96K78 797 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 C18orf12Q96KH6 178 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 CDRT15Q96T59 188 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 ARHGDIGQ99819 225 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 PRRG4Q9BZD6 226 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 TMEM27Q9HBJ8 222 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 GMPR2Q9P2T1 348 aaKnown RBP9.06□□□□□ -0.96
VPS28-204ENST00000526054 NDRG3Q9UGV2 375 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 OSGIN1Q9UJX0 560 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 MCTS1Q9ULC4 181 aaKnown RBP9.06□□□□□ -0.96
VPS28-204ENST00000526054 TMED7Q9Y3B3 224 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 ZNF175Q9Y473 711 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 TESMINQ9Y4I5 508 aa9.06□□□□□ -0.96
VPS28-204ENST00000526054 A0A0J9YW62 118 aa9.05□□□□□ -0.96
VPS28-204ENST00000526054 TMEM72A0PK05 275 aa9.05□□□□□ -0.96
VPS28-204ENST00000526054 ELOA3DA6NLF2 546 aaPredicted RBP9.05□□□□□ -0.96
VPS28-204ENST00000526054 A8MXE2 369 aa9.05□□□□□ -0.96
VPS28-204ENST00000526054 H0YC42 278 aa9.05□□□□□ -0.96
VPS28-204ENST00000526054 MSTNO14793 375 aa9.05□□□□□ -0.96
VPS28-204ENST00000526054 EFNA2O43921 213 aa9.05□□□□□ -0.96
VPS28-204ENST00000526054 CXCL13O43927 109 aa9.05□□□□□ -0.96
VPS28-204ENST00000526054 FMO6PO60774 539 aa9.05□□□□□ -0.96
VPS28-204ENST00000526054 TGM6O95932 706 aa9.05□□□□□ -0.96
VPS28-204ENST00000526054 INHBBP09529 407 aa9.05□□□□□ -0.96
VPS28-204ENST00000526054 GGT1P19440 569 aa9.05□□□□□ -0.96
VPS28-204ENST00000526054 CCNA2P20248 432 aa9.05□□□□□ -0.96
VPS28-204ENST00000526054 SHC1P29353 583 aa9.05□□□□□ -0.96
VPS28-204ENST00000526054 HOXC12P31275 282 aa9.05□□□□□ -0.96
VPS28-204ENST00000526054 CLK1P49759 484 aaKnown RBP9.05□□□□□ -0.96
VPS28-204ENST00000526054 CRYBA2P53672 197 aa9.05□□□□□ -0.96
VPS28-204ENST00000526054 TPD52P55327 224 aaPredicted RBP9.05□□□□□ -0.96
VPS28-204ENST00000526054 CARD18P57730 90 aa9.05□□□□□ -0.96
VPS28-204ENST00000526054 CSNK2A1P68400 391 aaPredicted RBP9.05□□□□□ -0.96
VPS28-204ENST00000526054 NKX6-1P78426 367 aaPredicted RBP9.05□□□□□ -0.96
VPS28-204ENST00000526054 HOXC5Q00444 222 aa9.05□□□□□ -0.96
VPS28-204ENST00000526054 PON3Q15166 354 aa9.05□□□□□ -0.96
VPS28-204ENST00000526054 ELOA3BQ3SY89 546 aa9.05□□□□□ -0.96
VPS28-204ENST00000526054 OR2A2Q6IF42 318 aa9.05□□□□□ -0.96
VPS28-204ENST00000526054 CARM1Q86X55 608 aa9.05□□□□□ -0.96
VPS28-204ENST00000526054 ADGRG3Q86Y34 549 aa9.05□□□□□ -0.96
VPS28-204ENST00000526054 KRTAP1-3Q8IUG1 177 aa9.05□□□□□ -0.96
VPS28-204ENST00000526054 RNF148Q8N7C7 305 aa9.05□□□□□ -0.96
VPS28-204ENST00000526054 LSMEM1Q8N8F7 131 aa9.05□□□□□ -0.96
VPS28-204ENST00000526054 ELOA3Q8NG57 546 aa9.05□□□□□ -0.96
VPS28-204ENST00000526054 VANGL1Q8TAA9 524 aaPredicted RBP9.05□□□□□ -0.96
VPS28-204ENST00000526054 DNAJA4Q8WW22 397 aaPredicted RBP9.05□□□□□ -0.96
VPS28-204ENST00000526054 CPNE4Q96A23 557 aaPredicted RBP9.05□□□□□ -0.96
VPS28-204ENST00000526054 C3orf49Q96BT1 292 aa9.05□□□□□ -0.96
VPS28-204ENST00000526054 ZNF845Q96IR2 970 aaPredicted RBP9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms