RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 KPNA4O00629 521 aaPredicted RBP13.76□□□□□ -0.21
LSM1-203ENST00000520755 LRRTM2O43300 516 aa13.76□□□□□ -0.21
LSM1-203ENST00000520755 ZNF208O43345 1280 aa13.76□□□□□ -0.21
LSM1-203ENST00000520755 CPN1P15169 458 aa13.76□□□□□ -0.21
LSM1-203ENST00000520755 FPR1P21462 350 aa13.76□□□□□ -0.21
LSM1-203ENST00000520755 CXCR1P25024 350 aa13.76□□□□□ -0.21
LSM1-203ENST00000520755 SFTPDP35247 375 aa13.76□□□□□ -0.21
LSM1-203ENST00000520755 RBM34P42696 430 aaKnown RBP13.76□□□□□ -0.21
LSM1-203ENST00000520755 SUCLG1P53597 346 aaKnown RBP13.76□□□□□ -0.21
LSM1-203ENST00000520755 TPD52P55327 224 aaPredicted RBP13.76□□□□□ -0.21
LSM1-203ENST00000520755 CLDN15P56746 228 aa13.76□□□□□ -0.21
LSM1-203ENST00000520755 CLDN20P56880 219 aa13.76□□□□□ -0.21
LSM1-203ENST00000520755 RIPK1Q13546 671 aa13.76□□□□□ -0.21
LSM1-203ENST00000520755 CTU2Q2VPK5 515 aaKnown RBP13.76□□□□□ -0.21
LSM1-203ENST00000520755 ANKRD34AQ69YU3 496 aa13.76□□□□□ -0.21
LSM1-203ENST00000520755 FJX1Q86VR8 437 aa13.76□□□□□ -0.21
LSM1-203ENST00000520755 MEX3DQ86XN8 651 aaKnown RBP13.76□□□□□ -0.21
LSM1-203ENST00000520755 MEIOBQ8N635 442 aa13.76□□□□□ -0.21
LSM1-203ENST00000520755 OR4K5Q8NGD3 323 aa13.76□□□□□ -0.21
LSM1-203ENST00000520755 OR9Q2Q8NGE9 314 aa13.76□□□□□ -0.21
LSM1-203ENST00000520755 TMEM239Q8WW34 195 aa13.76□□□□□ -0.21
LSM1-203ENST00000520755 KTI12Q96EK9 354 aaPredicted RBP13.76□□□□□ -0.21
LSM1-203ENST00000520755 DNAJA3Q96EY1 480 aa13.76□□□□□ -0.21
LSM1-203ENST00000520755 CENPNQ96H22 339 aaPredicted RBP13.76□□□□□ -0.21
LSM1-203ENST00000520755 ARL5BQ96KC2 179 aa13.76□□□□□ -0.21
LSM1-203ENST00000520755 TMEM43Q9BTV4 400 aa13.76□□□□□ -0.21
LSM1-203ENST00000520755 DCLRE1BQ9H816 532 aa13.76□□□□□ -0.21
LSM1-203ENST00000520755 COQ10BQ9H8M1 238 aa13.76□□□□□ -0.21
LSM1-203ENST00000520755 C20orf141Q9NUB4 165 aa13.76□□□□□ -0.21
LSM1-203ENST00000520755 SELENONQ9NZV5 590 aa13.76□□□□□ -0.21
LSM1-203ENST00000520755 STX18Q9P2W9 335 aaKnown RBP13.76□□□□□ -0.21
LSM1-203ENST00000520755 STOML1Q9UBI4 398 aa13.76□□□□□ -0.21
LSM1-203ENST00000520755 RP1L1Q8IWN7 2480 aaPredicted RBP13.76□□□□□ -0.21
LSM1-203ENST00000520755 SAC3D1A6NKF1 404 aa13.75□□□□□ -0.21
LSM1-203ENST00000520755 EIF1AYO14602 144 aaKnown RBP13.75□□□□□ -0.21
LSM1-203ENST00000520755 WDR1O75083 606 aa13.75□□□□□ -0.21
LSM1-203ENST00000520755 ATP6V1G2O95670 118 aa13.75□□□□□ -0.21
LSM1-203ENST00000520755 BAG2O95816 211 aa13.75□□□□□ -0.21
LSM1-203ENST00000520755 ACVR2AP27037 513 aa13.75□□□□□ -0.21
LSM1-203ENST00000520755 DNAJA1P31689 397 aaKnown RBP13.75□□□□□ -0.21
LSM1-203ENST00000520755 IFNA8P32881 189 aa13.75□□□□□ -0.21
LSM1-203ENST00000520755 SMIM11AP58511 58 aa13.75□□□□□ -0.21
LSM1-203ENST00000520755 RAC1P63000 192 aa13.75□□□□□ -0.21
LSM1-203ENST00000520755 BCL2A1Q16548 175 aa13.75□□□□□ -0.21
LSM1-203ENST00000520755 SYT14P1Q58G82 188 aa13.75□□□□□ -0.21
LSM1-203ENST00000520755 SHQ1Q6PI26 577 aaKnown RBP13.75□□□□□ -0.21
LSM1-203ENST00000520755 ZNF730Q6ZMV8 503 aa13.75□□□□□ -0.21
LSM1-203ENST00000520755 MBOAT2Q6ZWT7 520 aa13.75□□□□□ -0.21
LSM1-203ENST00000520755 NRMQ8IXM6 262 aa13.75□□□□□ -0.21
LSM1-203ENST00000520755 ADGRG7Q96K78 797 aa13.75□□□□□ -0.21
LSM1-203ENST00000520755 TUBA1CQ9BQE3 449 aa13.75□□□□□ -0.21
LSM1-203ENST00000520755 BDH2Q9BUT1 245 aa13.75□□□□□ -0.21
LSM1-203ENST00000520755 SERINC1Q9NRX5 453 aa13.75□□□□□ -0.21
LSM1-203ENST00000520755 C6orf203Q9P0P8 240 aaPredicted RBP13.75□□□□□ -0.21
LSM1-203ENST00000520755 OAZ3Q9UMX2 235 aa13.75□□□□□ -0.21
LSM1-203ENST00000520755 A0A1B0GUH1 482 aa13.74□□□□□ -0.21
LSM1-203ENST00000520755 ENO4A6NNW6 628 aa13.74□□□□□ -0.21
LSM1-203ENST00000520755 A8MVM7 634 aa13.74□□□□□ -0.21
LSM1-203ENST00000520755 AHRRA9YTQ3 701 aa13.74□□□□□ -0.21
LSM1-203ENST00000520755 LRRN3E7EW58 273 aa13.74□□□□□ -0.21
LSM1-203ENST00000520755 GNGT2O14610 69 aa13.74□□□□□ -0.21
LSM1-203ENST00000520755 TNFSF11O14788 317 aa13.74□□□□□ -0.21
LSM1-203ENST00000520755 FZD7O75084 574 aa13.74□□□□□ -0.21
LSM1-203ENST00000520755 E2F6O75461 281 aa13.74□□□□□ -0.21
LSM1-203ENST00000520755 IMPDH2P12268 514 aa13.74□□□□□ -0.21
LSM1-203ENST00000520755 GABRA1P14867 456 aa13.74□□□□□ -0.21
LSM1-203ENST00000520755 OMPP47874 163 aa13.74□□□□□ -0.21
LSM1-203ENST00000520755 LTBQ06643 244 aa13.74□□□□□ -0.21
LSM1-203ENST00000520755 GK3PQ14409 553 aa13.74□□□□□ -0.21
LSM1-203ENST00000520755 MICAQ29983 383 aa13.74□□□□□ -0.21
LSM1-203ENST00000520755 TMEM176BQ3YBM2 270 aaPredicted RBP13.74□□□□□ -0.21
LSM1-203ENST00000520755 C4orf17Q53FE4 359 aa13.74□□□□□ -0.21
LSM1-203ENST00000520755 C1orf185Q5T7R7 199 aa13.74□□□□□ -0.21
LSM1-203ENST00000520755 C1orf140Q5VVS0 124 aa13.74□□□□□ -0.21
LSM1-203ENST00000520755 PGBD2Q6P3X8 592 aa13.74□□□□□ -0.21
LSM1-203ENST00000520755 TTC33Q6PID6 262 aaPredicted RBP13.74□□□□□ -0.21
LSM1-203ENST00000520755 NCCRP1Q6ZVX7 275 aaPredicted RBP13.74□□□□□ -0.21
LSM1-203ENST00000520755 CHMP1BQ7LBR1 199 aa13.74□□□□□ -0.21
LSM1-203ENST00000520755 SLC46A3Q7Z3Q1 461 aa13.74□□□□□ -0.21
LSM1-203ENST00000520755 RPRMLQ8N4K4 120 aa13.74□□□□□ -0.21
LSM1-203ENST00000520755 ICA1LQ8NDH6 482 aa13.74□□□□□ -0.21
LSM1-203ENST00000520755 OR5K1Q8NHB7 308 aa13.74□□□□□ -0.21
LSM1-203ENST00000520755 STK35Q8TDR2 534 aa13.74□□□□□ -0.21
LSM1-203ENST00000520755 SLC25A43Q8WUT9 341 aaPredicted RBP13.74□□□□□ -0.21
LSM1-203ENST00000520755 KLHL15Q96M94 604 aa13.74□□□□□ -0.21
LSM1-203ENST00000520755 TRIB1Q96RU8 372 aa13.74□□□□□ -0.21
LSM1-203ENST00000520755 GPA33Q99795 319 aa13.74□□□□□ -0.21
LSM1-203ENST00000520755 PSD2Q9BQI7 771 aa13.74□□□□□ -0.21
LSM1-203ENST00000520755 SLC19A3Q9BZV2 496 aa13.74□□□□□ -0.21
LSM1-203ENST00000520755 GABARAPL1Q9H0R8 117 aa13.74□□□□□ -0.21
LSM1-203ENST00000520755 MEMO1Q9Y316 297 aa13.74□□□□□ -0.21
LSM1-203ENST00000520755 SPIN1Q9Y657 262 aaPredicted RBP13.74□□□□□ -0.21
LSM1-203ENST00000520755 POLEQ07864 2286 aa13.74□□□□□ -0.21
LSM1-203ENST00000520755 MYO7BQ6PIF6 2116 aa13.73□□□□□ -0.21
LSM1-203ENST00000520755 DOCK7Q96N67 2140 aa13.73□□□□□ -0.21
LSM1-203ENST00000520755 A0A0J9YW62 118 aa13.73□□□□□ -0.21
LSM1-203ENST00000520755 A0A1W2PNR3 127 aa13.73□□□□□ -0.21
LSM1-203ENST00000520755 ARRDC5A6NEK1 342 aa13.73□□□□□ -0.21
LSM1-203ENST00000520755 GJE1A6NN92 205 aa13.73□□□□□ -0.21
LSM1-203ENST00000520755 KDM4EB2RXH2 506 aaPredicted RBP13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms