RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 OGG1O15527 345 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 SC5DO75845 299 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 CDRT1O95170 752 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 MT-ND5P03915 603 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 OR2T7P0C7T2 308 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 ASAH2BP0C7U1 165 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 CSRP1P21291 193 aaKnown RBP9.81□□□□□ -0.84
USP4-214ENST00000491791 UQCRC1P31930 480 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 HOXD12P35452 270 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 ATP6V1E1P36543 226 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 CD79BP40259 229 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 MTNR1BP49286 362 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 EFNA3P52797 238 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 HSF2Q03933 536 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 LGALS3BPQ08380 585 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 RIN1Q13671 783 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 ATP1A4Q13733 1029 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 CRMP1Q14194 572 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 CD226Q15762 336 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 GLYR1Q49A26 553 aaPredicted RBP9.81□□□□□ -0.84
USP4-214ENST00000491791 CRTC2Q53ET0 693 aaPredicted RBP9.81□□□□□ -0.84
USP4-214ENST00000491791 EMC4Q5J8M3 183 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 LCN1P1Q5VSP4 162 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 LYSMD4Q5XG99 296 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 STEAP3Q658P3 488 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 APOOLQ6UXV4 268 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 TMEM91Q6ZNR0 172 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 COX15Q7KZN9 410 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 BPHLQ86WA6 291 aaPredicted RBP9.81□□□□□ -0.84
USP4-214ENST00000491791 METTL27Q8N6F8 245 aaPredicted RBP9.81□□□□□ -0.84
USP4-214ENST00000491791 ZNF614Q8N883 585 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 NPEPL1Q8NDH3 523 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 OR4D9Q8NGE8 314 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 OR51G2Q8NGK0 314 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 OR5M3Q8NGP4 307 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 OR2T27Q8NH04 317 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 OR51A7Q8NH64 312 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 RNF138Q8WVD3 245 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 ASB15Q8WXK1 588 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 PIGKQ92643 395 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 TSLPQ969D9 159 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 ARSGQ96EG1 525 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 ALG8Q9BVK2 526 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 WWTR1Q9GZV5 400 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 KCNN2Q9H2S1 579 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 TRIM36Q9NQ86 728 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 PNO1Q9NRX1 252 aaKnown RBP9.81□□□□□ -0.84
USP4-214ENST00000491791 FGF21Q9NSA1 209 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 WDR70Q9NW82 654 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 PCDHGB7Q9Y5F8 929 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 MAU2Q9Y6X3 613 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 U3KQA8 63 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 V9GYH0 126 aa9.81□□□□□ -0.84
USP4-214ENST00000491791 FRYQ5TBA9 3013 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 DAPL1A0PJW8 107 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 FAM183AA6NL82 134 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 GTPBP1O00178 669 aaKnown RBP9.8□□□□□ -0.84
USP4-214ENST00000491791 ADAM10O14672 748 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 RNF13O43567 381 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 CDC40O60508 579 aaKnown RBP eCLIP9.8□□□□□ -0.84
USP4-214ENST00000491791 TMEM127O75204 238 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 PPP1R3DO95685 299 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 CELP19835 753 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 ALAS2P22557 587 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 F8A1P23610 371 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 SDC2P34741 201 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 RFX3P48380 749 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 DEFA1P59665 94 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 DEFA3P59666 94 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 ZNF85Q03923 595 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 NR0B2Q15466 257 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 ZNF74Q16587 644 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 ZNF791Q3KP31 576 aaPredicted RBP9.8□□□□□ -0.84
USP4-214ENST00000491791 CCDC58Q4VC31 144 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 TRIM61Q5EBN2 209 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 PERM1Q5SV97 790 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 SLC35F1Q5T1Q4 408 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 DMKNQ6E0U4 476 aaPredicted RBP9.8□□□□□ -0.84
USP4-214ENST00000491791 C22orf42Q6IC83 251 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 XKRXQ6PP77 449 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 ZNF574Q6ZN55 896 aaPredicted RBP9.8□□□□□ -0.84
USP4-214ENST00000491791 PXKQ7Z7A4 578 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 TPRA1Q86W33 373 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 MISPQ8IVT2 679 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 C9orf40Q8IXQ3 194 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 CADM2Q8N3J6 435 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 MS4A15Q8N5U1 240 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 ZNF321PQ8N8H1 164 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 GDPD1Q8N9F7 314 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 EXD3Q8N9H8 876 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 ATP6V1C2Q8NEY4 427 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 OR6S1Q8NH40 331 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 OR8K3Q8NH51 312 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 RPS4Y2Q8TD47 263 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 HAVCR2Q8TDQ0 301 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 ZDHHC19Q8WVZ1 309 aaPredicted RBP9.8□□□□□ -0.84
USP4-214ENST00000491791 ACOT12Q8WYK0 555 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 PHYHIPQ92561 330 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 CCDC74AQ96AQ1 378 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 KCTD12Q96CX2 325 aaKnown RBP9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms