RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 WHAMMP3Q1A5X7 153 aa12.12□□□□□ -0.47
VARS-227ENST00000489979 TBRG1Q3YBR2 411 aa12.12□□□□□ -0.47
VARS-227ENST00000489979 IL23RQ5VWK5 629 aa12.12□□□□□ -0.47
VARS-227ENST00000489979 TYW3Q6IPR3 259 aaKnown RBP12.12□□□□□ -0.47
VARS-227ENST00000489979 AAED1Q7RTV5 226 aa12.12□□□□□ -0.47
VARS-227ENST00000489979 ARFGAP2Q8N6H7 521 aa12.12□□□□□ -0.47
VARS-227ENST00000489979 ZIC4Q8N9L1 334 aa12.12□□□□□ -0.47
VARS-227ENST00000489979 POMGNT2Q8NAT1 580 aa12.12□□□□□ -0.47
VARS-227ENST00000489979 SEMA6DQ8NFY4 1073 aa12.12□□□□□ -0.47
VARS-227ENST00000489979 ZFAND2BQ8WV99 257 aa12.12□□□□□ -0.47
VARS-227ENST00000489979 DDIT4LQ96D03 193 aa12.12□□□□□ -0.47
VARS-227ENST00000489979 ZG16BQ96DA0 208 aa12.12□□□□□ -0.47
VARS-227ENST00000489979 AURKBQ96GD4 344 aaPredicted RBP12.12□□□□□ -0.47
VARS-227ENST00000489979 BOD1Q96IK1 185 aa12.12□□□□□ -0.47
VARS-227ENST00000489979 ZNF385AQ96PM9 386 aaKnown RBP12.12□□□□□ -0.47
VARS-227ENST00000489979 OR51I1Q9H343 314 aa12.12□□□□□ -0.47
VARS-227ENST00000489979 METTL17Q9H7H0 456 aaPredicted RBP12.12□□□□□ -0.47
VARS-227ENST00000489979 EXD2Q9NVH0 621 aa12.12□□□□□ -0.47
VARS-227ENST00000489979 PCDHGB4Q9UN71 923 aa12.12□□□□□ -0.47
VARS-227ENST00000489979 TMED7Q9Y3B3 224 aa12.12□□□□□ -0.47
VARS-227ENST00000489979 WDR45Q9Y484 360 aa12.12□□□□□ -0.47
VARS-227ENST00000489979 A0A0A6YYJ9 748 aa12.11□□□□□ -0.47
VARS-227ENST00000489979 CLDN24A6NM45 220 aa12.11□□□□□ -0.47
VARS-227ENST00000489979 SLCO1B7G3V0H7 640 aa12.11□□□□□ -0.47
VARS-227ENST00000489979 hCG_2039718K7EN88 272 aa12.11□□□□□ -0.47
VARS-227ENST00000489979 ZNF208O43345 1280 aa12.11□□□□□ -0.47
VARS-227ENST00000489979 LGI1O95970 557 aa12.11□□□□□ -0.47
VARS-227ENST00000489979 CECR9P0C854 216 aa12.11□□□□□ -0.47
VARS-227ENST00000489979 OR12D1P0DN82 309 aa12.11□□□□□ -0.47
VARS-227ENST00000489979 PRPS1L1P21108 318 aa12.11□□□□□ -0.47
VARS-227ENST00000489979 CALCRP30988 508 aa12.11□□□□□ -0.47
VARS-227ENST00000489979 SLC1A3P43003 542 aa12.11□□□□□ -0.47
VARS-227ENST00000489979 HTR3AP46098 478 aa12.11□□□□□ -0.47
VARS-227ENST00000489979 DVL1P1P54792 670 aaPredicted RBP12.11□□□□□ -0.47
VARS-227ENST00000489979 UBE2NP61088 152 aaKnown RBP12.11□□□□□ -0.47
VARS-227ENST00000489979 ACTG1P63261 375 aa12.11□□□□□ -0.47
VARS-227ENST00000489979 TUBA1BP68363 451 aa12.11□□□□□ -0.47
VARS-227ENST00000489979 TUBA4AP68366 448 aa12.11□□□□□ -0.47
VARS-227ENST00000489979 PLAURQ03405 335 aa12.11□□□□□ -0.47
VARS-227ENST00000489979 CCNIQ14094 377 aa12.11□□□□□ -0.47
VARS-227ENST00000489979 PCLAFQ15004 111 aa12.11□□□□□ -0.47
VARS-227ENST00000489979 FAM153CQ494X1 144 aa12.11□□□□□ -0.47
VARS-227ENST00000489979 ATP6AP1LQ52LC2 224 aa12.11□□□□□ -0.47
VARS-227ENST00000489979 OTUD3Q5T2D3 398 aaPredicted RBP12.11□□□□□ -0.47
VARS-227ENST00000489979 ANKRD16Q6P6B7 361 aa12.11□□□□□ -0.47
VARS-227ENST00000489979 PAQR6Q6TCH4 344 aa12.11□□□□□ -0.47
VARS-227ENST00000489979 TUBA1AQ71U36 451 aa12.11□□□□□ -0.47
VARS-227ENST00000489979 RIMKLAQ8IXN7 391 aa12.11□□□□□ -0.47
VARS-227ENST00000489979 CLECL1Q8IZS7 167 aa12.11□□□□□ -0.47
VARS-227ENST00000489979 CNPY4Q8N129 248 aa12.11□□□□□ -0.47
VARS-227ENST00000489979 ZNF786Q8N393 782 aa12.11□□□□□ -0.47
VARS-227ENST00000489979 TMEM99Q8N816 258 aa12.11□□□□□ -0.47
VARS-227ENST00000489979 OR9K2Q8NGE7 335 aa12.11□□□□□ -0.47
VARS-227ENST00000489979 OR1K1Q8NGR3 316 aa12.11□□□□□ -0.47
VARS-227ENST00000489979 XAGE5Q8WWM1 108 aa12.11□□□□□ -0.47
VARS-227ENST00000489979 NEU4Q8WWR8 484 aaPredicted RBP12.11□□□□□ -0.47
VARS-227ENST00000489979 ZMYND19Q96E35 227 aaPredicted RBP12.11□□□□□ -0.47
VARS-227ENST00000489979 C3orf30Q96M34 536 aa12.11□□□□□ -0.47
VARS-227ENST00000489979 SEC61A2Q9H9S3 476 aa12.11□□□□□ -0.47
VARS-227ENST00000489979 EXOSC3Q9NQT5 275 aaKnown RBP12.11□□□□□ -0.47
VARS-227ENST00000489979 TMEM45AQ9NWC5 275 aa12.11□□□□□ -0.47
VARS-227ENST00000489979 CRNNQ9UBG3 495 aaPredicted RBP12.11□□□□□ -0.47
VARS-227ENST00000489979 OSGIN1Q9UJX0 560 aa12.11□□□□□ -0.47
VARS-227ENST00000489979 FBXO9Q9UK97 447 aaPredicted RBP12.11□□□□□ -0.47
VARS-227ENST00000489979 PCDHB14Q9Y5E9 798 aa12.11□□□□□ -0.47
VARS-227ENST00000489979 ZC3H12DA2A288 527 aaKnown RBP12.1□□□□□ -0.47
VARS-227ENST00000489979 NR5A2O00482 541 aa12.1□□□□□ -0.47
VARS-227ENST00000489979 COPEO14579 308 aa12.1□□□□□ -0.47
VARS-227ENST00000489979 AP3D1O14617 1153 aa12.1□□□□□ -0.47
VARS-227ENST00000489979 TRIM13O60858 407 aa12.1□□□□□ -0.47
VARS-227ENST00000489979 KRT33AO76009 404 aa12.1□□□□□ -0.47
VARS-227ENST00000489979 AKR7A3O95154 331 aa12.1□□□□□ -0.47
VARS-227ENST00000489979 ERCC1P07992 297 aaPredicted RBP12.1□□□□□ -0.47
VARS-227ENST00000489979 GUSBP08236 651 aa12.1□□□□□ -0.47
VARS-227ENST00000489979 IFNGR1P15260 489 aa12.1□□□□□ -0.47
VARS-227ENST00000489979 PCMT1P22061 227 aa12.1□□□□□ -0.47
VARS-227ENST00000489979 COMPP49747 757 aaPredicted RBP12.1□□□□□ -0.47
VARS-227ENST00000489979 POLR2HP52434 150 aaKnown RBP12.1□□□□□ -0.47
VARS-227ENST00000489979 KCNJ10P78508 379 aa12.1□□□□□ -0.47
VARS-227ENST00000489979 LGALS3BPQ08380 585 aa12.1□□□□□ -0.47
VARS-227ENST00000489979 FUT5Q11128 374 aa12.1□□□□□ -0.47
VARS-227ENST00000489979 RIN1Q13671 783 aa12.1□□□□□ -0.47
VARS-227ENST00000489979 PGS1Q32NB8 556 aa12.1□□□□□ -0.47
VARS-227ENST00000489979 XKR7Q5GH72 579 aa12.1□□□□□ -0.47
VARS-227ENST00000489979 C6orf136Q5SQH8 315 aa12.1□□□□□ -0.47
VARS-227ENST00000489979 ATAD3BQ5T9A4 648 aa12.1□□□□□ -0.47
VARS-227ENST00000489979 AP1ARQ63HQ0 302 aa12.1□□□□□ -0.47
VARS-227ENST00000489979 TNFAIP8L2Q6P589 184 aaPredicted RBP12.1□□□□□ -0.47
VARS-227ENST00000489979 FRRS1Q6ZNA5 592 aa12.1□□□□□ -0.47
VARS-227ENST00000489979 ABHD12BQ7Z5M8 362 aaPredicted RBP12.1□□□□□ -0.47
VARS-227ENST00000489979 SVOPLQ8N434 492 aa12.1□□□□□ -0.47
VARS-227ENST00000489979 C3orf56Q8N813 242 aa12.1□□□□□ -0.47
VARS-227ENST00000489979 FNDC5Q8NAU1 212 aa12.1□□□□□ -0.47
VARS-227ENST00000489979 OR4F15Q8NGB8 312 aa12.1□□□□□ -0.47
VARS-227ENST00000489979 SGMS2Q8NHU3 365 aa12.1□□□□□ -0.47
VARS-227ENST00000489979 AGR3Q8TD06 166 aa12.1□□□□□ -0.47
VARS-227ENST00000489979 MIPOL1Q8TD10 442 aa12.1□□□□□ -0.47
VARS-227ENST00000489979 UBASH3BQ8TF42 649 aa12.1□□□□□ -0.47
VARS-227ENST00000489979 WDR60Q8WVS4 1066 aa12.1□□□□□ -0.47
VARS-227ENST00000489979 OIT3Q8WWZ8 545 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms