RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 PHF10Q8WUB8 498 aaKnown RBP4.61□□□□□ -1.67
USP40-213ENST00000483216 PCNPQ8WW12 178 aaKnown RBP4.61□□□□□ -1.67
USP40-213ENST00000483216 FAF2Q96CS3 445 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 RCHY1Q96PM5 261 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 COQ7Q99807 217 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 CCDC32Q9BV29 185 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 TEKT3Q9BXF9 490 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 TEX13BQ9BXU2 312 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 TMEM117Q9H0C3 514 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 RACGAP1Q9H0H5 632 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 SIAEQ9HAT2 523 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 INIPQ9NRY2 104 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 MED17Q9NVC6 651 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 FAM120CQ9NX05 1096 aaKnown RBP4.61□□□□□ -1.67
USP40-213ENST00000483216 SCN3BQ9NY72 215 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 ZNF581Q9P0T4 197 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 SLC17A7Q9P2U7 560 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 PCSK1NQ9UHG2 260 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 GLS2Q9UI32 602 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 DNPEPQ9ULA0 475 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 TDRKHQ9Y2W6 561 aaKnown RBP4.61□□□□□ -1.67
USP40-213ENST00000483216 NDUFAF1Q9Y375 327 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 TPRKBQ9Y3C4 175 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 TEX264Q9Y6I9 313 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 MYH4Q9Y623 1939 aa4.61□□□□□ -1.67
USP40-213ENST00000483216 ADAMTSL1Q8N6G6 1762 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 SCN4AP35499 1836 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 hCG_1818297A0A087WSY0 165 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 A0A1B0GW55 424 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 ZNF840PA6NDX5 716 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 FAM159BA6NKW6 160 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 SNTNA6NMZ2 147 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 EEF2KO00418 725 aaKnown RBP4.6□□□□□ -1.67
USP40-213ENST00000483216 AIM2O14862 343 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 PHF1O43189 567 aaPredicted RBP4.6□□□□□ -1.67
USP40-213ENST00000483216 SLC37A4O43826 429 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 CCNKO75909 580 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 SRP72O76094 671 aaKnown RBP4.6□□□□□ -1.67
USP40-213ENST00000483216 LYPLA2O95372 231 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 TDP2O95551 362 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 SEMA4FO95754 770 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 MT-ND1P03886 318 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 IFNA16P05015 189 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 DUX4L2P0CJ85 424 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 DUX4L3P0CJ86 424 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 DUX4L4P0CJ87 422 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 DUX4L5P0CJ88 424 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 DUX4L6P0CJ89 424 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 DUX4L7P0CJ90 424 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 ERP29P30040 261 aaKnown RBP4.6□□□□□ -1.67
USP40-213ENST00000483216 SFNP31947 248 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 ELK3P41970 407 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 CCR4P51679 360 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 NDST1P52848 882 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 AP2S1P53680 142 aaPredicted RBP4.6□□□□□ -1.67
USP40-213ENST00000483216 GPX6P59796 221 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 EIF3EP60228 445 aaKnown RBP4.6□□□□□ -1.67
USP40-213ENST00000483216 CXCR4P61073 352 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 ST8SIA6P61647 398 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 FKBP1AP62942 108 aaKnown RBP4.6□□□□□ -1.67
USP40-213ENST00000483216 S100A12P80511 92 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 MRPS22P82650 360 aaKnown RBP4.6□□□□□ -1.67
USP40-213ENST00000483216 SCRN3Q0VDG4 424 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 BAMBIQ13145 260 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 PDK1Q15118 436 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 SNRNP35Q16560 246 aaKnown RBP4.6□□□□□ -1.67
USP40-213ENST00000483216 ACKR1Q16570 336 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 SLC36A3Q495N2 470 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 SPANXN3Q5MJ09 141 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 SPANXN2Q5MJ10 180 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 GPR107Q5VW38 600 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 TIGD3Q6B0B8 471 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 ANKRD26P1Q6NSI1 321 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 CDC42EP5Q6NZY7 148 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 LUZP2Q86TE4 346 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 ADAMTSL2Q86TH1 951 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 PLCZ1Q86YW0 608 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 C8orf59Q8N0T1 100 aaPredicted RBP4.6□□□□□ -1.67
USP40-213ENST00000483216 SVOPLQ8N434 492 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 ARL10Q8N8L6 244 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 CLEC1AQ8NC01 280 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 OR4Q3Q8NH05 313 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 ATP6V1E2Q96A05 226 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 SH3YL1Q96HL8 342 aaPredicted RBP4.6□□□□□ -1.67
USP40-213ENST00000483216 CDKN2AIPNLQ96HQ2 116 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 EBNA1BP2Q99848 306 aaKnown RBP4.6□□□□□ -1.67
USP40-213ENST00000483216 HSD17B14Q9BPX1 270 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 ZNF559Q9BR84 538 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 DCUN1D5Q9BTE7 237 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 UGT2B28Q9BY64 529 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 ZNF350Q9GZX5 532 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 IL22Q9GZX6 179 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 ZNF665Q9H7R5 613 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 VAT1LQ9HCJ6 419 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 PAK1IP1Q9NWT1 392 aaPredicted RBP4.6□□□□□ -1.67
USP40-213ENST00000483216 USE1Q9NZ43 259 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 PTTG3PQ9NZH4 202 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 ADA2Q9NZK5 511 aa4.6□□□□□ -1.67
USP40-213ENST00000483216 CCDC59Q9P031 241 aaKnown RBP4.6□□□□□ -1.67
USP40-213ENST00000483216 DUX4Q9UBX2 424 aa4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms