RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 ANP32DO95626 131 aa16.35■□□□□ 0.21
COL7A1-209ENST00000474432 ITGA5P08648 1049 aa16.35■□□□□ 0.21
COL7A1-209ENST00000474432 GGT1P19440 569 aa16.35■□□□□ 0.21
COL7A1-209ENST00000474432 CRISP3P54108 245 aa16.35■□□□□ 0.21
COL7A1-209ENST00000474432 SLC35A1P78382 337 aa16.35■□□□□ 0.21
COL7A1-209ENST00000474432 PGGHGQ32M88 737 aa16.35■□□□□ 0.21
COL7A1-209ENST00000474432 LIN52Q52LA3 116 aa16.35■□□□□ 0.21
COL7A1-209ENST00000474432 C6orf10Q5SRN2 563 aa16.35■□□□□ 0.21
COL7A1-209ENST00000474432 PAQR6Q6TCH4 344 aa16.35■□□□□ 0.21
COL7A1-209ENST00000474432 CLEC9AQ6UXN8 241 aa16.35■□□□□ 0.21
COL7A1-209ENST00000474432 P2RY8Q86VZ1 359 aa16.35■□□□□ 0.21
COL7A1-209ENST00000474432 ZIC4Q8N9L1 334 aa16.35■□□□□ 0.21
COL7A1-209ENST00000474432 DDIT4LQ96D03 193 aa16.35■□□□□ 0.21
COL7A1-209ENST00000474432 BCL2L10Q9HD36 194 aa16.35■□□□□ 0.21
COL7A1-209ENST00000474432 CALML5Q9NZT1 146 aa16.35■□□□□ 0.21
COL7A1-209ENST00000474432 A0A0G2JPF8 293 aa16.34■□□□□ 0.21
COL7A1-209ENST00000474432 HNRNPCL2B2RXH8 293 aa16.34■□□□□ 0.21
COL7A1-209ENST00000474432 HNRNPCL3B7ZW38 293 aa16.34■□□□□ 0.21
COL7A1-209ENST00000474432 CLIC1O00299 241 aa16.34■□□□□ 0.21
COL7A1-209ENST00000474432 EIF1BO60739 113 aaKnown RBP16.34■□□□□ 0.21
COL7A1-209ENST00000474432 HNRNPCL1O60812 293 aaKnown RBP16.34■□□□□ 0.21
COL7A1-209ENST00000474432 NPIPB7O75200 414 aa16.34■□□□□ 0.21
COL7A1-209ENST00000474432 MRPL33O75394 65 aaKnown RBP16.34■□□□□ 0.21
COL7A1-209ENST00000474432 RAD51DO75771 328 aa16.34■□□□□ 0.21
COL7A1-209ENST00000474432 TGDSO95455 350 aa16.34■□□□□ 0.21
COL7A1-209ENST00000474432 CD8AP01732 235 aa16.34■□□□□ 0.21
COL7A1-209ENST00000474432 HEXAP06865 529 aa16.34■□□□□ 0.21
COL7A1-209ENST00000474432 HNRNPCL4P0DMR1 293 aa16.34■□□□□ 0.21
COL7A1-209ENST00000474432 P2RY4P51582 365 aa16.34■□□□□ 0.21
COL7A1-209ENST00000474432 BNIP2Q12982 314 aa16.34■□□□□ 0.21
COL7A1-209ENST00000474432 GABRA6Q16445 453 aa16.34■□□□□ 0.21
COL7A1-209ENST00000474432 LRIF1Q5T3J3 769 aa16.34■□□□□ 0.21
COL7A1-209ENST00000474432 BLOC1S3Q6QNY0 202 aa16.34■□□□□ 0.21
COL7A1-209ENST00000474432 SERPINA11Q86U17 422 aa16.34■□□□□ 0.21
COL7A1-209ENST00000474432 TMEM99Q8N816 258 aa16.34■□□□□ 0.21
COL7A1-209ENST00000474432 OR52E4Q8NGH9 312 aa16.34■□□□□ 0.21
COL7A1-209ENST00000474432 SMAP2Q8WU79 429 aaPredicted RBP16.34■□□□□ 0.21
COL7A1-209ENST00000474432 MAL2Q969L2 176 aa16.34■□□□□ 0.21
COL7A1-209ENST00000474432 FBXW5Q969U6 566 aa16.34■□□□□ 0.21
COL7A1-209ENST00000474432 ATP6V1G3Q96LB4 118 aa16.34■□□□□ 0.21
COL7A1-209ENST00000474432 MUS81Q96NY9 551 aa16.34■□□□□ 0.21
COL7A1-209ENST00000474432 BDH2Q9BUT1 245 aa16.34■□□□□ 0.21
COL7A1-209ENST00000474432 SPATA9Q9BWV2 254 aa16.34■□□□□ 0.21
COL7A1-209ENST00000474432 AMBRA1Q9C0C7 1298 aa16.34■□□□□ 0.21
COL7A1-209ENST00000474432 CXorf56Q9H5V9 222 aa16.34■□□□□ 0.21
COL7A1-209ENST00000474432 A4GALTQ9NPC4 353 aa16.34■□□□□ 0.21
COL7A1-209ENST00000474432 TCF7L2Q9NQB0 619 aa16.34■□□□□ 0.21
COL7A1-209ENST00000474432 SLC7A10Q9NS82 523 aa16.34■□□□□ 0.21
COL7A1-209ENST00000474432 PRDM4Q9UKN5 801 aa16.34■□□□□ 0.21
COL7A1-209ENST00000474432 MAGED1Q9Y5V3 778 aaPredicted RBP16.34■□□□□ 0.21
COL7A1-209ENST00000474432 SLC25A15Q9Y619 301 aa16.34■□□□□ 0.21
COL7A1-209ENST00000474432 A0A096LPI6 279 aa16.33■□□□□ 0.2
COL7A1-209ENST00000474432 TRBV5-3A0A0A0MS03 114 aa16.33■□□□□ 0.2
COL7A1-209ENST00000474432 RPS4XP62701 263 aaKnown RBP16.33■□□□□ 0.2
COL7A1-209ENST00000474432 FAPQ12884 760 aa16.33■□□□□ 0.2
COL7A1-209ENST00000474432 CEACAM7Q14002 265 aa16.33■□□□□ 0.2
COL7A1-209ENST00000474432 PAGE3Q5JUK9 113 aa16.33■□□□□ 0.2
COL7A1-209ENST00000474432 TSPO2Q5TGU0 170 aa16.33■□□□□ 0.2
COL7A1-209ENST00000474432 WBP2NLQ6ICG8 309 aa16.33■□□□□ 0.2
COL7A1-209ENST00000474432 COMTD1Q86VU5 262 aa16.33■□□□□ 0.2
COL7A1-209ENST00000474432 UBE2J2Q8N2K1 259 aa16.33■□□□□ 0.2
COL7A1-209ENST00000474432 WDR31Q8NA23 367 aa16.33■□□□□ 0.2
COL7A1-209ENST00000474432 C3orf49Q96BT1 292 aa16.33■□□□□ 0.2
COL7A1-209ENST00000474432 CCDC28BQ9BUN5 200 aa16.33■□□□□ 0.2
COL7A1-209ENST00000474432 ASB6Q9NWX5 421 aa16.33■□□□□ 0.2
COL7A1-209ENST00000474432 GMEB1Q9Y692 573 aa16.33■□□□□ 0.2
COL7A1-209ENST00000474432 TMEM229AB2RXF0 380 aa16.32■□□□□ 0.2
COL7A1-209ENST00000474432 SMAD7O15105 426 aaKnown RBP16.32■□□□□ 0.2
COL7A1-209ENST00000474432 FRS3O43559 492 aa16.32■□□□□ 0.2
COL7A1-209ENST00000474432 AKR7A3O95154 331 aa16.32■□□□□ 0.2
COL7A1-209ENST00000474432 UQCRBP14927 111 aa16.32■□□□□ 0.2
COL7A1-209ENST00000474432 IDUAP35475 653 aa16.32■□□□□ 0.2
COL7A1-209ENST00000474432 ATP5J2P56134 94 aa16.32■□□□□ 0.2
COL7A1-209ENST00000474432 OR7A5Q15622 319 aa16.32■□□□□ 0.2
COL7A1-209ENST00000474432 OTUD3Q5T2D3 398 aaPredicted RBP16.32■□□□□ 0.2
COL7A1-209ENST00000474432 PRAMEF8Q5VWM4 474 aa16.32■□□□□ 0.2
COL7A1-209ENST00000474432 PRAMEF7Q5VXH5 474 aa16.32■□□□□ 0.2
COL7A1-209ENST00000474432 CADM2Q8N3J6 435 aa16.32■□□□□ 0.2
COL7A1-209ENST00000474432 TMEM45BQ96B21 275 aa16.32■□□□□ 0.2
COL7A1-209ENST00000474432 MUCL1Q96DR8 90 aa16.32■□□□□ 0.2
COL7A1-209ENST00000474432 ZNF385AQ96PM9 386 aaKnown RBP16.32■□□□□ 0.2
COL7A1-209ENST00000474432 NAA11Q9BSU3 229 aaPredicted RBP16.32■□□□□ 0.2
COL7A1-209ENST00000474432 IKZF5Q9H5V7 419 aa16.32■□□□□ 0.2
COL7A1-209ENST00000474432 THUMPD1Q9NXG2 353 aaKnown RBP16.32■□□□□ 0.2
COL7A1-209ENST00000474432 TAS2R16Q9NYV7 291 aa16.32■□□□□ 0.2
COL7A1-209ENST00000474432 SLC9A8Q9Y2E8 581 aa16.32■□□□□ 0.2
COL7A1-209ENST00000474432 A0A1W2PR80 420 aa16.31■□□□□ 0.2
COL7A1-209ENST00000474432 AQP7P3A6NL99 342 aa16.31■□□□□ 0.2
COL7A1-209ENST00000474432 ABCD4O14678 606 aa16.31■□□□□ 0.2
COL7A1-209ENST00000474432 POLR3GO15318 223 aaPredicted RBP16.31■□□□□ 0.2
COL7A1-209ENST00000474432 CXCR1P25024 350 aa16.31■□□□□ 0.2
COL7A1-209ENST00000474432 SLC25A3Q00325 362 aa16.31■□□□□ 0.2
COL7A1-209ENST00000474432 HOXC5Q00444 222 aa16.31■□□□□ 0.2
COL7A1-209ENST00000474432 FADDQ13158 208 aa16.31■□□□□ 0.2
COL7A1-209ENST00000474432 LARS2Q15031 903 aaKnown RBP16.31■□□□□ 0.2
COL7A1-209ENST00000474432 ZSWIM7Q19AV6 140 aa16.31■□□□□ 0.2
COL7A1-209ENST00000474432 CASP12Q6UXS9 341 aa16.31■□□□□ 0.2
COL7A1-209ENST00000474432 SSX8Q7RTT4 187 aa16.31■□□□□ 0.2
COL7A1-209ENST00000474432 OR9K2Q8NGE7 335 aa16.31■□□□□ 0.2
COL7A1-209ENST00000474432 OR52N5Q8NH56 324 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 433.6 ms