RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 SYNDIG1Q9H7V2 258 aa9.81□□□□□ -0.84
CUX1-205ENST00000425244 ALG5Q9Y673 324 aa9.81□□□□□ -0.84
CUX1-205ENST00000425244 ASPMQ8IZT6 3477 aa9.81□□□□□ -0.84
CUX1-205ENST00000425244 SLC9B1P1A6NJY1 282 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 LRRN3E7EW58 273 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 SEC14L5O43304 696 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 SLC19A2O60779 497 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 PAHP00439 452 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 PROS1P07225 676 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 NGFRP08138 427 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 SBK2P0C263 348 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 NAGAP17050 411 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 F8A1P23610 371 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 HOXA6P31267 233 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 MTNR1BP49286 362 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 STX4Q12846 297 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 ERV3-1Q14264 604 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 ZNHIT3Q15649 155 aaPredicted RBP9.8□□□□□ -0.84
CUX1-205ENST00000425244 GXYLT1Q4G148 440 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 RNASE12Q5GAN4 147 aaKnown RBP9.8□□□□□ -0.84
CUX1-205ENST00000425244 RPL13AP3Q6NVV1 102 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 SLC35F3Q8IY50 421 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 SDR9C7Q8NEX9 313 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 OR52E2Q8NGJ4 325 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 OR5J2Q8NH18 312 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 ERMAPQ96PL5 475 aaPredicted RBP9.8□□□□□ -0.84
CUX1-205ENST00000425244 DHRS9Q9BPW9 319 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 SOSTQ9BQB4 213 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 TMEM246Q9BRR3 403 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 JAM3Q9BX67 310 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 LRRN3Q9H3W5 708 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 GAREM1Q9H706 876 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 ADGRL4Q9HBW9 690 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 ENAMQ9NRM1 1142 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 ZMIZ1Q9ULJ6 1067 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 RNF215Q9Y6U7 377 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 A0A0B4J2E0 115 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 A0A1B0GX12 115 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 CPED1A4D0V7 1026 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 FMO6PO60774 539 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 TSPAN9O75954 239 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 AK1P00568 194 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 IGKV1D-16P01601 117 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 EIF4EP06730 217 aaKnown RBP9.8□□□□□ -0.84
CUX1-205ENST00000425244 CTRB1P17538 263 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 HK1P19367 917 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 CFL1P23528 166 aaKnown RBP9.8□□□□□ -0.84
CUX1-205ENST00000425244 NAA10P41227 235 aaPredicted RBP9.8□□□□□ -0.84
CUX1-205ENST00000425244 MAT1AQ00266 395 aaKnown RBP9.8□□□□□ -0.84
CUX1-205ENST00000425244 BDH1Q02338 343 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 FAM53BQ14153 422 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 C14orf28Q4W4Y0 310 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 TP53I3Q53FA7 332 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 TRIM61Q5EBN2 209 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 HBMQ6B0K9 141 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 CTRB2Q6GPI1 263 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 ZNF613Q6PF04 617 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 METAP1DQ6UB28 335 aaPredicted RBP9.8□□□□□ -0.84
CUX1-205ENST00000425244 RNF44Q7L0R7 432 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 SSX6Q7RTT6 188 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 METTL27Q8N6F8 245 aaPredicted RBP9.8□□□□□ -0.84
CUX1-205ENST00000425244 AVL9Q8NBF6 648 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 C7orf57Q8NEG2 295 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 OR4M1Q8NGD0 313 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 ABHD4Q8TB40 342 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 UPRTQ96BW1 309 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 C14orf105Q9NVL8 296 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 SOHLH2Q9NX45 425 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 DTX4Q9Y2E6 619 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 PCDHGB7Q9Y5F8 929 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 ENTPD2Q9Y5L3 495 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 CACNA1HO95180 2353 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 FAM172BPA6NC97 362 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 OR6C70A6NIJ9 312 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 CHP2O43745 196 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 PRKNO60260 465 aaPredicted RBP9.8□□□□□ -0.84
CUX1-205ENST00000425244 SLC6A6P31641 620 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 FASLGP48023 281 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 PGDP52209 483 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 RAB38P57729 211 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 PSG6Q00889 435 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 ZNF85Q03923 595 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 ZNF267Q14586 743 aaPredicted RBP9.8□□□□□ -0.84
CUX1-205ENST00000425244 ANGPT1Q15389 498 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 EXOSC6Q5RKV6 272 aaKnown RBP9.8□□□□□ -0.84
CUX1-205ENST00000425244 SFXN4Q6P4A7 337 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 ZCCHC12Q6PEW1 402 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 RTL4Q6ZR62 310 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 SYT9Q86SS6 491 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 NOXA1Q86UR1 476 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 LINC00469Q8N7U9 141 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 ASCC1Q8N9N2 400 aaKnown RBP9.8□□□□□ -0.84
CUX1-205ENST00000425244 RIT1Q92963 219 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 RBM18Q96H35 190 aaKnown RBP9.8□□□□□ -0.84
CUX1-205ENST00000425244 FOLH1BQ9HBA9 442 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 MCCC2Q9HCC0 563 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 C12orf4Q9NQ89 552 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 DNAJB12Q9NXW2 375 aaKnown RBP9.8□□□□□ -0.84
CUX1-205ENST00000425244 RPS6KB2Q9UBS0 482 aa9.8□□□□□ -0.84
CUX1-205ENST00000425244 NKX2-2O95096 273 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms