RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 ACTR3P61158 418 aa8.27□□□□□ -1.09
VPS53-203ENST00000401468 VLDLRP98155 873 aa8.27□□□□□ -1.09
VPS53-203ENST00000401468 CCNIQ14094 377 aa8.27□□□□□ -1.09
VPS53-203ENST00000401468 SLC10A1Q14973 349 aa8.27□□□□□ -1.09
VPS53-203ENST00000401468 WBP2NLQ6ICG8 309 aa8.27□□□□□ -1.09
VPS53-203ENST00000401468 CYP2R1Q6VVX0 501 aa8.27□□□□□ -1.09
VPS53-203ENST00000401468 RPTNQ6XPR3 784 aa8.27□□□□□ -1.09
VPS53-203ENST00000401468 TRILQ7L0X0 811 aa8.27□□□□□ -1.09
VPS53-203ENST00000401468 GRINAQ7Z429 371 aa8.27□□□□□ -1.09
VPS53-203ENST00000401468 ATG4DQ86TL0 474 aaPredicted RBP8.27□□□□□ -1.09
VPS53-203ENST00000401468 RANBP3LQ86VV4 465 aaPredicted RBP8.27□□□□□ -1.09
VPS53-203ENST00000401468 CARM1Q86X55 608 aa8.27□□□□□ -1.09
VPS53-203ENST00000401468 RBM45Q8IUH3 476 aaKnown RBP8.27□□□□□ -1.09
VPS53-203ENST00000401468 OR10Q1Q8NGQ4 319 aa8.27□□□□□ -1.09
VPS53-203ENST00000401468 CA5BP1Q8WTZ4 195 aa8.27□□□□□ -1.09
VPS53-203ENST00000401468 TMEM234Q8WY98 164 aa8.27□□□□□ -1.09
VPS53-203ENST00000401468 C3orf49Q96BT1 292 aa8.27□□□□□ -1.09
VPS53-203ENST00000401468 ZNF559Q9BR84 538 aa8.27□□□□□ -1.09
VPS53-203ENST00000401468 PIGQQ9BRB3 760 aa8.27□□□□□ -1.09
VPS53-203ENST00000401468 TRIM15Q9C019 465 aa8.27□□□□□ -1.09
VPS53-203ENST00000401468 TRIM2Q9C040 744 aa8.27□□□□□ -1.09
VPS53-203ENST00000401468 AMBRA1Q9C0C7 1298 aa8.27□□□□□ -1.09
VPS53-203ENST00000401468 LDAHQ9H6V9 325 aa8.27□□□□□ -1.09
VPS53-203ENST00000401468 NDUFAF4Q9P032 175 aa8.27□□□□□ -1.09
VPS53-203ENST00000401468 A4GNTQ9UNA3 340 aa8.27□□□□□ -1.09
VPS53-203ENST00000401468 SH3GLB1Q9Y371 365 aa8.27□□□□□ -1.09
VPS53-203ENST00000401468 DHRS12A0PJE2 317 aa8.26□□□□□ -1.09
VPS53-203ENST00000401468 OR2M5A3KFT3 312 aa8.26□□□□□ -1.09
VPS53-203ENST00000401468 OR14I1A6ND48 311 aa8.26□□□□□ -1.09
VPS53-203ENST00000401468 EFNA2O43921 213 aa8.26□□□□□ -1.09
VPS53-203ENST00000401468 NPIPB7O75200 414 aa8.26□□□□□ -1.09
VPS53-203ENST00000401468 OR5F1O95221 314 aa8.26□□□□□ -1.09
VPS53-203ENST00000401468 ZNF682O95780 498 aa8.26□□□□□ -1.09
VPS53-203ENST00000401468 ACTL6AO96019 429 aa8.26□□□□□ -1.09
VPS53-203ENST00000401468 IGF2P01344 180 aa8.26□□□□□ -1.09
VPS53-203ENST00000401468 RAP2AP10114 183 aa8.26□□□□□ -1.09
VPS53-203ENST00000401468 HK1P19367 917 aa8.26□□□□□ -1.09
VPS53-203ENST00000401468 TNFRSF1BP20333 461 aa8.26□□□□□ -1.09
VPS53-203ENST00000401468 OR1E2P47887 323 aa8.26□□□□□ -1.09
VPS53-203ENST00000401468 IDH2P48735 452 aaKnown RBP8.26□□□□□ -1.09
VPS53-203ENST00000401468 LHX2P50458 406 aa8.26□□□□□ -1.09
VPS53-203ENST00000401468 AGFG1P52594 562 aaKnown RBP8.26□□□□□ -1.09
VPS53-203ENST00000401468 SESN3P58005 492 aa8.26□□□□□ -1.09
VPS53-203ENST00000401468 CRYZQ08257 329 aaKnown RBP8.26□□□□□ -1.09
VPS53-203ENST00000401468 FOXF1Q12946 379 aa8.26□□□□□ -1.09
VPS53-203ENST00000401468 BCL2A1Q16548 175 aa8.26□□□□□ -1.09
VPS53-203ENST00000401468 GXYLT1Q4G148 440 aa8.26□□□□□ -1.09
VPS53-203ENST00000401468 ENTPD8Q5MY95 495 aa8.26□□□□□ -1.09
VPS53-203ENST00000401468 VASNQ6EMK4 673 aa8.26□□□□□ -1.09
VPS53-203ENST00000401468 RTL6Q6ICC9 239 aa8.26□□□□□ -1.09
VPS53-203ENST00000401468 ULK3Q6PHR2 472 aa8.26□□□□□ -1.09
VPS53-203ENST00000401468 XKRXQ6PP77 449 aa8.26□□□□□ -1.09
VPS53-203ENST00000401468 PLEKHM3Q6ZWE6 761 aa8.26□□□□□ -1.09
VPS53-203ENST00000401468 ADGRG3Q86Y34 549 aa8.26□□□□□ -1.09
VPS53-203ENST00000401468 LIX1LQ8IVB5 337 aa8.26□□□□□ -1.09
VPS53-203ENST00000401468 OFCC1Q8IZS5 231 aa8.26□□□□□ -1.09
VPS53-203ENST00000401468 TMCO5AQ8N6Q1 288 aa8.26□□□□□ -1.09
VPS53-203ENST00000401468 DNAJA4Q8WW22 397 aaPredicted RBP8.26□□□□□ -1.09
VPS53-203ENST00000401468 SLC38A4Q969I6 547 aa8.26□□□□□ -1.09
VPS53-203ENST00000401468 SLCO4A1Q96BD0 722 aa8.26□□□□□ -1.09
VPS53-203ENST00000401468 TPD52L3Q96J77 140 aa8.26□□□□□ -1.09
VPS53-203ENST00000401468 LURAP1Q96LR2 239 aa8.26□□□□□ -1.09
VPS53-203ENST00000401468 PRRC1Q96M27 445 aa8.26□□□□□ -1.09
VPS53-203ENST00000401468 RAB3IPQ96QF0 476 aaPredicted RBP8.26□□□□□ -1.09
VPS53-203ENST00000401468 ZNF300Q96RE9 604 aaPredicted RBP8.26□□□□□ -1.09
VPS53-203ENST00000401468 FUZQ9BT04 418 aa8.26□□□□□ -1.09
VPS53-203ENST00000401468 UGT2B28Q9BY64 529 aa8.26□□□□□ -1.09
VPS53-203ENST00000401468 MAN2C1Q9NTJ4 1040 aa8.26□□□□□ -1.09
VPS53-203ENST00000401468 CCM2LQ9NUG4 571 aaPredicted RBP8.26□□□□□ -1.09
VPS53-203ENST00000401468 DKKL1Q9UK85 242 aa8.26□□□□□ -1.09
VPS53-203ENST00000401468 SLC13A4Q9UKG4 626 aa8.26□□□□□ -1.09
VPS53-203ENST00000401468 FAM215AQ9Y5M1 114 aa8.26□□□□□ -1.09
VPS53-203ENST00000401468 KLF2Q9Y5W3 355 aaPredicted RBP8.26□□□□□ -1.09
VPS53-203ENST00000401468 AP4B1Q9Y6B7 739 aa8.26□□□□□ -1.09
VPS53-203ENST00000401468 ENPP4Q9Y6X5 453 aa8.26□□□□□ -1.09
VPS53-203ENST00000401468 PRRC2AP48634 2157 aaKnown RBP8.26□□□□□ -1.09
VPS53-203ENST00000401468 FREM1Q5H8C1 2179 aa8.25□□□□□ -1.09
VPS53-203ENST00000401468 A0A087WUJ7 227 aa8.25□□□□□ -1.09
VPS53-203ENST00000401468 TRGV5A0A0B4J1U4 118 aa8.25□□□□□ -1.09
VPS53-203ENST00000401468 A0A1B0GWA3 101 aa8.25□□□□□ -1.09
VPS53-203ENST00000401468 A0A1W2PRQ8 180 aa8.25□□□□□ -1.09
VPS53-203ENST00000401468 TRAPPC13A5PLN9 417 aa8.25□□□□□ -1.09
VPS53-203ENST00000401468 E9PLN8 166 aa8.25□□□□□ -1.09
VPS53-203ENST00000401468 ZNF208O43345 1280 aa8.25□□□□□ -1.09
VPS53-203ENST00000401468 CHP2O43745 196 aa8.25□□□□□ -1.09
VPS53-203ENST00000401468 IFNW1P05000 195 aa8.25□□□□□ -1.09
VPS53-203ENST00000401468 CPN1P15169 458 aa8.25□□□□□ -1.09
VPS53-203ENST00000401468 RHCEP18577 417 aa8.25□□□□□ -1.09
VPS53-203ENST00000401468 LIMS1P48059 325 aa8.25□□□□□ -1.09
VPS53-203ENST00000401468 CLK1P49759 484 aaKnown RBP8.25□□□□□ -1.09
VPS53-203ENST00000401468 POLR2HP52434 150 aaKnown RBP8.25□□□□□ -1.09
VPS53-203ENST00000401468 HMGA2P52926 109 aa8.25□□□□□ -1.09
VPS53-203ENST00000401468 CLDN15P56746 228 aa8.25□□□□□ -1.09
VPS53-203ENST00000401468 HOXC5Q00444 222 aa8.25□□□□□ -1.09
VPS53-203ENST00000401468 TLE4Q04727 773 aa8.25□□□□□ -1.09
VPS53-203ENST00000401468 SELENBP1Q13228 472 aa8.25□□□□□ -1.09
VPS53-203ENST00000401468 DGCR6Q14129 220 aa8.25□□□□□ -1.09
VPS53-203ENST00000401468 TOMM20Q15388 145 aa8.25□□□□□ -1.09
VPS53-203ENST00000401468 OR1Q1Q15612 314 aa8.25□□□□□ -1.09
VPS53-203ENST00000401468 CTU2Q2VPK5 515 aaKnown RBP8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms