RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 SORBS1Q9BX66 1292 aaKnown RBP6.71□□□□□ -1.34
UPF2-203ENST00000397053 SMIM3Q9BZL3 60 aa6.71□□□□□ -1.34
UPF2-203ENST00000397053 LIN28AQ9H9Z2 209 aaKnown RBP6.71□□□□□ -1.34
UPF2-203ENST00000397053 C1GALT1Q9NS00 363 aa6.71□□□□□ -1.34
UPF2-203ENST00000397053 F8W036 122 aa6.71□□□□□ -1.34
UPF2-203ENST00000397053 MSTNO14793 375 aa6.71□□□□□ -1.34
UPF2-203ENST00000397053 CHRNB1P11230 501 aa6.71□□□□□ -1.34
UPF2-203ENST00000397053 CDK4P11802 303 aa6.71□□□□□ -1.34
UPF2-203ENST00000397053 HLA-DMAP28067 261 aa6.71□□□□□ -1.34
UPF2-203ENST00000397053 WNT4P56705 351 aa6.71□□□□□ -1.34
UPF2-203ENST00000397053 BLOC1S1P78537 153 aa6.71□□□□□ -1.34
UPF2-203ENST00000397053 DBPQ10586 325 aaPredicted RBP6.71□□□□□ -1.34
UPF2-203ENST00000397053 EXT1Q16394 746 aa6.71□□□□□ -1.34
UPF2-203ENST00000397053 COQ5Q5HYK3 327 aa6.71□□□□□ -1.34
UPF2-203ENST00000397053 GARNL3Q5VVW2 1013 aa6.71□□□□□ -1.34
UPF2-203ENST00000397053 TRUB1Q8WWH5 349 aaKnown RBP6.71□□□□□ -1.34
UPF2-203ENST00000397053 SLC39A7Q92504 469 aa6.71□□□□□ -1.34
UPF2-203ENST00000397053 ZNF583Q96ND8 569 aa6.71□□□□□ -1.34
UPF2-203ENST00000397053 KCNJ15Q99712 375 aa6.71□□□□□ -1.34
UPF2-203ENST00000397053 MAGIXQ9H6Y5 334 aa6.71□□□□□ -1.34
UPF2-203ENST00000397053 UBE2ZQ9H832 354 aaPredicted RBP6.71□□□□□ -1.34
UPF2-203ENST00000397053 CRLF2Q9HC73 371 aa6.71□□□□□ -1.34
UPF2-203ENST00000397053 CDC42BPAQ5VT25 1732 aa6.71□□□□□ -1.34
UPF2-203ENST00000397053 MEIS3P1A6NDR6 274 aa6.71□□□□□ -1.34
UPF2-203ENST00000397053 TLCD2A6NGC4 264 aa6.71□□□□□ -1.34
UPF2-203ENST00000397053 C4orf47A7E2U8 309 aa6.71□□□□□ -1.34
UPF2-203ENST00000397053 HIDE1A8MVS5 230 aa6.71□□□□□ -1.34
UPF2-203ENST00000397053 ARPC5O15511 151 aa6.71□□□□□ -1.34
UPF2-203ENST00000397053 OR10J4P0C629 311 aa6.71□□□□□ -1.34
UPF2-203ENST00000397053 AHRP35869 848 aa6.71□□□□□ -1.34
UPF2-203ENST00000397053 SRP14P37108 136 aaKnown RBP6.71□□□□□ -1.34
UPF2-203ENST00000397053 PGGT1BP53609 377 aa6.71□□□□□ -1.34
UPF2-203ENST00000397053 CLDN6P56747 220 aa6.71□□□□□ -1.34
UPF2-203ENST00000397053 TRA2BP62995 288 aaKnown RBP6.71□□□□□ -1.34
UPF2-203ENST00000397053 DEFB109BQ30KR1 87 aa6.71□□□□□ -1.34
UPF2-203ENST00000397053 SHEQ5VZ18 495 aa6.71□□□□□ -1.34
UPF2-203ENST00000397053 NPSR1Q6W5P4 371 aa6.71□□□□□ -1.34
UPF2-203ENST00000397053 TMEM64Q6YI46 380 aa6.71□□□□□ -1.34
UPF2-203ENST00000397053 SERPINA12Q8IW75 414 aa6.71□□□□□ -1.34
UPF2-203ENST00000397053 CNTN4Q8IWV2 1026 aa6.71□□□□□ -1.34
UPF2-203ENST00000397053 C1orf87Q8N0U7 546 aa6.71□□□□□ -1.34
UPF2-203ENST00000397053 MINDY1Q8N5J2 469 aa6.71□□□□□ -1.34
UPF2-203ENST00000397053 OR5W2Q8NH69 310 aa6.71□□□□□ -1.34
UPF2-203ENST00000397053 ZBED3Q96IU2 234 aaPredicted RBP6.71□□□□□ -1.34
UPF2-203ENST00000397053 EDEM2Q9BV94 578 aa6.71□□□□□ -1.34
UPF2-203ENST00000397053 C1QTNF6Q9BXI9 259 aa6.71□□□□□ -1.34
UPF2-203ENST00000397053 KLF16Q9BXK1 252 aaPredicted RBP6.71□□□□□ -1.34
UPF2-203ENST00000397053 OR52D1Q9H346 318 aa6.71□□□□□ -1.34
UPF2-203ENST00000397053 PMS2P1A4D2B8 440 aa6.7□□□□□ -1.34
UPF2-203ENST00000397053 HCRTR1O43613 425 aa6.7□□□□□ -1.34
UPF2-203ENST00000397053 SUSD5O60279 629 aa6.7□□□□□ -1.34
UPF2-203ENST00000397053 ARHGEF15O94989 841 aa6.7□□□□□ -1.34
UPF2-203ENST00000397053 CLDN1O95832 211 aa6.7□□□□□ -1.34
UPF2-203ENST00000397053 AKAIN1P0CW23 69 aa6.7□□□□□ -1.34
UPF2-203ENST00000397053 ARAFP10398 606 aa6.7□□□□□ -1.34
UPF2-203ENST00000397053 LIPCP11150 499 aa6.7□□□□□ -1.34
UPF2-203ENST00000397053 PSMB5P28074 263 aa6.7□□□□□ -1.34
UPF2-203ENST00000397053 RAB38P57729 211 aa6.7□□□□□ -1.34
UPF2-203ENST00000397053 NHSL2Q5HYW2 709 aa6.7□□□□□ -1.34
UPF2-203ENST00000397053 ATPAF1Q5TC12 328 aaPredicted RBP6.7□□□□□ -1.34
UPF2-203ENST00000397053 RANBP10Q6VN20 620 aa6.7□□□□□ -1.34
UPF2-203ENST00000397053 IL34Q6ZMJ4 242 aa6.7□□□□□ -1.34
UPF2-203ENST00000397053 PGAP1Q75T13 922 aa6.7□□□□□ -1.34
UPF2-203ENST00000397053 TSPYL5Q86VY4 417 aaPredicted RBP6.7□□□□□ -1.34
UPF2-203ENST00000397053 FAM217AQ8IXS0 508 aa6.7□□□□□ -1.34
UPF2-203ENST00000397053 SIRT6Q8N6T7 355 aa6.7□□□□□ -1.34
UPF2-203ENST00000397053 ACBD4Q8NC06 268 aa6.7□□□□□ -1.34
UPF2-203ENST00000397053 CHDHQ8NE62 594 aaPredicted RBP6.7□□□□□ -1.34
UPF2-203ENST00000397053 ASB17Q8WXJ9 295 aa6.7□□□□□ -1.34
UPF2-203ENST00000397053 NUDT9Q9BW91 350 aa6.7□□□□□ -1.34
UPF2-203ENST00000397053 WASH6PQ9NQA3 447 aa6.7□□□□□ -1.34
UPF2-203ENST00000397053 DNMT3BQ9UBC3 853 aaKnown RBP6.7□□□□□ -1.34
UPF2-203ENST00000397053 ACTL7AQ9Y615 435 aa6.7□□□□□ -1.34
UPF2-203ENST00000397053 LRRIQ1Q96JM4 1722 aa6.7□□□□□ -1.34
UPF2-203ENST00000397053 TRAV27A0A087WT01 109 aa6.7□□□□□ -1.34
UPF2-203ENST00000397053 WASH4PA8MWX3 477 aa6.7□□□□□ -1.34
UPF2-203ENST00000397053 TRAF3IP2O43734 574 aaPredicted RBP6.7□□□□□ -1.34
UPF2-203ENST00000397053 SNCGO76070 127 aa6.7□□□□□ -1.34
UPF2-203ENST00000397053 NFYAP23511 347 aaPredicted RBP6.7□□□□□ -1.34
UPF2-203ENST00000397053 NKX6-1P78426 367 aaPredicted RBP6.7□□□□□ -1.34
UPF2-203ENST00000397053 GTDC1Q4AE62 458 aa6.7□□□□□ -1.34
UPF2-203ENST00000397053 RNLSQ5VYX0 342 aa6.7□□□□□ -1.34
UPF2-203ENST00000397053 CD163Q86VB7 1156 aa6.7□□□□□ -1.34
UPF2-203ENST00000397053 NPWQ8N729 165 aa6.7□□□□□ -1.34
UPF2-203ENST00000397053 OR9Q2Q8NGE9 314 aa6.7□□□□□ -1.34
UPF2-203ENST00000397053 ADAMTS16Q8TE57 1224 aa6.7□□□□□ -1.34
UPF2-203ENST00000397053 ZNF480Q8WV37 535 aa6.7□□□□□ -1.34
UPF2-203ENST00000397053 MIB2Q96AX9 1013 aa6.7□□□□□ -1.34
UPF2-203ENST00000397053 INSM2Q96T92 566 aaPredicted RBP6.7□□□□□ -1.34
UPF2-203ENST00000397053 C1QTNF2Q9BXJ5 285 aa6.7□□□□□ -1.34
UPF2-203ENST00000397053 SEMA4CQ9C0C4 833 aa6.7□□□□□ -1.34
UPF2-203ENST00000397053 EVA1AQ9H8M9 152 aa6.7□□□□□ -1.34
UPF2-203ENST00000397053 BIN3Q9NQY0 253 aa6.7□□□□□ -1.34
UPF2-203ENST00000397053 ASF1BQ9NVP2 202 aa6.7□□□□□ -1.34
UPF2-203ENST00000397053 KLF13Q9Y2Y9 288 aaPredicted RBP6.7□□□□□ -1.34
UPF2-203ENST00000397053 PLEKHM1Q9Y4G2 1056 aa6.7□□□□□ -1.34
UPF2-203ENST00000397053 AKAP6Q13023 2319 aa6.7□□□□□ -1.34
UPF2-203ENST00000397053 C10orf71Q711Q0 1435 aa6.7□□□□□ -1.34
UPF2-203ENST00000397053 CAMTA1Q9Y6Y1 1673 aa6.7□□□□□ -1.34
UPF2-203ENST00000397053 A0A0U1RQS6 177 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms