RNA–Protein interactions for RNA: ENST00000354071.7

BRCA1-202, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-202ENST00000354071 RNF24Q9Y225 148 aa1.34□□□□□ -2.2
BRCA1-202ENST00000354071 KIF27Q86VH2 1401 aa1.34□□□□□ -2.2
BRCA1-202ENST00000354071 PRG4Q92954 1404 aaPredicted RBP1.34□□□□□ -2.2
BRCA1-202ENST00000354071 NCOA3Q9Y6Q9 1424 aa1.34□□□□□ -2.2
BRCA1-202ENST00000354071 NALCNQ8IZF0 1738 aa1.34□□□□□ -2.2
BRCA1-202ENST00000354071 A2MP01023 1474 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 PTPN13Q12923 2485 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP1.33□□□□□ -2.2
BRCA1-202ENST00000354071 HSD17B6O14756 317 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 NVLO15381 856 aaKnown RBP1.33□□□□□ -2.2
BRCA1-202ENST00000354071 POLR2DO15514 142 aaKnown RBP1.33□□□□□ -2.2
BRCA1-202ENST00000354071 AIREO43918 545 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 PRKYO43930 277 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 CLPXO76031 633 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 HCKP08631 526 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 HOXB7P09629 217 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 GSTM3P21266 225 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 KITLGP21583 273 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 PRKACGP22612 351 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 CALML3P27482 149 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 NF2P35240 595 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 STARP49675 285 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 PRKXP51817 358 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 DLX5P56178 289 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 RAB40BQ12829 278 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 ZNF177Q13360 481 aaPredicted RBP1.33□□□□□ -2.2
BRCA1-202ENST00000354071 ZIC1Q15915 447 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 BEX5Q5H9J7 111 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 C6orf183Q5T699 404 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 WLSQ5T9L3 541 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 OR52W1Q6IF63 320 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 GDPD4Q6W3E5 623 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 APTXQ7Z2E3 356 aaKnown RBP1.33□□□□□ -2.2
BRCA1-202ENST00000354071 LUZP2Q86TE4 346 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 CLDN19Q8N6F1 224 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 SPATA4Q8NEY3 305 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 SLC22A8Q8TCC7 542 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 TOP1MTQ969P6 601 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 EFHD2Q96C19 240 aaPredicted RBP1.33□□□□□ -2.2
BRCA1-202ENST00000354071 CMTM7Q96FZ5 175 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 NODALQ96S42 347 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 SLC29A1Q99808 456 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 FAM173AQ9BQD7 235 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 CENPKQ9BS16 269 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 HOXD1Q9GZZ0 328 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 OR51M1Q9H341 326 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 ANKRD19PQ9H560 264 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 SUDS3Q9H7L9 328 aaPredicted RBP1.33□□□□□ -2.2
BRCA1-202ENST00000354071 LYRM4Q9HD34 91 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 SCRT2Q9NQ03 307 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 SLC2A8Q9NY64 477 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 SEC14L4Q9UDX3 406 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 BARX2Q9UMQ3 279 aaPredicted RBP1.33□□□□□ -2.2
BRCA1-202ENST00000354071 RNF6Q9Y252 685 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 KCNIP3Q9Y2W7 256 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 V9GYY5 206 aaPredicted RBP1.33□□□□□ -2.2
BRCA1-202ENST00000354071 LTN1O94822 1766 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 MYH15Q9Y2K3 1946 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 PLXNC1O60486 1568 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 IGKV1D-8A0A087WSZ0 117 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 FAM240BA0A1B0GVZ2 78 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 IFITM10A6NMD0 228 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 A8MXQ7 604 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 PPP1R2P9O14990 202 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 SCRG1O75711 98 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 AMBPP02760 352 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 MMP1P03956 469 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 TPM1P09493 284 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 DBTP11182 482 aaKnown RBP1.33□□□□□ -2.2
BRCA1-202ENST00000354071 NEFHP12036 1026 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 SDC1P18827 310 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 SRMP19623 302 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 NPR2P20594 1047 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 OXTRP30559 389 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 LCN1P31025 176 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 FCGR2CP31995 323 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 RBMXP38159 391 aaKnown RBP1.33□□□□□ -2.2
BRCA1-202ENST00000354071 ETV1P50549 477 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 CRISP1P54107 249 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 MFAP2P55001 183 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 CDH4P55283 916 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 TRAF2Q12933 501 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 TMED1Q13445 227 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 SLC10A1Q14973 349 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 GABRA6Q16445 453 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 CARD16Q5EG05 197 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 GDPGP1Q6ZNW5 385 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 CHMP1BQ7LBR1 199 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 NR2C2APQ86WQ0 139 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 KLHDC8BQ8IXV7 354 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 MS4A15Q8N5U1 240 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 RHEBL1Q8TAI7 183 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 FGF11Q92914 225 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 TOMM40LQ969M1 308 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 LRRC39Q96DD0 335 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 PLEKHA8Q96JA3 519 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 RANBP9Q96S59 729 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 CHP1Q99653 195 aa1.33□□□□□ -2.2
BRCA1-202ENST00000354071 MTG1Q9BT17 334 aaPredicted RBP1.33□□□□□ -2.2
BRCA1-202ENST00000354071 BBS2Q9BXC9 721 aa1.33□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms