RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 CAMKMTQ7Z624 323 aa11.03□□□□□ -0.64
USP1-201ENST00000339950 CRIPAKQ8N1N5 446 aa11.03□□□□□ -0.64
USP1-201ENST00000339950 SLC22A18Q96BI1 424 aa11.03□□□□□ -0.64
USP1-201ENST00000339950 DPYSL5Q9BPU6 564 aa11.03□□□□□ -0.64
USP1-201ENST00000339950 ARL6Q9H0F7 186 aa11.03□□□□□ -0.64
USP1-201ENST00000339950 SEC61A2Q9H9S3 476 aa11.03□□□□□ -0.64
USP1-201ENST00000339950 THAP10Q9P2Z0 257 aaPredicted RBP11.03□□□□□ -0.64
USP1-201ENST00000339950 CPNE7Q9UBL6 633 aa11.03□□□□□ -0.64
USP1-201ENST00000339950 CACNG2Q9Y698 323 aa11.03□□□□□ -0.64
USP1-201ENST00000339950 IGHV3-20A0A0C4DH32 117 aa11.03□□□□□ -0.64
USP1-201ENST00000339950 SLC22A31A6NKX4 558 aa11.03□□□□□ -0.64
USP1-201ENST00000339950 SURF4O15260 269 aa11.03□□□□□ -0.64
USP1-201ENST00000339950 ARPC5O15511 151 aa11.03□□□□□ -0.64
USP1-201ENST00000339950 SNRNP200O75643 2136 aaKnown RBP11.03□□□□□ -0.64
USP1-201ENST00000339950 THEGLP0DJG4 465 aa11.03□□□□□ -0.64
USP1-201ENST00000339950 PKLRP30613 574 aa11.03□□□□□ -0.64
USP1-201ENST00000339950 LCN1P31025 176 aa11.03□□□□□ -0.64
USP1-201ENST00000339950 HMGA2P52926 109 aa11.03□□□□□ -0.64
USP1-201ENST00000339950 FBXO42Q6P3S6 717 aa11.03□□□□□ -0.64
USP1-201ENST00000339950 ZNF782Q6ZMW2 699 aaPredicted RBP11.03□□□□□ -0.64
USP1-201ENST00000339950 LRRC69Q6ZNQ3 347 aa11.03□□□□□ -0.64
USP1-201ENST00000339950 SSX6Q7RTT6 188 aa11.03□□□□□ -0.64
USP1-201ENST00000339950 SLC38A6Q8IZM9 456 aa11.03□□□□□ -0.64
USP1-201ENST00000339950 SLC37A2Q8TED4 501 aa11.03□□□□□ -0.64
USP1-201ENST00000339950 HHIPQ96QV1 700 aa11.03□□□□□ -0.64
USP1-201ENST00000339950 ABHD1Q96SE0 405 aa11.03□□□□□ -0.64
USP1-201ENST00000339950 AICDAQ9GZX7 198 aa11.03□□□□□ -0.64
USP1-201ENST00000339950 KLK11Q9UBX7 282 aa11.03□□□□□ -0.64
USP1-201ENST00000339950 LAMP5Q9UJQ1 280 aa11.03□□□□□ -0.64
USP1-201ENST00000339950 PATJQ8NI35 1801 aa11.03□□□□□ -0.64
USP1-201ENST00000339950 NPIPB8E9PQR5 432 aa11.02□□□□□ -0.64
USP1-201ENST00000339950 HCRTR1O43613 425 aa11.02□□□□□ -0.64
USP1-201ENST00000339950 CPEP16870 476 aa11.02□□□□□ -0.64
USP1-201ENST00000339950 PTH2RP49190 550 aa11.02□□□□□ -0.64
USP1-201ENST00000339950 P2RX3P56373 397 aa11.02□□□□□ -0.64
USP1-201ENST00000339950 FAM209AQ5JX71 171 aa11.02□□□□□ -0.64
USP1-201ENST00000339950 C16orf47Q6ZP98 133 aaPredicted RBP11.02□□□□□ -0.64
USP1-201ENST00000339950 GJD3Q8N144 294 aa11.02□□□□□ -0.64
USP1-201ENST00000339950 ZNF619Q8N2I2 560 aa11.02□□□□□ -0.64
USP1-201ENST00000339950 GIMAP1Q8WWP7 306 aa11.02□□□□□ -0.64
USP1-201ENST00000339950 HYLS1Q96M11 299 aa11.02□□□□□ -0.64
USP1-201ENST00000339950 MAP3K3Q99759 626 aa11.02□□□□□ -0.64
USP1-201ENST00000339950 ARHGAP9Q9BRR9 750 aa11.02□□□□□ -0.64
USP1-201ENST00000339950 SLC25A19Q9HC21 320 aa11.02□□□□□ -0.64
USP1-201ENST00000339950 UBQLN2Q9UHD9 624 aa11.02□□□□□ -0.64
USP1-201ENST00000339950 CBLCQ9ULV8 474 aa11.02□□□□□ -0.64
USP1-201ENST00000339950 DAPP1Q9UN19 280 aa11.02□□□□□ -0.64
USP1-201ENST00000339950 CASC3O15234 703 aaKnown RBP11.02□□□□□ -0.65
USP1-201ENST00000339950 ADH1BP00325 375 aa11.02□□□□□ -0.65
USP1-201ENST00000339950 PDGFAP04085 211 aa11.02□□□□□ -0.65
USP1-201ENST00000339950 NPR2P20594 1047 aa11.02□□□□□ -0.65
USP1-201ENST00000339950 ITGA3P26006 1051 aa11.02□□□□□ -0.65
USP1-201ENST00000339950 AKT2P31751 481 aa11.02□□□□□ -0.65
USP1-201ENST00000339950 DDOSTP39656 456 aa11.02□□□□□ -0.65
USP1-201ENST00000339950 RPS5P46782 204 aaKnown RBP11.02□□□□□ -0.65
USP1-201ENST00000339950 RPS15AP62244 130 aaKnown RBP11.02□□□□□ -0.65
USP1-201ENST00000339950 GALEQ14376 348 aa11.02□□□□□ -0.65
USP1-201ENST00000339950 OCLNQ16625 522 aa11.02□□□□□ -0.65
USP1-201ENST00000339950 WDR88Q6ZMY6 472 aa11.02□□□□□ -0.65
USP1-201ENST00000339950 RNF165Q6ZSG1 346 aa11.02□□□□□ -0.65
USP1-201ENST00000339950 MORN4Q8NDC4 146 aa11.02□□□□□ -0.65
USP1-201ENST00000339950 OR4C3Q8NH37 302 aa11.02□□□□□ -0.65
USP1-201ENST00000339950 SGTBQ96EQ0 304 aa11.02□□□□□ -0.65
USP1-201ENST00000339950 OR51J1Q9H342 316 aa11.02□□□□□ -0.65
USP1-201ENST00000339950 C14orf105Q9NVL8 296 aa11.02□□□□□ -0.65
USP1-201ENST00000339950 COMMD9Q9P000 198 aa11.02□□□□□ -0.65
USP1-201ENST00000339950 VDAC3Q9Y277 283 aa11.02□□□□□ -0.65
USP1-201ENST00000339950 TRAV18A0A075B6X5 111 aa11.02□□□□□ -0.65
USP1-201ENST00000339950 H3BML4 177 aa11.02□□□□□ -0.65
USP1-201ENST00000339950 EPPINO95925 133 aa11.02□□□□□ -0.65
USP1-201ENST00000339950 DBIP07108 87 aaKnown RBP11.02□□□□□ -0.65
USP1-201ENST00000339950 NUP62P37198 522 aaPredicted RBP11.02□□□□□ -0.65
USP1-201ENST00000339950 ARRB1P49407 418 aaPredicted RBP11.02□□□□□ -0.65
USP1-201ENST00000339950 TNFRSF17Q02223 184 aa11.02□□□□□ -0.65
USP1-201ENST00000339950 ARHGAP40Q5TG30 622 aa11.02□□□□□ -0.65
USP1-201ENST00000339950 OR10K2Q6IF99 312 aa11.02□□□□□ -0.65
USP1-201ENST00000339950 ADAMTSL4Q6UY14 1074 aa11.02□□□□□ -0.65
USP1-201ENST00000339950 GID4Q8IVV7 300 aa11.02□□□□□ -0.65
USP1-201ENST00000339950 LRRC56Q8IYG6 542 aaPredicted RBP11.02□□□□□ -0.65
USP1-201ENST00000339950 SPERTQ8NA61 448 aa11.02□□□□□ -0.65
USP1-201ENST00000339950 GAL3ST3Q96A11 431 aa11.02□□□□□ -0.65
USP1-201ENST00000339950 ZNF775Q96BV0 537 aaPredicted RBP11.02□□□□□ -0.65
USP1-201ENST00000339950 ATF6BQ99941 703 aa11.02□□□□□ -0.65
USP1-201ENST00000339950 A0A087WV48 116 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 GPR75O95800 540 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 ECDO95905 644 aaPredicted RBP11.01□□□□□ -0.65
USP1-201ENST00000339950 COL9A1P20849 921 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 EVX1P49640 407 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 GMFBP60983 142 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 GRM7Q14831 915 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 APOOLQ6UXV4 268 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 HSD17B8Q92506 261 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 ELMOD3Q96FG2 381 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 SIGLEC11Q96RL6 698 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 NUDT22Q9BRQ3 303 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 TBL1XR1Q9BZK7 514 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 FAM60AQ9NP50 221 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 PLXND1Q9Y4D7 1925 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 A0A0A6YYJ9 748 aa11.01□□□□□ -0.65
USP1-201ENST00000339950 SBK2P0C263 348 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms