RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 IER3IP1Q9Y5U9 82 aa12.17□□□□□ -0.46
HMGB1-202ENST00000339872 TMED7-TICAM2A0A0A6YYA0 188 aa12.16□□□□□ -0.46
HMGB1-202ENST00000339872 ZC3H12DA2A288 527 aaKnown RBP12.16□□□□□ -0.46
HMGB1-202ENST00000339872 ANKUB1A6NFN9 424 aa12.16□□□□□ -0.46
HMGB1-202ENST00000339872 B4DXG7 233 aa12.16□□□□□ -0.46
HMGB1-202ENST00000339872 MASP2O00187 686 aa12.16□□□□□ -0.46
HMGB1-202ENST00000339872 SUSD5O60279 629 aa12.16□□□□□ -0.46
HMGB1-202ENST00000339872 IFNGP01579 166 aa12.16□□□□□ -0.46
HMGB1-202ENST00000339872 ZNF182P17025 639 aaPredicted RBP12.16□□□□□ -0.46
HMGB1-202ENST00000339872 ATP6V1E1P36543 226 aa12.16□□□□□ -0.46
HMGB1-202ENST00000339872 PRPS1P60891 318 aa12.16□□□□□ -0.46
HMGB1-202ENST00000339872 LTBQ06643 244 aa12.16□□□□□ -0.46
HMGB1-202ENST00000339872 ITGADQ13349 1161 aa12.16□□□□□ -0.46
HMGB1-202ENST00000339872 KLHL12Q53G59 568 aa12.16□□□□□ -0.46
HMGB1-202ENST00000339872 ZNF362Q5T0B9 420 aaPredicted RBP12.16□□□□□ -0.46
HMGB1-202ENST00000339872 RNLSQ5VYX0 342 aa12.16□□□□□ -0.46
HMGB1-202ENST00000339872 B3GLCTQ6Y288 498 aa12.16□□□□□ -0.46
HMGB1-202ENST00000339872 PPP1R32Q7Z5V6 425 aa12.16□□□□□ -0.46
HMGB1-202ENST00000339872 SLC15A4Q8N697 577 aa12.16□□□□□ -0.46
HMGB1-202ENST00000339872 NANOGP1Q8N7R0 232 aa12.16□□□□□ -0.46
HMGB1-202ENST00000339872 SLC37A3Q8NCC5 494 aa12.16□□□□□ -0.46
HMGB1-202ENST00000339872 OR4F15Q8NGB8 312 aa12.16□□□□□ -0.46
HMGB1-202ENST00000339872 MOSPD2Q8NHP6 518 aa12.16□□□□□ -0.46
HMGB1-202ENST00000339872 RPL3LQ92901 407 aaKnown RBP12.16□□□□□ -0.46
HMGB1-202ENST00000339872 TAAR8Q969N4 342 aa12.16□□□□□ -0.46
HMGB1-202ENST00000339872 BCL7BQ9BQE9 202 aa12.16□□□□□ -0.46
HMGB1-202ENST00000339872 SPRY4Q9C004 299 aa12.16□□□□□ -0.46
HMGB1-202ENST00000339872 CHCHD3Q9NX63 227 aaKnown RBP12.16□□□□□ -0.46
HMGB1-202ENST00000339872 TMED7Q9Y3B3 224 aa12.16□□□□□ -0.46
HMGB1-202ENST00000339872 DKK1O94907 266 aa12.16□□□□□ -0.46
HMGB1-202ENST00000339872 RAB40ALP0C0E4 278 aa12.16□□□□□ -0.46
HMGB1-202ENST00000339872 HIST1H1CP16403 213 aaKnown RBP12.16□□□□□ -0.46
HMGB1-202ENST00000339872 PAICSP22234 425 aaKnown RBP12.16□□□□□ -0.46
HMGB1-202ENST00000339872 AQP2P41181 271 aa12.16□□□□□ -0.46
HMGB1-202ENST00000339872 RGS6P49758 472 aa12.16□□□□□ -0.46
HMGB1-202ENST00000339872 SLC16A1P53985 500 aa12.16□□□□□ -0.46
HMGB1-202ENST00000339872 VBP1P61758 197 aa12.16□□□□□ -0.46
HMGB1-202ENST00000339872 RPS7P62081 194 aaKnown RBP12.16□□□□□ -0.46
HMGB1-202ENST00000339872 C1DQ13901 141 aaKnown RBP12.16□□□□□ -0.46
HMGB1-202ENST00000339872 SPHARQ15513 63 aa12.16□□□□□ -0.46
HMGB1-202ENST00000339872 TSTQ16762 297 aaKnown RBP12.16□□□□□ -0.46
HMGB1-202ENST00000339872 DPY19L2P2Q6ZN68 376 aa12.16□□□□□ -0.46
HMGB1-202ENST00000339872 MEPCEQ7L2J0 689 aaKnown RBP12.16□□□□□ -0.46
HMGB1-202ENST00000339872 FAM98AQ8NCA5 519 aaKnown RBP12.16□□□□□ -0.46
HMGB1-202ENST00000339872 SDR9C7Q8NEX9 313 aa12.16□□□□□ -0.46
HMGB1-202ENST00000339872 PROKR2Q8NFJ6 384 aa12.16□□□□□ -0.46
HMGB1-202ENST00000339872 OR52E2Q8NGJ4 325 aa12.16□□□□□ -0.46
HMGB1-202ENST00000339872 OR4K13Q8NH42 304 aa12.16□□□□□ -0.46
HMGB1-202ENST00000339872 LIPHQ8WWY8 451 aa12.16□□□□□ -0.46
HMGB1-202ENST00000339872 TMEM234Q8WY98 164 aa12.16□□□□□ -0.46
HMGB1-202ENST00000339872 KATNB1Q9BVA0 655 aa12.16□□□□□ -0.46
HMGB1-202ENST00000339872 OR51V1Q9H2C8 321 aa12.16□□□□□ -0.46
HMGB1-202ENST00000339872 KLHL1Q9NR64 748 aa12.16□□□□□ -0.46
HMGB1-202ENST00000339872 VDAC3Q9Y277 283 aa12.16□□□□□ -0.46
HMGB1-202ENST00000339872 FARSAQ9Y285 508 aaKnown RBP12.16□□□□□ -0.46
HMGB1-202ENST00000339872 HIF3AQ9Y2N7 669 aa12.16□□□□□ -0.46
HMGB1-202ENST00000339872 WIF1Q9Y5W5 379 aa12.16□□□□□ -0.46
HMGB1-202ENST00000339872 A0A1W2PQ72 361 aa12.15□□□□□ -0.46
HMGB1-202ENST00000339872 TMEM72A0PK05 275 aa12.15□□□□□ -0.46
HMGB1-202ENST00000339872 ASAH2BP0C7U1 165 aa12.15□□□□□ -0.46
HMGB1-202ENST00000339872 CLUP10909 449 aa12.15□□□□□ -0.46
HMGB1-202ENST00000339872 GADD45AP24522 165 aa12.15□□□□□ -0.46
HMGB1-202ENST00000339872 PTGDSP41222 190 aa12.15□□□□□ -0.46
HMGB1-202ENST00000339872 SUMO3P55854 103 aaPredicted RBP12.15□□□□□ -0.46
HMGB1-202ENST00000339872 RPS15P62841 145 aaKnown RBP12.15□□□□□ -0.46
HMGB1-202ENST00000339872 ERVK-25P63136 954 aa12.15□□□□□ -0.46
HMGB1-202ENST00000339872 IL20RBQ6UXL0 311 aa12.15□□□□□ -0.46
HMGB1-202ENST00000339872 NANOGNBQ7Z5D8 188 aa12.15□□□□□ -0.46
HMGB1-202ENST00000339872 PIP4P1Q86T03 277 aa12.15□□□□□ -0.46
HMGB1-202ENST00000339872 ADGRG3Q86Y34 549 aa12.15□□□□□ -0.46
HMGB1-202ENST00000339872 PRSS33Q8NF86 280 aa12.15□□□□□ -0.46
HMGB1-202ENST00000339872 OR51G2Q8NGK0 314 aa12.15□□□□□ -0.46
HMGB1-202ENST00000339872 PTP4A1Q93096 173 aa12.15□□□□□ -0.46
HMGB1-202ENST00000339872 FAM86C1Q9NVL1 165 aa12.15□□□□□ -0.46
HMGB1-202ENST00000339872 HRH3Q9Y5N1 445 aa12.15□□□□□ -0.46
HMGB1-202ENST00000339872 TRAV36DV7A0A075B6V5 113 aa12.15□□□□□ -0.46
HMGB1-202ENST00000339872 SLC22A1O15245 554 aa12.15□□□□□ -0.46
HMGB1-202ENST00000339872 AIREO43918 545 aa12.15□□□□□ -0.46
HMGB1-202ENST00000339872 LRP3O75074 770 aa12.15□□□□□ -0.46
HMGB1-202ENST00000339872 SERPINI2O75830 405 aa12.15□□□□□ -0.46
HMGB1-202ENST00000339872 BCL10O95999 233 aa12.15□□□□□ -0.46
HMGB1-202ENST00000339872 GYPBP06028 91 aa12.15□□□□□ -0.46
HMGB1-202ENST00000339872 PRKCAP17252 672 aa12.15□□□□□ -0.46
HMGB1-202ENST00000339872 CASP3P42574 277 aa12.15□□□□□ -0.46
HMGB1-202ENST00000339872 NCS1P62166 190 aa12.15□□□□□ -0.46
HMGB1-202ENST00000339872 ZNF791Q3KP31 576 aaPredicted RBP12.15□□□□□ -0.46
HMGB1-202ENST00000339872 ALG10Q5BKT4 473 aa12.15□□□□□ -0.46
HMGB1-202ENST00000339872 STPG1Q5TH74 334 aa12.15□□□□□ -0.46
HMGB1-202ENST00000339872 C1QL3Q5VWW1 255 aa12.15□□□□□ -0.46
HMGB1-202ENST00000339872 ARSKQ6UWY0 536 aa12.15□□□□□ -0.46
HMGB1-202ENST00000339872 ESX1Q8N693 406 aa12.15□□□□□ -0.46
HMGB1-202ENST00000339872 SIRT6Q8N6T7 355 aa12.15□□□□□ -0.46
HMGB1-202ENST00000339872 DEFB124Q8NES8 71 aa12.15□□□□□ -0.46
HMGB1-202ENST00000339872 ASB15Q8WXK1 588 aa12.15□□□□□ -0.46
HMGB1-202ENST00000339872 ST8SIA1Q92185 356 aa12.15□□□□□ -0.46
HMGB1-202ENST00000339872 RELTQ969Z4 430 aa12.15□□□□□ -0.46
HMGB1-202ENST00000339872 OPALINQ96PE5 141 aa12.15□□□□□ -0.46
HMGB1-202ENST00000339872 CDCP1Q9H5V8 836 aa12.15□□□□□ -0.46
HMGB1-202ENST00000339872 FKRPQ9H9S5 495 aa12.15□□□□□ -0.46
HMGB1-202ENST00000339872 NRIP3Q9NQ35 241 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms