RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 MCATQ8IVS2 390 aaKnown RBP12.98□□□□□ -0.33
CSPG4-201ENST00000308508 NLGN4XQ8N0W4 816 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 OR4F15Q8NGB8 312 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 GLSO94925 669 aaPredicted RBP12.98□□□□□ -0.33
CSPG4-201ENST00000308508 PMS2P2O95744 297 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 CPN1P15169 458 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 SPI1P17947 270 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 HOXD13P35453 343 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 CAMK2BQ13554 666 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 SPHK2Q9NRA0 654 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 K7EQM0 130 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 ALPLP05186 524 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 THBS1P07996 1170 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 MTMR14Q8NCE2 650 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 METTL9Q9H1A3 318 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 TUBB1Q9H4B7 451 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 MYOM1P52179 1685 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 CBY3A6NI87 242 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 ARNTLO00327 626 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 RNGTTO60942 597 aaKnown RBP12.98□□□□□ -0.33
CSPG4-201ENST00000308508 KCNK5O95279 499 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 ADRB1P08588 477 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 T-ENOLP0DO92 83 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 VIPR2P41587 438 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 OR7A5Q15622 319 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 PODNL1Q6PEZ8 512 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 MRPL10Q7Z7H8 261 aaKnown RBP12.98□□□□□ -0.33
CSPG4-201ENST00000308508 GPR150Q8NGU9 434 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 SORT1Q99523 831 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 SLC6A20Q9NP91 592 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 PCDHGA1Q9Y5H4 931 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 KPTNQ9Y664 436 aa12.98□□□□□ -0.33
CSPG4-201ENST00000308508 FER1L4A9Z1Z3 1794 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 LOXHD1Q8IVV2 1947 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 PEAK1Q9H792 1746 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 A0A1W2PP55 124 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 TMEM201Q5SNT2 666 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 WBP2NLQ6ICG8 309 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 FIGLAQ6QHK4 219 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 PDZD3Q86UT5 571 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 EID2Q8N6I1 236 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 OR4N2Q8NGD1 307 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 SULT2B1O00204 365 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 ZNF888P0CJ79 500 aaPredicted RBP12.97□□□□□ -0.33
CSPG4-201ENST00000308508 C18orf21Q32NC0 220 aaPredicted RBP12.97□□□□□ -0.33
CSPG4-201ENST00000308508 RTP4Q96DX8 246 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 TXLNGYQ9BZA5 131 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 GALNT9Q9HCQ5 603 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 RYDENQ9NUL5 291 aaKnown RBP12.97□□□□□ -0.33
CSPG4-201ENST00000308508 OSGIN2Q9Y236 505 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 ZNF443Q9Y2A4 671 aaPredicted RBP12.97□□□□□ -0.33
CSPG4-201ENST00000308508 IGLON5A6NGN9 336 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 IGHG1P01857 330 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 IL1RNP18510 177 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 HCCSP53701 268 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 ENTPD8Q5MY95 495 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 MDGA2Q7Z553 956 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 OR4A16Q8NH70 328 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 CLDND1Q9NY35 253 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 C5AR2Q9P296 337 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 CNTRLQ7Z7A1 2325 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 SLC5A2P31639 672 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 RPE65Q16518 533 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 CD276Q5ZPR3 534 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 H3F3CQ6NXT2 135 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 MAP3K3Q99759 626 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 XYLT2Q9H1B5 865 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 TAF9BQ9HBM6 251 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 TMEM235A6NFC5 223 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 TMEM200CA6NKL6 621 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 TIMP2P16035 220 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 DPP4P27487 766 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 PDZK1IP1Q13113 114 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 SNTB1Q13884 538 aaKnown RBP12.97□□□□□ -0.33
CSPG4-201ENST00000308508 C3orf38Q5JPI3 329 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 HENMT1Q5T8I9 393 aaKnown RBP12.97□□□□□ -0.33
CSPG4-201ENST00000308508 IL22RA1Q8N6P7 574 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 LRFN5Q96NI6 719 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 SLC25A21Q9BQT8 299 aaPredicted RBP12.97□□□□□ -0.33
CSPG4-201ENST00000308508 TMEM59Q9BXS4 323 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 ENKD1Q9H0I2 346 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 TRAV27A0A087WT01 109 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 HPNP05981 417 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 GYPBP06028 91 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 TMEM71Q6P5X7 295 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 ELOVL3Q9HB03 270 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 MYOTQ9UBF9 498 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 RARRES3Q9UL19 164 aa12.97□□□□□ -0.33
CSPG4-201ENST00000308508 CLDN1O95832 211 aa12.96□□□□□ -0.33
CSPG4-201ENST00000308508 PTHP01270 115 aa12.96□□□□□ -0.33
CSPG4-201ENST00000308508 SOD2P04179 222 aa12.96□□□□□ -0.33
CSPG4-201ENST00000308508 TCRBP04435 133 aa12.96□□□□□ -0.33
CSPG4-201ENST00000308508 DDOSTP39656 456 aa12.96□□□□□ -0.33
CSPG4-201ENST00000308508 TGFBR3Q03167 851 aa12.96□□□□□ -0.33
CSPG4-201ENST00000308508 FAM180BQ6P0A1 224 aa12.96□□□□□ -0.33
CSPG4-201ENST00000308508 ZNF574Q6ZN55 896 aaPredicted RBP12.96□□□□□ -0.33
CSPG4-201ENST00000308508 FAM185AQ8N0U4 392 aa12.96□□□□□ -0.33
CSPG4-201ENST00000308508 OR8U1Q8NH10 309 aa12.96□□□□□ -0.33
CSPG4-201ENST00000308508 SGPP1Q9BX95 441 aa12.96□□□□□ -0.33
CSPG4-201ENST00000308508 TMPRSS5Q9H3S3 457 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms