RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 F2P00734 622 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 MT-ATP6P00846 226 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 HLA-DQB1P01920 261 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 FABP1P07148 127 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 RRASP10301 218 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 SNCAP37840 140 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 MS4A2Q01362 244 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 TMEM198Q66K66 360 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 TMEM65Q6PI78 240 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 BPHLQ86WA6 291 aaPredicted RBP4.91□□□□□ -1.62
SCN1A-201ENST00000303395 CARFQ8N187 725 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 FNDC9Q8TBE3 224 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 PINX1Q96BK5 328 aaKnown RBP4.91□□□□□ -1.62
SCN1A-201ENST00000303395 DDIT4LQ96D03 193 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 MAP3K3Q99759 626 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 CHST6Q9GZX3 395 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 RNF208Q9H0X6 261 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 RXFP3Q9NSD7 469 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 C7orf66A4D0T2 115 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 SLC31A2O15432 143 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 ZNF354AO60765 605 aaPredicted RBP4.91□□□□□ -1.62
SCN1A-201ENST00000303395 MMP3P08254 477 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 EDNRAP25101 427 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 ADRA1AP35348 466 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 OR4D2P58180 307 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 C1QTNF8P60827 252 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 HSF1Q00613 529 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 HMGCS1Q01581 520 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 PDE7AQ13946 482 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 LRRC32Q14392 662 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 TMEM41BQ5BJD5 291 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 EOGTQ5NDL2 527 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 ARHGAP40Q5TG30 622 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 PRSS42Q7Z5A4 293 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 NAA40Q86UY6 237 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 RIMKLAQ8IXN7 391 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 OR5AP2Q8NGF4 316 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 OR13D1Q8NGV5 346 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 KCNG3Q8TAE7 436 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 APH1BQ8WW43 257 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 MRGPRX2Q96LB1 330 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 TSSK2Q96PF2 358 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 SUV39H2Q9H5I1 410 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 UBE2Q2LH0YL09 131 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 MGST1P10620 155 aaKnown RBP4.91□□□□□ -1.62
SCN1A-201ENST00000303395 SCGB1A1P11684 91 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 FXYD6P3P58550 94 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 GABREP78334 506 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 REEP5Q00765 189 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 ZNF91Q05481 1191 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 FGFBP1Q14512 234 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 MSMO1Q15800 293 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 NKPD1Q17RQ9 610 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 LYSMD4Q5XG99 296 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 THEM6Q8WUY1 208 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 THAP4Q8WY91 577 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 NEURL2Q9BR09 285 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 MRPL45Q9BRJ2 306 aaKnown RBP4.91□□□□□ -1.62
SCN1A-201ENST00000303395 OR11A1Q9GZK7 315 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 IL26Q9NPH9 171 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 C1orf123Q9NWV4 160 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 PADI1Q9ULC6 663 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 MAP4K5Q9Y4K4 846 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 NRAPQ86VF7 1730 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 CRYBA1P05813 215 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 PTHLHP12272 177 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 MC3RP41968 323 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 CAMLGP49069 296 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 OR10A3P58181 314 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 RNF151Q2KHN1 245 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 TCTE1Q5JU00 501 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 LYRM7Q5U5X0 104 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 EEF1DP3Q658K8 133 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 FCRL6Q6DN72 434 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 ABLIM2Q6H8Q1 611 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 ISLR2Q6UXK2 745 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 DPPA2Q7Z7J5 298 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 OR2M3Q8NG83 312 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 OR4Q3Q8NH05 313 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 ALG12Q9BV10 488 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 MRPS30Q9NP92 439 aaKnown RBP4.91□□□□□ -1.62
SCN1A-201ENST00000303395 OSER1Q9NX31 292 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 COQ3Q9NZJ6 369 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 WDR45Q9Y484 360 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 WNT10BO00744 389 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 OR7A17O14581 309 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 TRAF3IP2O43734 574 aaPredicted RBP4.91□□□□□ -1.62
SCN1A-201ENST00000303395 RAB5AP20339 215 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 HOXA4Q00056 320 aaPredicted RBP4.91□□□□□ -1.62
SCN1A-201ENST00000303395 PGGHGQ32M88 737 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 MFSD4AQ8N468 514 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 NANOGP1Q8N7R0 232 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 ZDHHC22Q8N966 263 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 DTWD2Q8NBA8 298 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 POGLUT1Q8NBL1 392 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 OR1E3Q8WZA6 343 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 ZNF583Q96ND8 569 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 PDGFDQ9GZP0 370 aaPredicted RBP4.91□□□□□ -1.62
SCN1A-201ENST00000303395 GRHPRQ9UBQ7 328 aa4.91□□□□□ -1.62
SCN1A-201ENST00000303395 HHLA2Q9UM44 414 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms