RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 NOP53Q9NZM5 478 aaKnown RBP12.9□□□□□ -0.34
CCDC88B-201ENST00000301897 TMED7-TICAM2A0A0A6YYA0 188 aa12.89□□□□□ -0.35
CCDC88B-201ENST00000301897 IGHV4-61A0A0C4DH41 118 aa12.89□□□□□ -0.35
CCDC88B-201ENST00000301897 OR6C65A6NJZ3 312 aa12.89□□□□□ -0.35
CCDC88B-201ENST00000301897 SMIM23A6NLE4 172 aa12.89□□□□□ -0.35
CCDC88B-201ENST00000301897 VSTM5A8MXK1 200 aa12.89□□□□□ -0.35
CCDC88B-201ENST00000301897 FAAHO00519 579 aa12.89□□□□□ -0.35
CCDC88B-201ENST00000301897 TCF21O43680 179 aa12.89□□□□□ -0.35
CCDC88B-201ENST00000301897 CRYAAP02489 173 aa12.89□□□□□ -0.35
CCDC88B-201ENST00000301897 OR12D1P0DN82 309 aa12.89□□□□□ -0.35
CCDC88B-201ENST00000301897 G6PDP11413 515 aa12.89□□□□□ -0.35
CCDC88B-201ENST00000301897 UQCRC2P22695 453 aa12.89□□□□□ -0.35
CCDC88B-201ENST00000301897 IDH2P48735 452 aaKnown RBP12.89□□□□□ -0.35
CCDC88B-201ENST00000301897 KHKP50053 298 aa12.89□□□□□ -0.35
CCDC88B-201ENST00000301897 PPOXP50336 477 aa12.89□□□□□ -0.35
CCDC88B-201ENST00000301897 TXNL4AP83876 142 aaKnown RBP12.89□□□□□ -0.35
CCDC88B-201ENST00000301897 EMX2Q04743 252 aa12.89□□□□□ -0.35
CCDC88B-201ENST00000301897 GNA13Q14344 377 aa12.89□□□□□ -0.35
CCDC88B-201ENST00000301897 CR1LQ2VPA4 569 aa12.89□□□□□ -0.35
CCDC88B-201ENST00000301897 C3orf36Q3SXR2 165 aa12.89□□□□□ -0.35
CCDC88B-201ENST00000301897 ANXA8L1Q5VT79 327 aa12.89□□□□□ -0.35
CCDC88B-201ENST00000301897 TYW3Q6IPR3 259 aaKnown RBP12.89□□□□□ -0.35
CCDC88B-201ENST00000301897 FRRS1Q6ZNA5 592 aa12.89□□□□□ -0.35
CCDC88B-201ENST00000301897 IL17RELQ6ZVW7 336 aa12.89□□□□□ -0.35
CCDC88B-201ENST00000301897 OR4A15Q8NGL6 344 aa12.89□□□□□ -0.35
CCDC88B-201ENST00000301897 AGR3Q8TD06 166 aa12.89□□□□□ -0.35
CCDC88B-201ENST00000301897 UBLCP1Q8WVY7 318 aaPredicted RBP12.89□□□□□ -0.35
CCDC88B-201ENST00000301897 C3orf49Q96BT1 292 aa12.89□□□□□ -0.35
CCDC88B-201ENST00000301897 ROPN1LQ96C74 230 aa12.89□□□□□ -0.35
CCDC88B-201ENST00000301897 APOPT1Q96IL0 206 aa12.89□□□□□ -0.35
CCDC88B-201ENST00000301897 C3orf30Q96M34 536 aa12.89□□□□□ -0.35
CCDC88B-201ENST00000301897 RAB1BQ9H0U4 201 aa12.89□□□□□ -0.35
CCDC88B-201ENST00000301897 CA10Q9NS85 328 aa12.89□□□□□ -0.35
CCDC88B-201ENST00000301897 TMEM45AQ9NWC5 275 aa12.89□□□□□ -0.35
CCDC88B-201ENST00000301897 TMED7Q9Y3B3 224 aa12.89□□□□□ -0.35
CCDC88B-201ENST00000301897 PRSS51A0A1B0GVH4 220 aa12.88□□□□□ -0.35
CCDC88B-201ENST00000301897 KRT33AO76009 404 aa12.88□□□□□ -0.35
CCDC88B-201ENST00000301897 SNUPNO95149 360 aaKnown RBP12.88□□□□□ -0.35
CCDC88B-201ENST00000301897 GPIP06744 558 aa12.88□□□□□ -0.35
CCDC88B-201ENST00000301897 CCNA2P20248 432 aa12.88□□□□□ -0.35
CCDC88B-201ENST00000301897 PCMT1P22061 227 aa12.88□□□□□ -0.35
CCDC88B-201ENST00000301897 SLC1A3P43003 542 aa12.88□□□□□ -0.35
CCDC88B-201ENST00000301897 EFNB3Q15768 340 aa12.88□□□□□ -0.35
CCDC88B-201ENST00000301897 OR4F3Q6IEY1 312 aa12.88□□□□□ -0.35
CCDC88B-201ENST00000301897 TNFAIP8L2Q6P589 184 aaPredicted RBP12.88□□□□□ -0.35
CCDC88B-201ENST00000301897 AAED1Q7RTV5 226 aa12.88□□□□□ -0.35
CCDC88B-201ENST00000301897 CLECL1Q8IZS7 167 aa12.88□□□□□ -0.35
CCDC88B-201ENST00000301897 OR4F15Q8NGB8 312 aa12.88□□□□□ -0.35
CCDC88B-201ENST00000301897 OR9K2Q8NGE7 335 aa12.88□□□□□ -0.35
CCDC88B-201ENST00000301897 KIF18AQ8NI77 898 aa12.88□□□□□ -0.35
CCDC88B-201ENST00000301897 EPS8L3Q8TE67 593 aaKnown RBP12.88□□□□□ -0.35
CCDC88B-201ENST00000301897 HPS1Q92902 700 aa12.88□□□□□ -0.35
CCDC88B-201ENST00000301897 DNAJA3Q96EY1 480 aa12.88□□□□□ -0.35
CCDC88B-201ENST00000301897 OSGIN1Q9UJX0 560 aa12.88□□□□□ -0.35
CCDC88B-201ENST00000301897 TENM1Q9UKZ4 2725 aa12.88□□□□□ -0.35
CCDC88B-201ENST00000301897 IGHV1-18A0A0C4DH31 117 aa12.87□□□□□ -0.35
CCDC88B-201ENST00000301897 ZNF587BE7ETH6 402 aa12.87□□□□□ -0.35
CCDC88B-201ENST00000301897 BCAS1O75363 584 aaPredicted RBP12.87□□□□□ -0.35
CCDC88B-201ENST00000301897 SKAP2O75563 359 aaPredicted RBP12.87□□□□□ -0.35
CCDC88B-201ENST00000301897 VAMP5O95183 116 aa12.87□□□□□ -0.35
CCDC88B-201ENST00000301897 IMPDH2P12268 514 aa12.87□□□□□ -0.35
CCDC88B-201ENST00000301897 HOXB1P14653 301 aaPredicted RBP12.87□□□□□ -0.35
CCDC88B-201ENST00000301897 GIFP27352 417 aa12.87□□□□□ -0.35
CCDC88B-201ENST00000301897 ANXA11P50995 505 aaKnown RBP12.87□□□□□ -0.35
CCDC88B-201ENST00000301897 IDH3GP51553 393 aaPredicted RBP12.87□□□□□ -0.35
CCDC88B-201ENST00000301897 CHN2P52757 468 aa12.87□□□□□ -0.35
CCDC88B-201ENST00000301897 UBE2NP61088 152 aaKnown RBP12.87□□□□□ -0.35
CCDC88B-201ENST00000301897 DPY19L1Q2PZI1 675 aa12.87□□□□□ -0.35
CCDC88B-201ENST00000301897 GPAT3Q53EU6 434 aa12.87□□□□□ -0.35
CCDC88B-201ENST00000301897 OTUD3Q5T2D3 398 aaPredicted RBP12.87□□□□□ -0.35
CCDC88B-201ENST00000301897 OLIG3Q7RTU3 272 aa12.87□□□□□ -0.35
CCDC88B-201ENST00000301897 SPATA19Q7Z5L4 167 aa12.87□□□□□ -0.35
CCDC88B-201ENST00000301897 GSPT2Q8IYD1 628 aaKnown RBP12.87□□□□□ -0.35
CCDC88B-201ENST00000301897 ZNF440Q8IYI8 595 aa12.87□□□□□ -0.35
CCDC88B-201ENST00000301897 FAM169BQ8N8A8 192 aa12.87□□□□□ -0.35
CCDC88B-201ENST00000301897 NEURL3Q96EH8 262 aa12.87□□□□□ -0.35
CCDC88B-201ENST00000301897 MECRQ9BV79 373 aa12.87□□□□□ -0.35
CCDC88B-201ENST00000301897 BPESC1Q9GZL8 116 aa12.87□□□□□ -0.35
CCDC88B-201ENST00000301897 PLK3Q9H4B4 646 aa12.87□□□□□ -0.35
CCDC88B-201ENST00000301897 PCDHB14Q9Y5E9 798 aa12.87□□□□□ -0.35
CCDC88B-201ENST00000301897 ARPC4-TTLL3A0A0A6YYG9 625 aa12.86□□□□□ -0.35
CCDC88B-201ENST00000301897 TMEM72A0PK05 275 aa12.86□□□□□ -0.35
CCDC88B-201ENST00000301897 AQP7P3A6NL99 342 aa12.86□□□□□ -0.35
CCDC88B-201ENST00000301897 TACSTD2P09758 323 aa12.86□□□□□ -0.35
CCDC88B-201ENST00000301897 NUDT17P0C025 328 aa12.86□□□□□ -0.35
CCDC88B-201ENST00000301897 OR4A8P0C604 315 aa12.86□□□□□ -0.35
CCDC88B-201ENST00000301897 CDH2P19022 906 aaPredicted RBP12.86□□□□□ -0.35
CCDC88B-201ENST00000301897 TACR3P29371 465 aa12.86□□□□□ -0.35
CCDC88B-201ENST00000301897 CHI3L1P36222 383 aaPredicted RBP12.86□□□□□ -0.35
CCDC88B-201ENST00000301897 SRP14P37108 136 aaKnown RBP12.86□□□□□ -0.35
CCDC88B-201ENST00000301897 SH3BGRP55822 239 aaPredicted RBP12.86□□□□□ -0.35
CCDC88B-201ENST00000301897 SRSF2Q01130 221 aaKnown RBP12.86□□□□□ -0.35
CCDC88B-201ENST00000301897 ADIPOQQ15848 244 aa12.86□□□□□ -0.35
CCDC88B-201ENST00000301897 GSTA3Q16772 222 aa12.86□□□□□ -0.35
CCDC88B-201ENST00000301897 TBRG1Q3YBR2 411 aa12.86□□□□□ -0.35
CCDC88B-201ENST00000301897 HIKESHIQ53FT3 197 aa12.86□□□□□ -0.35
CCDC88B-201ENST00000301897 SAXO2Q658L1 398 aa12.86□□□□□ -0.35
CCDC88B-201ENST00000301897 CLEC4FQ8N1N0 589 aa12.86□□□□□ -0.35
CCDC88B-201ENST00000301897 RIBC1Q8N443 379 aaPredicted RBP12.86□□□□□ -0.35
CCDC88B-201ENST00000301897 ANKS4BQ8N8V4 417 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms