RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 A0A1W2PPQ1 181 aa11.02□□□□□ -0.65
SHROOM3-201ENST00000296043 TMX2-CTNND1H3BSU7 103 aa11.02□□□□□ -0.65
SHROOM3-201ENST00000296043 TBX18O95935 607 aa11.02□□□□□ -0.65
SHROOM3-201ENST00000296043 SCG5P05408 212 aa11.02□□□□□ -0.65
SHROOM3-201ENST00000296043 PIGAP37287 484 aa11.02□□□□□ -0.65
SHROOM3-201ENST00000296043 LIMK1P53667 647 aa11.02□□□□□ -0.65
SHROOM3-201ENST00000296043 OR2D3Q8NGH3 330 aa11.02□□□□□ -0.65
SHROOM3-201ENST00000296043 PRRC1Q96M27 445 aa11.02□□□□□ -0.65
SHROOM3-201ENST00000296043 ATF6BQ99941 703 aa11.02□□□□□ -0.65
SHROOM3-201ENST00000296043 CSO75390 466 aaKnown RBP11.02□□□□□ -0.65
SHROOM3-201ENST00000296043 SLC2A1P11166 492 aa11.02□□□□□ -0.65
SHROOM3-201ENST00000296043 C11orf42Q8N5U0 333 aa11.02□□□□□ -0.65
SHROOM3-201ENST00000296043 OR4D10Q8NGI6 311 aa11.02□□□□□ -0.65
SHROOM3-201ENST00000296043 HERVK_113Q902F9 699 aa11.02□□□□□ -0.65
SHROOM3-201ENST00000296043 MED18Q9BUE0 208 aa11.02□□□□□ -0.65
SHROOM3-201ENST00000296043 PRDM7Q9NQW5 492 aa11.02□□□□□ -0.65
SHROOM3-201ENST00000296043 INIPQ9NRY2 104 aa11.02□□□□□ -0.65
SHROOM3-201ENST00000296043 CORINQ9Y5Q5 1042 aa11.02□□□□□ -0.65
SHROOM3-201ENST00000296043 CACNA1BQ00975 2339 aa11.02□□□□□ -0.65
SHROOM3-201ENST00000296043 SMIM28A0A1B0GU29 152 aa11.02□□□□□ -0.65
SHROOM3-201ENST00000296043 TGFBR1P36897 503 aa11.02□□□□□ -0.65
SHROOM3-201ENST00000296043 CLDN8P56748 225 aa11.02□□□□□ -0.65
SHROOM3-201ENST00000296043 ABHD12BQ7Z5M8 362 aaPredicted RBP11.02□□□□□ -0.65
SHROOM3-201ENST00000296043 MRPL10Q7Z7H8 261 aaKnown RBP11.02□□□□□ -0.65
SHROOM3-201ENST00000296043 SDR39U1Q9NRG7 319 aaPredicted RBP11.02□□□□□ -0.65
SHROOM3-201ENST00000296043 GPR173Q9NS66 373 aa11.02□□□□□ -0.65
SHROOM3-201ENST00000296043 SEMA4GQ9NTN9 838 aa11.02□□□□□ -0.65
SHROOM3-201ENST00000296043 OARD1Q9Y530 152 aa11.02□□□□□ -0.65
SHROOM3-201ENST00000296043 UBL3O95164 117 aa11.02□□□□□ -0.65
SHROOM3-201ENST00000296043 GABRB1P18505 474 aa11.02□□□□□ -0.65
SHROOM3-201ENST00000296043 S100A7P31151 101 aa11.02□□□□□ -0.65
SHROOM3-201ENST00000296043 GALNT2Q10471 571 aa11.02□□□□□ -0.65
SHROOM3-201ENST00000296043 ZNF383Q8NA42 475 aa11.02□□□□□ -0.65
SHROOM3-201ENST00000296043 TMEM43Q9BTV4 400 aa11.02□□□□□ -0.65
SHROOM3-201ENST00000296043 RNF24Q9Y225 148 aa11.02□□□□□ -0.65
SHROOM3-201ENST00000296043 MED16Q9Y2X0 877 aa11.02□□□□□ -0.65
SHROOM3-201ENST00000296043 GATCO43716 136 aaKnown RBP11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 TRAF3IP2O43734 574 aaPredicted RBP11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 ZNF28P17035 718 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 OR10A3P58181 314 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 MEP1BQ16820 701 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 CD300LGQ6UXG3 332 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 NDUFAF7Q7L592 441 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 SPRED1Q7Z699 444 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 HCAR2Q8TDS4 363 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 XYLT2Q9H1B5 865 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 USP22Q9UPT9 525 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 CLTCQ00610 1675 aaKnown RBP11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 TRAV27A0A087WT01 109 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 A0A1W2PNV4 684 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 BMP1P13497 986 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 PMS2P11Q13670 270 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 IL34Q6ZMJ4 242 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 OR13D1Q8NGV5 346 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 PPP1R14DQ9NXH3 145 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 PCDHA9Q9Y5H5 950 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 ARHGEF28Q8N1W1 1705 aaKnown RBP11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 GNRH1P01148 92 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 PMCHP20382 165 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 ZNF322Q6U7Q0 402 aaPredicted RBP11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 Q6ZN92 141 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 PHYHIPLQ96FC7 376 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 HS3ST4Q9Y661 456 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 ADGRB3O60242 1522 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 CLDN1O95832 211 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 LIPAP38571 399 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 ZNF440Q8IYI8 595 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 OR2T4Q8NH00 348 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 CWH43Q9H720 699 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 ZNF623O75123 536 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 PLPPR4Q7Z2D5 763 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 KIAA1958Q8N8K9 716 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 LYSMD1Q96S90 227 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 TIMM29Q9BSF4 260 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 PDE7BQ9NP56 450 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 FEZF1A0PJY2 475 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 SMIM6P0DI80 62 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 GPX3P22352 226 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 FPR3P25089 353 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 SELENBP1Q13228 472 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 CYB5D2Q8WUJ1 264 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 ACOD1A6NK06 481 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 GPR39O43194 453 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 RAB40ALP0C0E4 278 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 CXCR4P61073 352 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 ZNF91Q05481 1191 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 MALLQ13021 153 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 VARS2Q5ST30 1063 aaKnown RBP11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 TPRA1Q86W33 373 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 OR56B1Q8NGI3 324 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 APH1BQ8WW43 257 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 RAB40AQ8WXH6 277 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 OR5M11Q96RB7 305 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 KNDC1Q76NI1 1749 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 MEGF11A6BM72 1044 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 EMC8O43402 210 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 TMEM183BQ1AE95 376 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 PRSS42Q7Z5A4 293 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 OR5P2Q8WZ92 322 aa11.01□□□□□ -0.65
SHROOM3-201ENST00000296043 ECHDC3Q96DC8 303 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms