RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 CH25HO95992 272 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 SMIM18P0DKX4 95 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 SPINK2P20155 84 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 CRHBPP24387 322 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 CASRP41180 1078 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 OC90Q02509 493 aaPredicted RBP16.69■□□□□ 0.26
CLN3-254ENST00000637050 FOXF1Q12946 379 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 TUBA3CQ13748 450 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 CLEC12AQ5QGZ9 265 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 TUBA3EQ6PEY2 450 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 CCDC103Q8IW40 242 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 SLC43A2Q8N370 569 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 OR51A7Q8NH64 312 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 TRUB1Q8WWH5 349 aaKnown RBP16.69■□□□□ 0.26
CLN3-254ENST00000637050 KTI12Q96EK9 354 aaPredicted RBP16.69■□□□□ 0.26
CLN3-254ENST00000637050 TNFRSF13CQ96RJ3 184 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 UTP23Q9BRU9 249 aaKnown RBP16.69■□□□□ 0.26
CLN3-254ENST00000637050 ADNPQ9H2P0 1102 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 MCCC2Q9HCC0 563 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 LRFN1Q9P244 771 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 TRAV36DV7A0A075B6V5 113 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 A8MVM7 634 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 LRRN3E7EW58 273 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 G3V3Y1 287 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 SLC1A7O00341 560 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 SLC25A12O75746 678 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 SMNDC1O75940 238 aaKnown RBP eCLIP16.69■□□□□ 0.26
CLN3-254ENST00000637050 CCDC159P0C7I6 412 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 FMO3P31513 532 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 MASP1P48740 699 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 SNRPGP62308 76 aaKnown RBP16.69■□□□□ 0.26
CLN3-254ENST00000637050 EFNB1P98172 346 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 CDC20Q12834 499 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 TIGD3Q6B0B8 471 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 C5orf46Q6UWT4 87 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 PTCHD4Q6ZW05 846 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 LRRC17Q8N6Y2 441 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 OR2T33Q8NG76 320 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 OR52L1Q8NGH7 329 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 OR1J4Q8NGS1 313 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 OR4Q3Q8NH05 313 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 POC1BQ8TC44 478 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 STK35Q8TDR2 534 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 FGF11Q92914 225 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 TAAR8Q969N4 342 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 POLDIP3Q9BY77 421 aaKnown RBP16.69■□□□□ 0.26
CLN3-254ENST00000637050 ENKD1Q9H0I2 346 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 UBQLN3Q9H347 655 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 TIMMDC1Q9NPL8 285 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 TVP23BQ9NYZ1 205 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 CHRNA9Q9UGM1 479 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 POLHQ9Y253 713 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 ZNF337Q9Y3M9 751 aa16.69■□□□□ 0.26
CLN3-254ENST00000637050 EML6Q6ZMW3 1958 aa16.68■□□□□ 0.26
CLN3-254ENST00000637050 A0A087WZY1 265 aa16.68■□□□□ 0.26
CLN3-254ENST00000637050 ZC3H12DA2A288 527 aaKnown RBP16.68■□□□□ 0.26
CLN3-254ENST00000637050 NEURL1O76050 574 aa16.68■□□□□ 0.26
CLN3-254ENST00000637050 WDPCPO95876 746 aa16.68■□□□□ 0.26
CLN3-254ENST00000637050 BMP7P18075 431 aa16.68■□□□□ 0.26
CLN3-254ENST00000637050 PCYT1AP49585 367 aa16.68■□□□□ 0.26
CLN3-254ENST00000637050 MAP2K6P52564 334 aa16.68■□□□□ 0.26
CLN3-254ENST00000637050 RPS4XP62701 263 aaKnown RBP16.68■□□□□ 0.26
CLN3-254ENST00000637050 LTBQ06643 244 aa16.68■□□□□ 0.26
CLN3-254ENST00000637050 APOFQ13790 326 aa16.68■□□□□ 0.26
CLN3-254ENST00000637050 SMN1Q16637 294 aaKnown RBP16.68■□□□□ 0.26
CLN3-254ENST00000637050 PGGHGQ32M88 737 aa16.68■□□□□ 0.26
CLN3-254ENST00000637050 AGAP7PQ5VUJ5 663 aa16.68■□□□□ 0.26
CLN3-254ENST00000637050 THSD4Q6ZMP0 1018 aa16.68■□□□□ 0.26
CLN3-254ENST00000637050 TSPAN14Q8NG11 270 aa16.68■□□□□ 0.26
CLN3-254ENST00000637050 OR8J1Q8NGP2 316 aa16.68■□□□□ 0.26
CLN3-254ENST00000637050 AGAP4Q96P64 663 aa16.68■□□□□ 0.26
CLN3-254ENST00000637050 MOGAT1Q96PD6 335 aa16.68■□□□□ 0.26
CLN3-254ENST00000637050 IL20RAQ9UHF4 553 aa16.68■□□□□ 0.26
CLN3-254ENST00000637050 A0A0G2JMM0 328 aa16.67■□□□□ 0.26
CLN3-254ENST00000637050 A0A1W2PPB8 328 aa16.67■□□□□ 0.26
CLN3-254ENST00000637050 A0A1W2PRS3 328 aa16.67■□□□□ 0.26
CLN3-254ENST00000637050 KIR3DP1A8MWS1 328 aa16.67■□□□□ 0.26
CLN3-254ENST00000637050 FAM47E-STBD1D6RA91 191 aa16.67■□□□□ 0.26
CLN3-254ENST00000637050 BHLHE40O14503 412 aa16.67■□□□□ 0.26
CLN3-254ENST00000637050 ZNF208O43345 1280 aa16.67■□□□□ 0.26
CLN3-254ENST00000637050 F10P00742 488 aa16.67■□□□□ 0.26
CLN3-254ENST00000637050 BGLAPP02818 100 aa16.67■□□□□ 0.26
CLN3-254ENST00000637050 ASAH2BP0C7U1 165 aa16.67■□□□□ 0.26
CLN3-254ENST00000637050 CNR1P21554 472 aa16.67■□□□□ 0.26
CLN3-254ENST00000637050 DNASE1L1P49184 302 aa16.67■□□□□ 0.26
CLN3-254ENST00000637050 CSNK2BP67870 215 aa16.67■□□□□ 0.26
CLN3-254ENST00000637050 C1QL3Q5VWW1 255 aa16.67■□□□□ 0.26
CLN3-254ENST00000637050 SPINK14Q6IE38 97 aa16.67■□□□□ 0.26
CLN3-254ENST00000637050 LINC00696Q6ZRV3 163 aa16.67■□□□□ 0.26
CLN3-254ENST00000637050 BPIFB6Q8NFQ5 453 aa16.67■□□□□ 0.26
CLN3-254ENST00000637050 KCNE4Q8WWG9 221 aa16.67■□□□□ 0.26
CLN3-254ENST00000637050 GNRHR2Q96P88 292 aa16.67■□□□□ 0.26
CLN3-254ENST00000637050 SIGLEC12Q96PQ1 595 aa16.67■□□□□ 0.26
CLN3-254ENST00000637050 PTDSS2Q9BVG9 487 aa16.67■□□□□ 0.26
CLN3-254ENST00000637050 PRRG3Q9BZD7 231 aa16.67■□□□□ 0.26
CLN3-254ENST00000637050 FKRPQ9H9S5 495 aa16.67■□□□□ 0.26
CLN3-254ENST00000637050 NANSQ9NR45 359 aa16.67■□□□□ 0.26
CLN3-254ENST00000637050 DEPPQ9NTK1 212 aa16.67■□□□□ 0.26
CLN3-254ENST00000637050 GPR83Q9NYM4 423 aa16.67■□□□□ 0.26
CLN3-254ENST00000637050 BLOC1S6Q9UL45 172 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms