RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 EFNA2O43921 213 aa12.92□□□□□ -0.34
USP39-220ENST00000613444 SUSD5O60279 629 aa12.92□□□□□ -0.34
USP39-220ENST00000613444 OR7A10O76100 309 aa12.92□□□□□ -0.34
USP39-220ENST00000613444 SNX4O95219 450 aa12.92□□□□□ -0.34
USP39-220ENST00000613444 CH25HO95992 272 aa12.92□□□□□ -0.34
USP39-220ENST00000613444 F10P00742 488 aa12.92□□□□□ -0.34
USP39-220ENST00000613444 CCNA2P20248 432 aa12.92□□□□□ -0.34
USP39-220ENST00000613444 RRADP55042 308 aa12.92□□□□□ -0.34
USP39-220ENST00000613444 CDC42P60953 191 aa12.92□□□□□ -0.34
USP39-220ENST00000613444 FOXF1Q12946 379 aa12.92□□□□□ -0.34
USP39-220ENST00000613444 SMN1Q16637 294 aaKnown RBP12.92□□□□□ -0.34
USP39-220ENST00000613444 CLEC12AQ5QGZ9 265 aa12.92□□□□□ -0.34
USP39-220ENST00000613444 C1QL3Q5VWW1 255 aa12.92□□□□□ -0.34
USP39-220ENST00000613444 SLC27A4Q6P1M0 643 aa12.92□□□□□ -0.34
USP39-220ENST00000613444 POMZP3Q6PJE2 187 aa12.92□□□□□ -0.34
USP39-220ENST00000613444 OAFQ86UD1 273 aa12.92□□□□□ -0.34
USP39-220ENST00000613444 DEPDC4Q8N2C3 294 aa12.92□□□□□ -0.34
USP39-220ENST00000613444 FANK1Q8TC84 345 aa12.92□□□□□ -0.34
USP39-220ENST00000613444 TAAR8Q969N4 342 aa12.92□□□□□ -0.34
USP39-220ENST00000613444 ZNF566Q969W8 418 aa12.92□□□□□ -0.34
USP39-220ENST00000613444 MOGAT1Q96PD6 335 aa12.92□□□□□ -0.34
USP39-220ENST00000613444 TNFRSF13CQ96RJ3 184 aa12.92□□□□□ -0.34
USP39-220ENST00000613444 PTDSS2Q9BVG9 487 aa12.92□□□□□ -0.34
USP39-220ENST00000613444 TSSK6Q9BXA6 273 aa12.92□□□□□ -0.34
USP39-220ENST00000613444 DEPPQ9NTK1 212 aa12.92□□□□□ -0.34
USP39-220ENST00000613444 LRFN1Q9P244 771 aa12.92□□□□□ -0.34
USP39-220ENST00000613444 APC2O95996 2303 aa12.92□□□□□ -0.34
USP39-220ENST00000613444 DMXL2Q8TDJ6 3036 aa12.92□□□□□ -0.34
USP39-220ENST00000613444 SHISA8B8ZZ34 492 aa12.91□□□□□ -0.34
USP39-220ENST00000613444 SLC1A7O00341 560 aa12.91□□□□□ -0.34
USP39-220ENST00000613444 TLX3O43711 291 aaPredicted RBP12.91□□□□□ -0.34
USP39-220ENST00000613444 SMNDC1O75940 238 aaKnown RBP eCLIP12.91□□□□□ -0.34
USP39-220ENST00000613444 WDPCPO95876 746 aa12.91□□□□□ -0.34
USP39-220ENST00000613444 FMO3P31513 532 aa12.91□□□□□ -0.34
USP39-220ENST00000613444 SMSP52788 366 aa12.91□□□□□ -0.34
USP39-220ENST00000613444 CXCR4P61073 352 aa12.91□□□□□ -0.34
USP39-220ENST00000613444 RPS4XP62701 263 aaKnown RBP12.91□□□□□ -0.34
USP39-220ENST00000613444 FOXK1P85037 733 aa12.91□□□□□ -0.34
USP39-220ENST00000613444 APOFQ13790 326 aa12.91□□□□□ -0.34
USP39-220ENST00000613444 ZBED5Q49AG3 693 aa12.91□□□□□ -0.34
USP39-220ENST00000613444 RBM48Q5RL73 367 aaKnown RBP12.91□□□□□ -0.34
USP39-220ENST00000613444 TIGD3Q6B0B8 471 aa12.91□□□□□ -0.34
USP39-220ENST00000613444 SPINK14Q6IE38 97 aa12.91□□□□□ -0.34
USP39-220ENST00000613444 TMEM154Q6P9G4 183 aa12.91□□□□□ -0.34
USP39-220ENST00000613444 OR51A7Q8NH64 312 aa12.91□□□□□ -0.34
USP39-220ENST00000613444 MRGPRX4Q96LA9 322 aa12.91□□□□□ -0.34
USP39-220ENST00000613444 GNRHR2Q96P88 292 aa12.91□□□□□ -0.34
USP39-220ENST00000613444 SIGLEC12Q96PQ1 595 aa12.91□□□□□ -0.34
USP39-220ENST00000613444 UBQLN3Q9H347 655 aa12.91□□□□□ -0.34
USP39-220ENST00000613444 SACM1LQ9NTJ5 587 aa12.91□□□□□ -0.34
USP39-220ENST00000613444 TBC1D23Q9NUY8 699 aa12.91□□□□□ -0.34
USP39-220ENST00000613444 BHLHE40O14503 412 aa12.91□□□□□ -0.34
USP39-220ENST00000613444 HCN1O60741 890 aa12.91□□□□□ -0.34
USP39-220ENST00000613444 P04436 131 aa12.91□□□□□ -0.34
USP39-220ENST00000613444 ASAH2BP0C7U1 165 aa12.91□□□□□ -0.34
USP39-220ENST00000613444 IL11P20809 199 aa12.91□□□□□ -0.34
USP39-220ENST00000613444 APOBEC1P41238 236 aaKnown RBP12.91□□□□□ -0.34
USP39-220ENST00000613444 SLC9A3P48764 834 aa12.91□□□□□ -0.34
USP39-220ENST00000613444 DNASE1L1P49184 302 aa12.91□□□□□ -0.34
USP39-220ENST00000613444 ZNF41P51814 821 aaPredicted RBP12.91□□□□□ -0.34
USP39-220ENST00000613444 SNRPGP62308 76 aaKnown RBP12.91□□□□□ -0.34
USP39-220ENST00000613444 OC90Q02509 493 aaPredicted RBP12.91□□□□□ -0.34
USP39-220ENST00000613444 TEKQ02763 1124 aa12.91□□□□□ -0.34
USP39-220ENST00000613444 CDC20Q12834 499 aa12.91□□□□□ -0.34
USP39-220ENST00000613444 RPL13AP3Q6NVV1 102 aa12.91□□□□□ -0.34
USP39-220ENST00000613444 SMARCD3Q6STE5 483 aa12.91□□□□□ -0.34
USP39-220ENST00000613444 LINC00696Q6ZRV3 163 aa12.91□□□□□ -0.34
USP39-220ENST00000613444 OR4K17Q8NGC6 315 aa12.91□□□□□ -0.34
USP39-220ENST00000613444 SGCDQ92629 289 aa12.91□□□□□ -0.34
USP39-220ENST00000613444 PAK1IP1Q9NWT1 392 aaPredicted RBP12.91□□□□□ -0.34
USP39-220ENST00000613444 IMPAD1Q9NX62 359 aa12.91□□□□□ -0.34
USP39-220ENST00000613444 ZNF891A8MT65 544 aaPredicted RBP12.9□□□□□ -0.34
USP39-220ENST00000613444 A8MVM7 634 aa12.9□□□□□ -0.34
USP39-220ENST00000613444 XPNPEP2O43895 674 aa12.9□□□□□ -0.34
USP39-220ENST00000613444 PRKYO43930 277 aa12.9□□□□□ -0.34
USP39-220ENST00000613444 RCBTB2O95199 551 aa12.9□□□□□ -0.34
USP39-220ENST00000613444 BGLAPP02818 100 aa12.9□□□□□ -0.34
USP39-220ENST00000613444 TSPAN19P0C672 248 aa12.9□□□□□ -0.34
USP39-220ENST00000613444 CCDC159P0C7I6 412 aa12.9□□□□□ -0.34
USP39-220ENST00000613444 CDH15P55291 814 aa12.9□□□□□ -0.34
USP39-220ENST00000613444 PGGHGQ32M88 737 aa12.9□□□□□ -0.34
USP39-220ENST00000613444 OR1J4Q8NGS1 313 aa12.9□□□□□ -0.34
USP39-220ENST00000613444 STK35Q8TDR2 534 aa12.9□□□□□ -0.34
USP39-220ENST00000613444 TRUB1Q8WWH5 349 aaKnown RBP12.9□□□□□ -0.34
USP39-220ENST00000613444 UTP23Q9BRU9 249 aaKnown RBP12.9□□□□□ -0.34
USP39-220ENST00000613444 POLDIP3Q9BY77 421 aaKnown RBP12.9□□□□□ -0.34
USP39-220ENST00000613444 OR11A1Q9GZK7 315 aa12.9□□□□□ -0.34
USP39-220ENST00000613444 ADNPQ9H2P0 1102 aa12.9□□□□□ -0.34
USP39-220ENST00000613444 ZNF552Q9H707 407 aaPredicted RBP12.9□□□□□ -0.34
USP39-220ENST00000613444 PTGES2Q9H7Z7 377 aa12.9□□□□□ -0.34
USP39-220ENST00000613444 TVP23BQ9NYZ1 205 aa12.9□□□□□ -0.34
USP39-220ENST00000613444 PLA2G3Q9NZ20 509 aa12.9□□□□□ -0.34
USP39-220ENST00000613444 CHRNA9Q9UGM1 479 aa12.9□□□□□ -0.34
USP39-220ENST00000613444 SCOCQ9UIL1 159 aa12.9□□□□□ -0.34
USP39-220ENST00000613444 ZNF337Q9Y3M9 751 aa12.9□□□□□ -0.34
USP39-220ENST00000613444 ACACAQ13085 2346 aa12.9□□□□□ -0.34
USP39-220ENST00000613444 TRAV36DV7A0A075B6V5 113 aa12.9□□□□□ -0.34
USP39-220ENST00000613444 LRRC3CA6NJW4 275 aa12.9□□□□□ -0.34
USP39-220ENST00000613444 A6NL46 340 aa12.9□□□□□ -0.34
USP39-220ENST00000613444 TRIM64CA6NLI5 447 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms