RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 EXOC3L2Q2M3D2 409 aa11.46□□□□□ -0.57
UPF1-208ENST00000600012 ZNF791Q3KP31 576 aaPredicted RBP11.46□□□□□ -0.57
UPF1-208ENST00000600012 SLC25A35Q3KQZ1 300 aa11.46□□□□□ -0.57
UPF1-208ENST00000600012 FGD3Q5JSP0 725 aa11.46□□□□□ -0.57
UPF1-208ENST00000600012 WLSQ5T9L3 541 aa11.46□□□□□ -0.57
UPF1-208ENST00000600012 ANKRD34AQ69YU3 496 aa11.46□□□□□ -0.57
UPF1-208ENST00000600012 BICRALQ6AI39 1079 aa11.46□□□□□ -0.57
UPF1-208ENST00000600012 RTL6Q6ICC9 239 aa11.46□□□□□ -0.57
UPF1-208ENST00000600012 NUP54Q7Z3B4 507 aa11.46□□□□□ -0.57
UPF1-208ENST00000600012 STK32CQ86UX6 486 aa11.46□□□□□ -0.57
UPF1-208ENST00000600012 GALNT4Q8N4A0 578 aa11.46□□□□□ -0.57
UPF1-208ENST00000600012 CBR4Q8N4T8 237 aa11.46□□□□□ -0.57
UPF1-208ENST00000600012 PIK3C3Q8NEB9 887 aa11.46□□□□□ -0.57
UPF1-208ENST00000600012 FAM71CQ8NEG0 241 aa11.46□□□□□ -0.57
UPF1-208ENST00000600012 OR4C15Q8NGM1 316 aa11.46□□□□□ -0.57
UPF1-208ENST00000600012 TMCO6Q96DC7 493 aa11.46□□□□□ -0.57
UPF1-208ENST00000600012 EPYCQ99645 322 aa11.46□□□□□ -0.57
UPF1-208ENST00000600012 KLHDC3Q9BQ90 382 aa11.46□□□□□ -0.57
UPF1-208ENST00000600012 C9orf16Q9BUW7 83 aa11.46□□□□□ -0.57
UPF1-208ENST00000600012 LDAHQ9H6V9 325 aa11.46□□□□□ -0.57
UPF1-208ENST00000600012 EVA1AQ9H8M9 152 aa11.46□□□□□ -0.57
UPF1-208ENST00000600012 Q9UFV3 132 aa11.46□□□□□ -0.57
UPF1-208ENST00000600012 ACAD8Q9UKU7 415 aa11.46□□□□□ -0.57
UPF1-208ENST00000600012 NCKAP5O14513 1909 aa11.45□□□□□ -0.58
UPF1-208ENST00000600012 TRBV4-1A0A0J9YWV2 114 aa11.45□□□□□ -0.58
UPF1-208ENST00000600012 FAM221AA4D161 298 aa11.45□□□□□ -0.58
UPF1-208ENST00000600012 C2orf72A6NCS6 295 aa11.45□□□□□ -0.58
UPF1-208ENST00000600012 G3V2T6 193 aa11.45□□□□□ -0.58
UPF1-208ENST00000600012 H3BNH8 94 aa11.45□□□□□ -0.58
UPF1-208ENST00000600012 GTPBP1O00178 669 aaKnown RBP11.45□□□□□ -0.58
UPF1-208ENST00000600012 EI24O14681 340 aa11.45□□□□□ -0.58
UPF1-208ENST00000600012 ZNF264O43296 627 aa11.45□□□□□ -0.58
UPF1-208ENST00000600012 HCN1O60741 890 aa11.45□□□□□ -0.58
UPF1-208ENST00000600012 NTN1O95631 604 aa11.45□□□□□ -0.58
UPF1-208ENST00000600012 THY1P04216 161 aa11.45□□□□□ -0.58
UPF1-208ENST00000600012 H1F0P07305 194 aaKnown RBP11.45□□□□□ -0.58
UPF1-208ENST00000600012 CCL3P10147 92 aa11.45□□□□□ -0.58
UPF1-208ENST00000600012 GABRA1P14867 456 aa11.45□□□□□ -0.58
UPF1-208ENST00000600012 PRKACGP22612 351 aa11.45□□□□□ -0.58
UPF1-208ENST00000600012 RYKP34925 604 aa11.45□□□□□ -0.58
UPF1-208ENST00000600012 ADH7P40394 386 aa11.45□□□□□ -0.58
UPF1-208ENST00000600012 ACAA2P42765 397 aaKnown RBP11.45□□□□□ -0.58
UPF1-208ENST00000600012 DNASE1L1P49184 302 aa11.45□□□□□ -0.58
UPF1-208ENST00000600012 EPS8Q12929 822 aa11.45□□□□□ -0.58
UPF1-208ENST00000600012 SLC10A1Q14973 349 aa11.45□□□□□ -0.58
UPF1-208ENST00000600012 OR1Q1Q15612 314 aa11.45□□□□□ -0.58
UPF1-208ENST00000600012 OTUD3Q5T2D3 398 aaPredicted RBP11.45□□□□□ -0.58
UPF1-208ENST00000600012 C1orf185Q5T7R7 199 aa11.45□□□□□ -0.58
UPF1-208ENST00000600012 SHQ1Q6PI26 577 aaKnown RBP11.45□□□□□ -0.58
UPF1-208ENST00000600012 CBLN3Q6UW01 205 aa11.45□□□□□ -0.58
UPF1-208ENST00000600012 IZUMO2Q6UXV1 221 aa11.45□□□□□ -0.58
UPF1-208ENST00000600012 ZBTB49Q6ZSB9 765 aa11.45□□□□□ -0.58
UPF1-208ENST00000600012 ZNF550Q7Z398 422 aa11.45□□□□□ -0.58
UPF1-208ENST00000600012 ZDHHC13Q8IUH4 622 aa11.45□□□□□ -0.58
UPF1-208ENST00000600012 OFCC1Q8IZS5 231 aa11.45□□□□□ -0.58
UPF1-208ENST00000600012 SVOPLQ8N434 492 aa11.45□□□□□ -0.58
UPF1-208ENST00000600012 ADAMTS16Q8TE57 1224 aa11.45□□□□□ -0.58
UPF1-208ENST00000600012 RNF138Q8WVD3 245 aa11.45□□□□□ -0.58
UPF1-208ENST00000600012 NINJ1Q92982 152 aa11.45□□□□□ -0.58
UPF1-208ENST00000600012 SLC41A3Q96GZ6 507 aa11.45□□□□□ -0.58
UPF1-208ENST00000600012 DHRS1Q96LJ7 313 aa11.45□□□□□ -0.58
UPF1-208ENST00000600012 FOXC2Q99958 501 aa11.45□□□□□ -0.58
UPF1-208ENST00000600012 FNDC11Q9BVV2 318 aa11.45□□□□□ -0.58
UPF1-208ENST00000600012 VCX3BQ9H321 246 aa11.45□□□□□ -0.58
UPF1-208ENST00000600012 EXO5Q9H790 373 aa11.45□□□□□ -0.58
UPF1-208ENST00000600012 METTL7AQ9H8H3 244 aa11.45□□□□□ -0.58
UPF1-208ENST00000600012 NMNAT1Q9HAN9 279 aaPredicted RBP11.45□□□□□ -0.58
UPF1-208ENST00000600012 GALNT9Q9HCQ5 603 aa11.45□□□□□ -0.58
UPF1-208ENST00000600012 MAN2C1Q9NTJ4 1040 aa11.45□□□□□ -0.58
UPF1-208ENST00000600012 ACER3Q9NUN7 267 aa11.45□□□□□ -0.58
UPF1-208ENST00000600012 TUBA8Q9NY65 449 aaPredicted RBP11.45□□□□□ -0.58
UPF1-208ENST00000600012 KLRF1Q9NZS2 232 aa11.45□□□□□ -0.58
UPF1-208ENST00000600012 NF1P21359 2839 aa11.45□□□□□ -0.58
UPF1-208ENST00000600012 TRGV5A0A0B4J1U4 118 aa11.44□□□□□ -0.58
UPF1-208ENST00000600012 TP53I11O14683 189 aa11.44□□□□□ -0.58
UPF1-208ENST00000600012 HCRTR2O43614 444 aa11.44□□□□□ -0.58
UPF1-208ENST00000600012 OR5F1O95221 314 aa11.44□□□□□ -0.58
UPF1-208ENST00000600012 CELA3AP09093 270 aa11.44□□□□□ -0.58
UPF1-208ENST00000600012 CD99P14209 185 aa11.44□□□□□ -0.58
UPF1-208ENST00000600012 ZNF26P17031 533 aaPredicted RBP11.44□□□□□ -0.58
UPF1-208ENST00000600012 PTNP21246 168 aa11.44□□□□□ -0.58
UPF1-208ENST00000600012 PEX19P40855 299 aa11.44□□□□□ -0.58
UPF1-208ENST00000600012 PTGDSP41222 190 aa11.44□□□□□ -0.58
UPF1-208ENST00000600012 LIMS1P48059 325 aa11.44□□□□□ -0.58
UPF1-208ENST00000600012 CLK3P49761 638 aaKnown RBP11.44□□□□□ -0.58
UPF1-208ENST00000600012 GAS1P54826 345 aa11.44□□□□□ -0.58
UPF1-208ENST00000600012 AQP4P55087 323 aa11.44□□□□□ -0.58
UPF1-208ENST00000600012 DLX5P56178 289 aa11.44□□□□□ -0.58
UPF1-208ENST00000600012 PRAMEF20Q5VT98 475 aa11.44□□□□□ -0.58
UPF1-208ENST00000600012 HIPK1Q86Z02 1210 aa11.44□□□□□ -0.58
UPF1-208ENST00000600012 ZNF440Q8IYI8 595 aa11.44□□□□□ -0.58
UPF1-208ENST00000600012 OR9Q2Q8NGE9 314 aa11.44□□□□□ -0.58
UPF1-208ENST00000600012 NRGNQ92686 78 aa11.44□□□□□ -0.58
UPF1-208ENST00000600012 SLC35B4Q969S0 331 aa11.44□□□□□ -0.58
UPF1-208ENST00000600012 POM121Q96HA1 1249 aa11.44□□□□□ -0.58
UPF1-208ENST00000600012 ALPK1Q96QP1 1244 aa11.44□□□□□ -0.58
UPF1-208ENST00000600012 TMUB1Q9BVT8 246 aa11.44□□□□□ -0.58
UPF1-208ENST00000600012 OSBPL11Q9BXB4 747 aa11.44□□□□□ -0.58
UPF1-208ENST00000600012 LAT2Q9GZY6 243 aa11.44□□□□□ -0.58
UPF1-208ENST00000600012 CXXC4Q9H2H0 198 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms