RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 MUS81Q96NY9 551 aa7.55□□□□□ -1.2
SHKBP1-220ENST00000599716 VRK1Q99986 396 aaPredicted RBP7.55□□□□□ -1.2
SHKBP1-220ENST00000599716 USB1Q9BQ65 265 aaKnown RBP7.55□□□□□ -1.2
SHKBP1-220ENST00000599716 DUSP26Q9BV47 211 aa7.55□□□□□ -1.2
SHKBP1-220ENST00000599716 CCDC106Q9BWC9 280 aa7.55□□□□□ -1.2
SHKBP1-220ENST00000599716 OR51I1Q9H343 314 aa7.55□□□□□ -1.2
SHKBP1-220ENST00000599716 SLC17A5Q9NRA2 495 aa7.55□□□□□ -1.2
SHKBP1-220ENST00000599716 TAS2R16Q9NYV7 291 aa7.55□□□□□ -1.2
SHKBP1-220ENST00000599716 MALT1Q9UDY8 824 aa7.55□□□□□ -1.2
SHKBP1-220ENST00000599716 CHRNA9Q9UGM1 479 aa7.55□□□□□ -1.2
SHKBP1-220ENST00000599716 ZDHHC2Q9UIJ5 367 aa7.55□□□□□ -1.2
SHKBP1-220ENST00000599716 KCNS2Q9ULS6 477 aa7.55□□□□□ -1.2
SHKBP1-220ENST00000599716 MGAT4BQ9UQ53 548 aa7.55□□□□□ -1.2
SHKBP1-220ENST00000599716 IGHV1-18A0A0C4DH31 117 aa7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 TMEM72A0PK05 275 aa7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 TMEM114B3SHH9 223 aa7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 PDLIM1O00151 329 aa7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 NR5A2O00482 541 aa7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 TRIM13O60858 407 aa7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 DNAJA2O60884 412 aa7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 LYPLA1O75608 230 aaPredicted RBP7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 RGS9O75916 674 aaPredicted RBP7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 CPSF4O95639 269 aaKnown RBP7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 HSPA4LO95757 839 aa7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 TGFAP01135 160 aa7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 APEHP13798 732 aaKnown RBP7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 PGCP20142 388 aa7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 NR4A2P43354 598 aa7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 CCT5P48643 541 aa7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 IDH2P48735 452 aaKnown RBP7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 PDLIM4P50479 330 aa7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 DSCR9P59020 149 aa7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 CSNK2A1P68400 391 aaPredicted RBP7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 PHC1P78364 1004 aa7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 PDCD2Q16342 344 aaPredicted RBP7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 SWI5Q1ZZU3 235 aa7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 CR1LQ2VPA4 569 aa7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 IQCCQ4KMZ1 466 aa7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 C6orf136Q5SQH8 315 aa7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 TYW3Q6IPR3 259 aaKnown RBP7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 FAM166AQ6J272 317 aa7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 EMBQ6PCB8 327 aa7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 EIF3MQ7L2H7 374 aaKnown RBP7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 C16orf62Q7Z3J2 963 aa7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 SPATA19Q7Z5L4 167 aa7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 MYPOPQ86VE0 399 aaPredicted RBP7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 RIMKLAQ8IXN7 391 aa7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 DEPDC4Q8N2C3 294 aa7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 SFXN5Q8TD22 340 aa7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 UBLCP1Q8WVY7 318 aaPredicted RBP7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 XAGE5Q8WWM1 108 aa7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 ST8SIA1Q92185 356 aa7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 CNOT9Q92600 299 aaKnown RBP7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 ZBTB9Q96C00 473 aa7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 COQ8BQ96D53 544 aa7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 ZNF385AQ96PM9 386 aaKnown RBP7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 BHLHE41Q9C0J9 482 aaPredicted RBP7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 BPESC1Q9GZL8 116 aa7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 NMUR2Q9GZQ4 415 aa7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 ZNF350Q9GZX5 532 aa7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 HHATLQ9HCP6 504 aa7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 SERINC1Q9NRX5 453 aa7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 TMEM160Q9NX00 188 aa7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 EMC3Q9P0I2 261 aa7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 UPB1Q9UBR1 384 aa7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 LPAR3Q9UBY5 353 aa7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 TMED5Q9Y3A6 229 aa7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 FLVCR1Q9Y5Y0 555 aa7.54□□□□□ -1.2
SHKBP1-220ENST00000599716 TMED7-TICAM2A0A0A6YYA0 188 aa7.53□□□□□ -1.2
SHKBP1-220ENST00000599716 TLDC2A0PJX2 215 aa7.53□□□□□ -1.2
SHKBP1-220ENST00000599716 LYNX1G3V0Z9 82 aa7.53□□□□□ -1.2
SHKBP1-220ENST00000599716 H3BQF6 201 aa7.53□□□□□ -1.2
SHKBP1-220ENST00000599716 STX11O75558 287 aa7.53□□□□□ -1.2
SHKBP1-220ENST00000599716 AKR7A3O95154 331 aa7.53□□□□□ -1.2
SHKBP1-220ENST00000599716 PMS2P2O95744 297 aa7.53□□□□□ -1.2
SHKBP1-220ENST00000599716 LGI1O95970 557 aa7.53□□□□□ -1.2
SHKBP1-220ENST00000599716 KRT16P08779 473 aa7.53□□□□□ -1.2
SHKBP1-220ENST00000599716 CELA3BP08861 270 aa7.53□□□□□ -1.2
SHKBP1-220ENST00000599716 LYNX1P0DP58 116 aa7.53□□□□□ -1.2
SHKBP1-220ENST00000599716 CREB1P16220 341 aa7.53□□□□□ -1.2
SHKBP1-220ENST00000599716 ITGA2P17301 1181 aa7.53□□□□□ -1.2
SHKBP1-220ENST00000599716 APOBEC3AP31941 199 aaPredicted RBP7.53□□□□□ -1.2
SHKBP1-220ENST00000599716 GZMKP49863 264 aa7.53□□□□□ -1.2
SHKBP1-220ENST00000599716 CHRNB3Q05901 458 aa7.53□□□□□ -1.2
SHKBP1-220ENST00000599716 BNIP2Q12982 314 aa7.53□□□□□ -1.2
SHKBP1-220ENST00000599716 TRIP10Q15642 601 aa7.53□□□□□ -1.2
SHKBP1-220ENST00000599716 ARHGAP11BQ3KRB8 267 aa7.53□□□□□ -1.2
SHKBP1-220ENST00000599716 LSM12Q3MHD2 195 aaKnown RBP7.53□□□□□ -1.2
SHKBP1-220ENST00000599716 ZNF544Q6NX49 715 aa7.53□□□□□ -1.2
SHKBP1-220ENST00000599716 FRRS1Q6ZNA5 592 aa7.53□□□□□ -1.2
SHKBP1-220ENST00000599716 LINGO2Q7L985 606 aa7.53□□□□□ -1.2
SHKBP1-220ENST00000599716 SLC46A3Q7Z3Q1 461 aa7.53□□□□□ -1.2
SHKBP1-220ENST00000599716 IFT20Q8IY31 132 aa7.53□□□□□ -1.2
SHKBP1-220ENST00000599716 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.53□□□□□ -1.2
SHKBP1-220ENST00000599716 TMEM99Q8N816 258 aa7.53□□□□□ -1.2
SHKBP1-220ENST00000599716 ANKFN1Q8N957 763 aa7.53□□□□□ -1.2
SHKBP1-220ENST00000599716 FAM71CQ8NEG0 241 aa7.53□□□□□ -1.2
SHKBP1-220ENST00000599716 MNS1Q8NEH6 495 aa7.53□□□□□ -1.2
SHKBP1-220ENST00000599716 OR4A15Q8NGL6 344 aa7.53□□□□□ -1.2
SHKBP1-220ENST00000599716 PIGXQ8TBF5 258 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms