RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 CSTAP01040 98 aa8.78□□□□□ -1
TRIM28-210ENST00000597618 TFP02787 698 aa8.78□□□□□ -1
TRIM28-210ENST00000597618 MSMBP08118 114 aa8.78□□□□□ -1
TRIM28-210ENST00000597618 SNRPAP09012 282 aaKnown RBP8.78□□□□□ -1
TRIM28-210ENST00000597618 UBTFL6P0CB48 400 aaPredicted RBP8.78□□□□□ -1
TRIM28-210ENST00000597618 CDH2P19022 906 aaPredicted RBP8.78□□□□□ -1
TRIM28-210ENST00000597618 NPR2P20594 1047 aa8.78□□□□□ -1
TRIM28-210ENST00000597618 EFNA1P20827 205 aaPredicted RBP8.78□□□□□ -1
TRIM28-210ENST00000597618 HPCAL1P37235 193 aa8.78□□□□□ -1
TRIM28-210ENST00000597618 ASMTP46597 345 aa8.78□□□□□ -1
TRIM28-210ENST00000597618 CCT3P49368 545 aaKnown RBP8.78□□□□□ -1
TRIM28-210ENST00000597618 OR2B6P58173 313 aa8.78□□□□□ -1
TRIM28-210ENST00000597618 UBE2NP61088 152 aaKnown RBP8.78□□□□□ -1
TRIM28-210ENST00000597618 NAA20P61599 178 aa8.78□□□□□ -1
TRIM28-210ENST00000597618 H3F3AP84243 136 aa8.78□□□□□ -1
TRIM28-210ENST00000597618 IL1RL1Q01638 556 aa8.78□□□□□ -1
TRIM28-210ENST00000597618 NAAAQ02083 359 aa8.78□□□□□ -1
TRIM28-210ENST00000597618 ADRM1Q16186 407 aa8.78□□□□□ -1
TRIM28-210ENST00000597618 PDCD2Q16342 344 aaPredicted RBP8.78□□□□□ -1
TRIM28-210ENST00000597618 TBRG1Q3YBR2 411 aa8.78□□□□□ -1
TRIM28-210ENST00000597618 SPDYE7PQ495Y7 208 aa8.78□□□□□ -1
TRIM28-210ENST00000597618 THSD4Q6ZMP0 1018 aa8.78□□□□□ -1
TRIM28-210ENST00000597618 EIF3MQ7L2H7 374 aaKnown RBP8.78□□□□□ -1
TRIM28-210ENST00000597618 GRINAQ7Z429 371 aa8.78□□□□□ -1
TRIM28-210ENST00000597618 R3HCC1LQ7Z5L2 792 aaKnown RBP8.78□□□□□ -1
TRIM28-210ENST00000597618 RELL1Q8IUW5 271 aa8.78□□□□□ -1
TRIM28-210ENST00000597618 OR51F2Q8NH61 342 aa8.78□□□□□ -1
TRIM28-210ENST00000597618 CLHC1Q8NHS4 586 aa8.78□□□□□ -1
TRIM28-210ENST00000597618 ZNF563Q8TA94 476 aa8.78□□□□□ -1
TRIM28-210ENST00000597618 TMEM45BQ96B21 275 aa8.78□□□□□ -1
TRIM28-210ENST00000597618 CCDC126Q96EE4 140 aa8.78□□□□□ -1
TRIM28-210ENST00000597618 FCRL1Q96LA6 429 aa8.78□□□□□ -1
TRIM28-210ENST00000597618 ANKRD27Q96NW4 1050 aa8.78□□□□□ -1
TRIM28-210ENST00000597618 ZNF317Q96PQ6 595 aaPredicted RBP8.78□□□□□ -1
TRIM28-210ENST00000597618 SUCNR1Q9BXA5 334 aa8.78□□□□□ -1
TRIM28-210ENST00000597618 CTPS2Q9NRF8 586 aa8.78□□□□□ -1
TRIM28-210ENST00000597618 GPATCH2Q9NW75 528 aa8.78□□□□□ -1
TRIM28-210ENST00000597618 TMEM181Q9P2C4 612 aa8.78□□□□□ -1
TRIM28-210ENST00000597618 CRNNQ9UBG3 495 aaPredicted RBP8.78□□□□□ -1
TRIM28-210ENST00000597618 TRAPPC4Q9Y296 219 aa8.78□□□□□ -1
TRIM28-210ENST00000597618 PCDHGB1Q9Y5G3 927 aa8.78□□□□□ -1
TRIM28-210ENST00000597618 KCNE3Q9Y6H6 103 aa8.78□□□□□ -1
TRIM28-210ENST00000597618 NOTCH1P46531 2555 aa8.78□□□□□ -1
TRIM28-210ENST00000597618 POC1B-GALNT4F8VUJ3 575 aa8.77□□□□□ -1.01
TRIM28-210ENST00000597618 KRT33AO76009 404 aa8.77□□□□□ -1.01
TRIM28-210ENST00000597618 AK1P00568 194 aa8.77□□□□□ -1.01
TRIM28-210ENST00000597618 CECR9P0C854 216 aa8.77□□□□□ -1.01
TRIM28-210ENST00000597618 UROSP10746 265 aa8.77□□□□□ -1.01
TRIM28-210ENST00000597618 NEFHP12036 1026 aa8.77□□□□□ -1.01
TRIM28-210ENST00000597618 SLC35A1P78382 337 aa8.77□□□□□ -1.01
TRIM28-210ENST00000597618 SLC17A1Q14916 467 aa8.77□□□□□ -1.01
TRIM28-210ENST00000597618 ZNF141Q15928 474 aa8.77□□□□□ -1.01
TRIM28-210ENST00000597618 ANKRD16Q6P6B7 361 aa8.77□□□□□ -1.01
TRIM28-210ENST00000597618 TIFABQ6ZNK6 161 aa8.77□□□□□ -1.01
TRIM28-210ENST00000597618 FRMD7Q6ZUT3 714 aa8.77□□□□□ -1.01
TRIM28-210ENST00000597618 SPATA21Q7Z572 469 aa8.77□□□□□ -1.01
TRIM28-210ENST00000597618 ZCCHC24Q8N2G6 241 aaKnown RBP8.77□□□□□ -1.01
TRIM28-210ENST00000597618 LRRC17Q8N6Y2 441 aa8.77□□□□□ -1.01
TRIM28-210ENST00000597618 FAM169BQ8N8A8 192 aa8.77□□□□□ -1.01
TRIM28-210ENST00000597618 PSMA8Q8TAA3 256 aa8.77□□□□□ -1.01
TRIM28-210ENST00000597618 SFXN5Q8TD22 340 aa8.77□□□□□ -1.01
TRIM28-210ENST00000597618 OIT3Q8WWZ8 545 aa8.77□□□□□ -1.01
TRIM28-210ENST00000597618 MRPL24Q96A35 216 aaKnown RBP8.77□□□□□ -1.01
TRIM28-210ENST00000597618 MOAP1Q96BY2 351 aa8.77□□□□□ -1.01
TRIM28-210ENST00000597618 DNAJA3Q96EY1 480 aa8.77□□□□□ -1.01
TRIM28-210ENST00000597618 LRRC37BQ96QE4 947 aa8.77□□□□□ -1.01
TRIM28-210ENST00000597618 OR7D2Q96RA2 312 aa8.77□□□□□ -1.01
TRIM28-210ENST00000597618 SDF2Q99470 211 aa8.77□□□□□ -1.01
TRIM28-210ENST00000597618 DOK1Q99704 481 aa8.77□□□□□ -1.01
TRIM28-210ENST00000597618 NAA11Q9BSU3 229 aaPredicted RBP8.77□□□□□ -1.01
TRIM28-210ENST00000597618 OR11A1Q9GZK7 315 aa8.77□□□□□ -1.01
TRIM28-210ENST00000597618 CDC42EP4Q9H3Q1 356 aaKnown RBP8.77□□□□□ -1.01
TRIM28-210ENST00000597618 LPAR2Q9HBW0 351 aa8.77□□□□□ -1.01
TRIM28-210ENST00000597618 TMEM45AQ9NWC5 275 aa8.77□□□□□ -1.01
TRIM28-210ENST00000597618 BAIAP2L1Q9UHR4 511 aa8.77□□□□□ -1.01
TRIM28-210ENST00000597618 TMED5Q9Y3A6 229 aa8.77□□□□□ -1.01
TRIM28-210ENST00000597618 ARPC4-TTLL3A0A0A6YYG9 625 aa8.76□□□□□ -1.01
TRIM28-210ENST00000597618 TRAV20A0A0B4J274 112 aa8.76□□□□□ -1.01
TRIM28-210ENST00000597618 ZNF587BE7ETH6 402 aa8.76□□□□□ -1.01
TRIM28-210ENST00000597618 SCAMP2O15127 329 aaKnown RBP8.76□□□□□ -1.01
TRIM28-210ENST00000597618 STX11O75558 287 aa8.76□□□□□ -1.01
TRIM28-210ENST00000597618 PNPP00491 289 aa8.76□□□□□ -1.01
TRIM28-210ENST00000597618 IGLV1-44P01699 117 aa8.76□□□□□ -1.01
TRIM28-210ENST00000597618 ADRA2AP08913 450 aa8.76□□□□□ -1.01
TRIM28-210ENST00000597618 SAGP10523 405 aaPredicted RBP8.76□□□□□ -1.01
TRIM28-210ENST00000597618 CALCRP30988 508 aa8.76□□□□□ -1.01
TRIM28-210ENST00000597618 THBS4P35443 961 aa8.76□□□□□ -1.01
TRIM28-210ENST00000597618 RPL3P39023 403 aaKnown RBP8.76□□□□□ -1.01
TRIM28-210ENST00000597618 GPR6P46095 362 aaPredicted RBP8.76□□□□□ -1.01
TRIM28-210ENST00000597618 RPL38P63173 70 aaKnown RBP8.76□□□□□ -1.01
TRIM28-210ENST00000597618 POU3F1Q03052 451 aaPredicted RBP8.76□□□□□ -1.01
TRIM28-210ENST00000597618 FOXL1Q12952 345 aa8.76□□□□□ -1.01
TRIM28-210ENST00000597618 GPR68Q15743 365 aa8.76□□□□□ -1.01
TRIM28-210ENST00000597618 MIDNQ504T8 468 aa8.76□□□□□ -1.01
TRIM28-210ENST00000597618 FAHD2BQ6P2I3 314 aaPredicted RBP8.76□□□□□ -1.01
TRIM28-210ENST00000597618 PAQR6Q6TCH4 344 aa8.76□□□□□ -1.01
TRIM28-210ENST00000597618 TREML4Q6UXN2 200 aa8.76□□□□□ -1.01
TRIM28-210ENST00000597618 AAED1Q7RTV5 226 aa8.76□□□□□ -1.01
TRIM28-210ENST00000597618 FAM71CQ8NEG0 241 aa8.76□□□□□ -1.01
TRIM28-210ENST00000597618 OR5D16Q8NGK9 328 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms